RNA–Protein interactions for RNA: ENST00000481484.1

VPS13D-208, Transcript of vacuolar protein sorting 13 homolog D, human

TSL 5

Gene VPS13D, Length 360 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VPS13D-208	ENST00000481484	ELP1	O95163	1332 aa		4.89	□□□□□ -1.63
VPS13D-208	ENST00000481484	CCDC171	Q6TFL3	1326 aa		4.89	□□□□□ -1.63
VPS13D-208	ENST00000481484	WDR19	Q8NEZ3	1342 aa		4.89	□□□□□ -1.63
VPS13D-208	ENST00000481484	RAD50	Q92878	1312 aa		4.89	□□□□□ -1.63
VPS13D-208	ENST00000481484	SYNRG	Q9UMZ2	1314 aa		4.89	□□□□□ -1.63
VPS13D-208	ENST00000481484		A0A0U1RQG5	324 aa	Predicted RBP	4.88	□□□□□ -1.63
VPS13D-208	ENST00000481484		A0A1W2PQ45	241 aa	Predicted RBP	4.88	□□□□□ -1.63
VPS13D-208	ENST00000481484		A0A1W2PQY0	241 aa		4.88	□□□□□ -1.63
VPS13D-208	ENST00000481484	DCDC2C	A8MYV0	355 aa		4.88	□□□□□ -1.63
VPS13D-208	ENST00000481484		B4DLN1	442 aa		4.88	□□□□□ -1.63
VPS13D-208	ENST00000481484	KIAA0355	O15063	1070 aa		4.88	□□□□□ -1.63
VPS13D-208	ENST00000481484	TLR3	O15455	904 aa	Known RBP	4.88	□□□□□ -1.63
VPS13D-208	ENST00000481484	ZEB2	O60315	1214 aa		4.88	□□□□□ -1.63
VPS13D-208	ENST00000481484	ADAMTS4	O75173	837 aa		4.88	□□□□□ -1.63
VPS13D-208	ENST00000481484	ZNF865	P0CJ78	1059 aa	Predicted RBP	4.88	□□□□□ -1.63
VPS13D-208	ENST00000481484	TIMP2	P16035	220 aa		4.88	□□□□□ -1.63
VPS13D-208	ENST00000481484	SYN1	P17600	705 aa		4.88	□□□□□ -1.63
VPS13D-208	ENST00000481484	NOV	P48745	357 aa		4.88	□□□□□ -1.63
VPS13D-208	ENST00000481484	MRPL12	P52815	198 aa	Known RBP	4.88	□□□□□ -1.63
VPS13D-208	ENST00000481484	NKX3-2	P78367	333 aa		4.88	□□□□□ -1.63
VPS13D-208	ENST00000481484	SMAD3	P84022	425 aa	Known RBP	4.88	□□□□□ -1.63
VPS13D-208	ENST00000481484	ARID5B	Q14865	1188 aa		4.88	□□□□□ -1.63
VPS13D-208	ENST00000481484	TRIM60	Q495X7	471 aa		4.88	□□□□□ -1.63
VPS13D-208	ENST00000481484	TMEM259	Q4ZIN3	620 aa		4.88	□□□□□ -1.63
VPS13D-208	ENST00000481484	GPATCH4	Q5T3I0	446 aa	Known RBP	4.88	□□□□□ -1.63
VPS13D-208	ENST00000481484	GJC2	Q5T442	439 aa	Predicted RBP	4.88	□□□□□ -1.63
VPS13D-208	ENST00000481484	LCE2A	Q5TA79	106 aa	Predicted RBP	4.88	□□□□□ -1.63
VPS13D-208	ENST00000481484	TSHZ3	Q63HK5	1081 aa		4.88	□□□□□ -1.63
VPS13D-208	ENST00000481484	PSRC1	Q6PGN9	363 aa	Predicted RBP	4.88	□□□□□ -1.63
VPS13D-208	ENST00000481484	SLC39A5	Q6ZMH5	540 aa		4.88	□□□□□ -1.63
VPS13D-208	ENST00000481484	ARMCX2	Q7L311	632 aa		4.88	□□□□□ -1.63
VPS13D-208	ENST00000481484	ANKRD33	Q7Z3H0	272 aa		4.88	□□□□□ -1.63
VPS13D-208	ENST00000481484	LRRC47	Q8N1G4	583 aa	Known RBP	4.88	□□□□□ -1.63
VPS13D-208	ENST00000481484	STAG1	Q8WVM7	1258 aa		4.88	□□□□□ -1.63
VPS13D-208	ENST00000481484	GLT1D1	Q96MS3	346 aa		4.88	□□□□□ -1.63
VPS13D-208	ENST00000481484	BCL11A	Q9H165	835 aa		4.88	□□□□□ -1.63
VPS13D-208	ENST00000481484	VTA1	Q9NP79	307 aa		4.88	□□□□□ -1.63
VPS13D-208	ENST00000481484	STARD7	Q9NQZ5	370 aa		4.88	□□□□□ -1.63
VPS13D-208	ENST00000481484	RNF146	Q9NTX7	359 aa		4.88	□□□□□ -1.63
VPS13D-208	ENST00000481484	TCP11L1	Q9NUJ3	509 aa		4.88	□□□□□ -1.63
VPS13D-208	ENST00000481484	CLIP2	Q9UDT6	1046 aa		4.88	□□□□□ -1.63
VPS13D-208	ENST00000481484	ADD3	Q9UEY8	706 aa	Known RBP	4.88	□□□□□ -1.63
VPS13D-208	ENST00000481484	ZHX1	Q9UKY1	873 aa	Predicted RBP	4.88	□□□□□ -1.63
VPS13D-208	ENST00000481484	ISY1	Q9ULR0	285 aa	Known RBP	4.88	□□□□□ -1.63
VPS13D-208	ENST00000481484	STX8	Q9UNK0	236 aa		4.88	□□□□□ -1.63
VPS13D-208	ENST00000481484	KAT6A	Q92794	2004 aa		4.88	□□□□□ -1.63
VPS13D-208	ENST00000481484	MUC3A	Q02505	3323 aa		4.87	□□□□□ -1.63
VPS13D-208	ENST00000481484	TMEM232	C9JQI7	657 aa		4.87	□□□□□ -1.63
VPS13D-208	ENST00000481484	SOX1	O00570	391 aa	Predicted RBP	4.87	□□□□□ -1.63
VPS13D-208	ENST00000481484	NKRF	O15226	690 aa	Known RBP eCLIP	4.87	□□□□□ -1.63
VPS13D-208	ENST00000481484	PRDM1	O75626	825 aa		4.87	□□□□□ -1.63
VPS13D-208	ENST00000481484	ICAM1	P05362	532 aa		4.87	□□□□□ -1.63
VPS13D-208	ENST00000481484	PGK2	P07205	417 aa		4.87	□□□□□ -1.63
VPS13D-208	ENST00000481484	NR3C2	P08235	984 aa		4.87	□□□□□ -1.63
VPS13D-208	ENST00000481484	FGR	P09769	529 aa		4.87	□□□□□ -1.63
VPS13D-208	ENST00000481484	TOP1	P11387	765 aa	Known RBP	4.87	□□□□□ -1.63
VPS13D-208	ENST00000481484	ADCYAP1R1	P41586	468 aa		4.87	□□□□□ -1.63
VPS13D-208	ENST00000481484	ACLY	P53396	1101 aa		4.87	□□□□□ -1.63
VPS13D-208	ENST00000481484	PDE1A	P54750	535 aa		4.87	□□□□□ -1.63
VPS13D-208	ENST00000481484	WDR4	P57081	412 aa	Known RBP	4.87	□□□□□ -1.63
VPS13D-208	ENST00000481484	GJA9	P57773	515 aa		4.87	□□□□□ -1.63
VPS13D-208	ENST00000481484	TFAP4	Q01664	338 aa		4.87	□□□□□ -1.63
VPS13D-208	ENST00000481484	FPGS	Q05932	587 aa		4.87	□□□□□ -1.63
VPS13D-208	ENST00000481484	PPIG	Q13427	754 aa	Known RBP eCLIP	4.87	□□□□□ -1.63
VPS13D-208	ENST00000481484	ACVR2B	Q13705	512 aa		4.87	□□□□□ -1.63
VPS13D-208	ENST00000481484	CCDC96	Q2M329	555 aa		4.87	□□□□□ -1.63
VPS13D-208	ENST00000481484	SLFNL1	Q499Z3	407 aa		4.87	□□□□□ -1.63
VPS13D-208	ENST00000481484	MCMDC2	Q4G0Z9	681 aa		4.87	□□□□□ -1.63
VPS13D-208	ENST00000481484	BRDT	Q58F21	947 aa	Predicted RBP	4.87	□□□□□ -1.63
VPS13D-208	ENST00000481484	BTNL9	Q6UXG8	535 aa		4.87	□□□□□ -1.63
VPS13D-208	ENST00000481484	TREML4	Q6UXN2	200 aa		4.87	□□□□□ -1.63
VPS13D-208	ENST00000481484	TLK2	Q86UE8	772 aa		4.87	□□□□□ -1.63
VPS13D-208	ENST00000481484	IQCA1	Q86XH1	822 aa		4.87	□□□□□ -1.63
VPS13D-208	ENST00000481484	SMC5	Q8IY18	1101 aa		4.87	□□□□□ -1.63
VPS13D-208	ENST00000481484	DEFB123	Q8N688	67 aa		4.87	□□□□□ -1.63
VPS13D-208	ENST00000481484	FAM133A	Q8N9E0	248 aa		4.87	□□□□□ -1.63
VPS13D-208	ENST00000481484	EPS8L1	Q8TE68	723 aa		4.87	□□□□□ -1.63
VPS13D-208	ENST00000481484	ESR2	Q92731	530 aa		4.87	□□□□□ -1.63
VPS13D-208	ENST00000481484	TTC14	Q96N46	770 aa		4.87	□□□□□ -1.63
VPS13D-208	ENST00000481484	NUP88	Q99567	741 aa	Predicted RBP	4.87	□□□□□ -1.63
VPS13D-208	ENST00000481484	OCSTAMP	Q9BR26	566 aa		4.87	□□□□□ -1.63
VPS13D-208	ENST00000481484	RANBP17	Q9H2T7	1088 aa	Known RBP	4.87	□□□□□ -1.63
VPS13D-208	ENST00000481484	RWDD1	Q9H446	243 aa	Predicted RBP	4.87	□□□□□ -1.63
VPS13D-208	ENST00000481484	OSBPL3	Q9H4L5	887 aa		4.87	□□□□□ -1.63
VPS13D-208	ENST00000481484	CNNM2	Q9H8M5	875 aa		4.87	□□□□□ -1.63
VPS13D-208	ENST00000481484	A1CF	Q9NQ94	594 aa	Known RBP	4.87	□□□□□ -1.63
VPS13D-208	ENST00000481484	PRDM5	Q9NQX1	630 aa	Predicted RBP	4.87	□□□□□ -1.63
VPS13D-208	ENST00000481484	DIAPH3	Q9NSV4	1193 aa		4.87	□□□□□ -1.63
VPS13D-208	ENST00000481484	CCPG1	Q9ULG6	757 aa		4.87	□□□□□ -1.63
VPS13D-208	ENST00000481484		Q9Y3F1	56 aa		4.87	□□□□□ -1.63
VPS13D-208	ENST00000481484	GPSM3	Q9Y4H4	160 aa		4.87	□□□□□ -1.63
VPS13D-208	ENST00000481484	PIEZO1	Q92508	2521 aa		4.87	□□□□□ -1.63
VPS13D-208	ENST00000481484	MICAL3	Q7RTP6	2002 aa		4.87	□□□□□ -1.63
VPS13D-208	ENST00000481484	MYH7B	A7E2Y1	1941 aa		4.86	□□□□□ -1.63
VPS13D-208	ENST00000481484	TRIP12	Q14669	1992 aa	Predicted RBP	4.86	□□□□□ -1.63
VPS13D-208	ENST00000481484		A0A0D9SFI3	127 aa		4.86	□□□□□ -1.63
VPS13D-208	ENST00000481484	FOXP2	O15409	715 aa		4.86	□□□□□ -1.63
VPS13D-208	ENST00000481484	RANBP6	O60518	1105 aa	Known RBP	4.86	□□□□□ -1.63
VPS13D-208	ENST00000481484	PQBP1	O60828	265 aa	Known RBP	4.86	□□□□□ -1.63
VPS13D-208	ENST00000481484	PGK1	P00558	417 aa		4.86	□□□□□ -1.63

Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms