RNA–Protein interactions for RNA: ENST00000489053.1

HDAC6-232, Transcript of histone deacetylase 6, humanhuman

TSL 4

Gene HDAC6, Length 539 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-232ENST00000489053 PTGS1P23219 599 aa10.5□□□□□ -0.73
HDAC6-232ENST00000489053 NAPAP54920 295 aa10.5□□□□□ -0.73
HDAC6-232ENST00000489053 PURAQ00577 322 aaKnown RBP10.5□□□□□ -0.73
HDAC6-232ENST00000489053 PGM5Q15124 567 aa10.5□□□□□ -0.73
HDAC6-232ENST00000489053 MFSD5Q6N075 450 aa10.5□□□□□ -0.73
HDAC6-232ENST00000489053 TMTC3Q6ZXV5 915 aa10.5□□□□□ -0.73
HDAC6-232ENST00000489053 NLRX1Q86UT6 975 aa10.5□□□□□ -0.73
HDAC6-232ENST00000489053 SGMS1Q86VZ5 419 aa10.5□□□□□ -0.73
HDAC6-232ENST00000489053 SRBD1Q8N5C6 995 aaKnown RBP10.5□□□□□ -0.73
HDAC6-232ENST00000489053 CCDC155Q8N6L0 562 aa10.5□□□□□ -0.73
HDAC6-232ENST00000489053 C7orf31Q8N865 590 aa10.5□□□□□ -0.73
HDAC6-232ENST00000489053 AFG1LQ8WV93 481 aa10.5□□□□□ -0.73
HDAC6-232ENST00000489053 SPATA33Q96N06 139 aa10.5□□□□□ -0.73
HDAC6-232ENST00000489053 PDCD2LQ9BRP1 358 aa10.5□□□□□ -0.73
HDAC6-232ENST00000489053 KATNAL1Q9BW62 490 aa10.5□□□□□ -0.73
HDAC6-232ENST00000489053 PCDH10Q9P2E7 1040 aa10.5□□□□□ -0.73
HDAC6-232ENST00000489053 LAMA3Q16787 3333 aa10.49□□□□□ -0.73
HDAC6-232ENST00000489053 hCG_1642624A0A1W2PR95 340 aa10.49□□□□□ -0.73
HDAC6-232ENST00000489053 A6NJR5 290 aa10.49□□□□□ -0.73
HDAC6-232ENST00000489053 CTAGE5O15320 804 aa10.49□□□□□ -0.73
HDAC6-232ENST00000489053 SORBS3O60504 671 aa10.49□□□□□ -0.73
HDAC6-232ENST00000489053 STAM2O75886 525 aa10.49□□□□□ -0.73
HDAC6-232ENST00000489053 ARIH2O95376 493 aa10.49□□□□□ -0.73
HDAC6-232ENST00000489053 MMP3P08254 477 aa10.49□□□□□ -0.73
HDAC6-232ENST00000489053 CDK7P50613 346 aa10.49□□□□□ -0.73
HDAC6-232ENST00000489053 NBPF20Q3BBV1 942 aa10.49□□□□□ -0.73
HDAC6-232ENST00000489053 TSGA10IPQ3SY00 556 aa10.49□□□□□ -0.73
HDAC6-232ENST00000489053 TMEM63BQ5T3F8 832 aa10.49□□□□□ -0.73
HDAC6-232ENST00000489053 XRRA1Q6P2D8 792 aa10.49□□□□□ -0.73
HDAC6-232ENST00000489053 PSRC1Q6PGN9 363 aaPredicted RBP10.49□□□□□ -0.73
HDAC6-232ENST00000489053 APOA5Q6Q788 366 aa10.49□□□□□ -0.73
HDAC6-232ENST00000489053 Q6ZUG5 572 aa10.49□□□□□ -0.73
HDAC6-232ENST00000489053 VSIG10LQ86VR7 867 aa10.49□□□□□ -0.73
HDAC6-232ENST00000489053 FAM126BQ8IXS8 530 aa10.49□□□□□ -0.73
HDAC6-232ENST00000489053 RASEFQ8IZ41 740 aa10.49□□□□□ -0.73
HDAC6-232ENST00000489053 RETREG2Q8NC44 543 aa10.49□□□□□ -0.73
HDAC6-232ENST00000489053 LRCH3Q96II8 777 aa10.49□□□□□ -0.73
HDAC6-232ENST00000489053 GLT8D2Q9H1C3 349 aa10.49□□□□□ -0.73
HDAC6-232ENST00000489053 TRPV6Q9H1D0 765 aa10.49□□□□□ -0.73
HDAC6-232ENST00000489053 ALDH8A1Q9H2A2 487 aaPredicted RBP10.49□□□□□ -0.73
HDAC6-232ENST00000489053 DDX41Q9UJV9 622 aaKnown RBP10.49□□□□□ -0.73
HDAC6-232ENST00000489053 TBX21Q9UL17 535 aa10.49□□□□□ -0.73
HDAC6-232ENST00000489053 SMCHD1A6NHR9 2005 aa10.48□□□□□ -0.73
HDAC6-232ENST00000489053 LAMA2P24043 3122 aaKnown RBP10.48□□□□□ -0.73
HDAC6-232ENST00000489053 hCG_1984214I3L0E3 225 aa10.48□□□□□ -0.73
HDAC6-232ENST00000489053 GGPS1O95749 300 aa10.48□□□□□ -0.73
HDAC6-232ENST00000489053 TGFB3P10600 412 aa10.48□□□□□ -0.73
HDAC6-232ENST00000489053 HSPA4P34932 840 aa10.48□□□□□ -0.73
HDAC6-232ENST00000489053 RCAN1P53805 252 aa10.48□□□□□ -0.73
HDAC6-232ENST00000489053 EXOSC10Q01780 885 aaKnown RBP10.48□□□□□ -0.73
HDAC6-232ENST00000489053 GHRHRQ02643 423 aa10.48□□□□□ -0.73
HDAC6-232ENST00000489053 PTPN11Q06124 597 aaPredicted RBP10.48□□□□□ -0.73
HDAC6-232ENST00000489053 BFSP2Q13515 415 aa10.48□□□□□ -0.73
HDAC6-232ENST00000489053 NEDD9Q14511 834 aa10.48□□□□□ -0.73
HDAC6-232ENST00000489053 SHHQ15465 462 aa10.48□□□□□ -0.73
HDAC6-232ENST00000489053 ADCK5Q3MIX3 580 aa10.48□□□□□ -0.73
HDAC6-232ENST00000489053 ZNF697Q5TEC3 545 aa10.48□□□□□ -0.73
HDAC6-232ENST00000489053 GPR153Q6NV75 609 aa10.48□□□□□ -0.73
HDAC6-232ENST00000489053 NFRKBQ6P4R8 1299 aa10.48□□□□□ -0.73
HDAC6-232ENST00000489053 CCDC62Q6P9F0 684 aa10.48□□□□□ -0.73
HDAC6-232ENST00000489053 USP17L6PQ6QN14 398 aa10.48□□□□□ -0.73
HDAC6-232ENST00000489053 RPUSD2Q8IZ73 545 aaKnown RBP10.48□□□□□ -0.73
HDAC6-232ENST00000489053 DEFB123Q8N688 67 aa10.48□□□□□ -0.73
HDAC6-232ENST00000489053 ZNF713Q8N859 430 aaPredicted RBP10.48□□□□□ -0.73
HDAC6-232ENST00000489053 PPTC7Q8NI37 304 aa10.48□□□□□ -0.73
HDAC6-232ENST00000489053 CCDC12Q8WUD4 166 aaPredicted RBP10.48□□□□□ -0.73
HDAC6-232ENST00000489053 GPKOWQ92917 476 aaPredicted RBP eCLIP10.48□□□□□ -0.73
HDAC6-232ENST00000489053 BRF1Q92994 677 aa10.48□□□□□ -0.73
HDAC6-232ENST00000489053 CDHR1Q96JP9 859 aa10.48□□□□□ -0.73
HDAC6-232ENST00000489053 TRMT13Q9NUP7 481 aaKnown RBP10.48□□□□□ -0.73
HDAC6-232ENST00000489053 SNX14Q9Y5W7 946 aa10.48□□□□□ -0.73
HDAC6-232ENST00000489053 CYP46A1Q9Y6A2 500 aa10.48□□□□□ -0.73
HDAC6-232ENST00000489053 ALPK3Q96L96 1907 aa10.47□□□□□ -0.73
HDAC6-232ENST00000489053 MCM3APO60318 1980 aa10.47□□□□□ -0.73
HDAC6-232ENST00000489053 PIK3CDO00329 1044 aa10.47□□□□□ -0.73
HDAC6-232ENST00000489053 SOX1O00570 391 aaPredicted RBP10.47□□□□□ -0.73
HDAC6-232ENST00000489053 CPLX1O14810 134 aa10.47□□□□□ -0.73
HDAC6-232ENST00000489053 OPLAHO14841 1288 aa10.47□□□□□ -0.73
HDAC6-232ENST00000489053 FIBPO43427 364 aa10.47□□□□□ -0.73
HDAC6-232ENST00000489053 B4GALT4O60513 344 aa10.47□□□□□ -0.73
HDAC6-232ENST00000489053 RPS6KB1P23443 525 aa10.47□□□□□ -0.73
HDAC6-232ENST00000489053 CYP2C18P33260 490 aa10.47□□□□□ -0.73
HDAC6-232ENST00000489053 ADCY7P51828 1080 aa10.47□□□□□ -0.73
HDAC6-232ENST00000489053 CCL23P55773 120 aa10.47□□□□□ -0.73
HDAC6-232ENST00000489053 ARHGAP1Q07960 439 aa10.47□□□□□ -0.73
HDAC6-232ENST00000489053 APOBRQ0VD83 1088 aa10.47□□□□□ -0.73
HDAC6-232ENST00000489053 SLC35G1Q2M3R5 365 aa10.47□□□□□ -0.73
HDAC6-232ENST00000489053 C9orf50Q5SZB4 431 aa10.47□□□□□ -0.73
HDAC6-232ENST00000489053 PPP1R18Q6NYC8 613 aa10.47□□□□□ -0.73
HDAC6-232ENST00000489053 CPLX2Q6PUV4 134 aaKnown RBP10.47□□□□□ -0.73
HDAC6-232ENST00000489053 SLC43A3Q8NBI5 491 aa10.47□□□□□ -0.73
HDAC6-232ENST00000489053 GIMAP8Q8ND71 665 aaPredicted RBP10.47□□□□□ -0.73
HDAC6-232ENST00000489053 EMID1Q96A84 441 aaPredicted RBP10.47□□□□□ -0.73
HDAC6-232ENST00000489053 ALG1Q9BT22 464 aa10.47□□□□□ -0.73
HDAC6-232ENST00000489053 RTEL1Q9NZ71 1219 aa10.47□□□□□ -0.73
HDAC6-232ENST00000489053 V9GY48 417 aaPredicted RBP10.47□□□□□ -0.73
HDAC6-232ENST00000489053 ZBBXA8MT70 800 aa10.46□□□□□ -0.73
HDAC6-232ENST00000489053 EPB41L2O43491 1005 aaKnown RBP10.46□□□□□ -0.73
HDAC6-232ENST00000489053 PPFIA4O75335 1185 aa10.46□□□□□ -0.73
HDAC6-232ENST00000489053 FOSP01100 380 aaPredicted RBP10.46□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms