RNA–Protein interactions for RNA: ENST00000474643.5

VARS-223, Transcript of valyl-tRNA synthetase, humanhuman

TSL 5

Gene VARS, Length 885 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-223ENST00000474643 GRM4Q14833 912 aa17.49■□□□□ 0.39
VARS-223ENST00000474643 NFRKBQ6P4R8 1299 aa17.49■□□□□ 0.39
VARS-223ENST00000474643 DEFB128Q7Z7B8 93 aa17.49■□□□□ 0.39
VARS-223ENST00000474643 PHF6Q8IWS0 365 aaKnown RBP eCLIP17.49■□□□□ 0.392e-6■■■■□ 25.6
VARS-223ENST00000474643 MB21D2Q8IYB1 491 aaPredicted RBP17.49■□□□□ 0.39
VARS-223ENST00000474643 SCLYQ96I15 445 aa17.49■□□□□ 0.39
VARS-223ENST00000474643 PIGSQ96S52 555 aa17.49■□□□□ 0.39
VARS-223ENST00000474643 GAS2L1Q99501 681 aaPredicted RBP17.49■□□□□ 0.39
VARS-223ENST00000474643 ZNF576Q9H609 170 aa17.49■□□□□ 0.39
VARS-223ENST00000474643 COL20A1Q9P218 1284 aa17.49■□□□□ 0.39
VARS-223ENST00000474643 SEC63Q9UGP8 760 aaKnown RBP17.49■□□□□ 0.39
VARS-223ENST00000474643 SLC4A7Q9Y6M7 1214 aa17.49■□□□□ 0.39
VARS-223ENST00000474643 CCDC69A6NI79 296 aa17.48■□□□□ 0.39
VARS-223ENST00000474643 ARIH2O95376 493 aa17.48■□□□□ 0.39
VARS-223ENST00000474643 NR3C2P08235 984 aa17.48■□□□□ 0.39
VARS-223ENST00000474643 PFKMP08237 780 aa17.48■□□□□ 0.39
VARS-223ENST00000474643 CCND2P30279 289 aa17.48■□□□□ 0.39
VARS-223ENST00000474643 PTPN11Q06124 597 aaPredicted RBP17.48■□□□□ 0.39
VARS-223ENST00000474643 BFSP2Q13515 415 aa17.48■□□□□ 0.39
VARS-223ENST00000474643 DGKDQ16760 1214 aa17.48■□□□□ 0.39
VARS-223ENST00000474643 C16orf59Q7L2K0 433 aa17.48■□□□□ 0.39
VARS-223ENST00000474643 FCHSD1Q86WN1 690 aa17.48■□□□□ 0.39
VARS-223ENST00000474643 DHX37Q8IY37 1157 aaKnown RBP17.48■□□□□ 0.39
VARS-223ENST00000474643 PPP1R13LQ8WUF5 828 aa17.48■□□□□ 0.39
VARS-223ENST00000474643 HERVK_113Q902F9 699 aa17.48■□□□□ 0.39
VARS-223ENST00000474643 KATNAL1Q9BW62 490 aa17.48■□□□□ 0.39
VARS-223ENST00000474643 FTOQ9C0B1 505 aaKnown RBP eCLIP17.48■□□□□ 0.39
VARS-223ENST00000474643 MAP3K20Q9NYL2 800 aaKnown RBP17.48■□□□□ 0.39
VARS-223ENST00000474643 PNMA6FA0A0J9YX94 578 aa17.47■□□□□ 0.39
VARS-223ENST00000474643 MMP3P08254 477 aa17.47■□□□□ 0.39
VARS-223ENST00000474643 HSD17B4P51659 736 aa17.47■□□□□ 0.39
VARS-223ENST00000474643 LAMC2Q13753 1193 aa17.47■□□□□ 0.39
VARS-223ENST00000474643 PTGISQ16647 500 aa17.47■□□□□ 0.39
VARS-223ENST00000474643 KCNV1Q6PIU1 500 aa17.47■□□□□ 0.39
VARS-223ENST00000474643 C7orf31Q8N865 590 aa17.47■□□□□ 0.39
VARS-223ENST00000474643 CUL5Q93034 780 aa17.47■□□□□ 0.39
VARS-223ENST00000474643 NEK1Q96PY6 1258 aa17.47■□□□□ 0.39
VARS-223ENST00000474643 PBX4Q9BYU1 374 aa17.47■□□□□ 0.39
VARS-223ENST00000474643 WNT8AQ9H1J5 351 aa17.47■□□□□ 0.39
VARS-223ENST00000474643 CDH23Q9H251 3354 aa17.46■□□□□ 0.39
VARS-223ENST00000474643 GRXCR1A8MXD5 290 aa17.46■□□□□ 0.39
VARS-223ENST00000474643 ANTXR2P58335 489 aa17.46■□□□□ 0.39
VARS-223ENST00000474643 ARHGAP1Q07960 439 aa17.46■□□□□ 0.39
VARS-223ENST00000474643 CCDC62Q6P9F0 684 aa17.46■□□□□ 0.39
VARS-223ENST00000474643 SAMD3Q8N6K7 520 aa17.46■□□□□ 0.39
VARS-223ENST00000474643 RRP36Q96EU6 259 aaKnown RBP17.46■□□□□ 0.39
VARS-223ENST00000474643 TMEM87BQ96K49 555 aa17.46■□□□□ 0.39
VARS-223ENST00000474643 SLC28A3Q9HAS3 691 aa17.46■□□□□ 0.39
VARS-223ENST00000474643 SORBS3O60504 671 aa17.45■□□□□ 0.38
VARS-223ENST00000474643 EIF5BO60841 1220 aaKnown RBP17.45■□□□□ 0.38
VARS-223ENST00000474643 RFC2P35250 354 aa17.45■□□□□ 0.38
VARS-223ENST00000474643 PBX2P40425 430 aa17.45■□□□□ 0.38
VARS-223ENST00000474643 FGD1P98174 961 aa17.45■□□□□ 0.38
VARS-223ENST00000474643 GRIN2CQ14957 1233 aa17.45■□□□□ 0.38
VARS-223ENST00000474643 GNPTABQ3T906 1256 aa17.45■□□□□ 0.38
VARS-223ENST00000474643 ZNF654Q8IZM8 581 aa17.45■□□□□ 0.38
VARS-223ENST00000474643 TMTC2Q8N394 836 aa17.45■□□□□ 0.38
VARS-223ENST00000474643 PDCD2LQ9BRP1 358 aa17.45■□□□□ 0.38
VARS-223ENST00000474643 LRRC2Q9BYS8 371 aa17.45■□□□□ 0.38
VARS-223ENST00000474643 DDX41Q9UJV9 622 aaKnown RBP17.45■□□□□ 0.38
VARS-223ENST00000474643 A0A0C4DFX4 3053 aa17.45■□□□□ 0.38
VARS-223ENST00000474643 PITPNM1O00562 1244 aa17.44■□□□□ 0.38
VARS-223ENST00000474643 NOP56O00567 594 aaKnown RBP17.44■□□□□ 0.38
VARS-223ENST00000474643 PPP1R11O60927 126 aaPredicted RBP17.44■□□□□ 0.38
VARS-223ENST00000474643 DDAH1O94760 285 aa17.44■□□□□ 0.38
VARS-223ENST00000474643 HMGB1P09429 215 aaKnown RBP17.44■□□□□ 0.38
VARS-223ENST00000474643 ZNF286BP0CG31 522 aa17.44■□□□□ 0.38
VARS-223ENST00000474643 ATP2A2P16615 1042 aaKnown RBP17.44■□□□□ 0.38
VARS-223ENST00000474643 HSPA4P34932 840 aa17.44■□□□□ 0.38
VARS-223ENST00000474643 GNAQP50148 359 aa17.44■□□□□ 0.38
VARS-223ENST00000474643 TROAPQ12815 778 aa17.44■□□□□ 0.38
VARS-223ENST00000474643 PGM5Q15124 567 aa17.44■□□□□ 0.38
VARS-223ENST00000474643 RASIP1Q5U651 963 aa17.44■□□□□ 0.38
VARS-223ENST00000474643 RASEFQ8IZ41 740 aa17.44■□□□□ 0.38
VARS-223ENST00000474643 PPTC7Q8NI37 304 aa17.44■□□□□ 0.38
VARS-223ENST00000474643 SMARCC2Q8TAQ2 1214 aa17.44■□□□□ 0.38
VARS-223ENST00000474643 IGDCC4Q8TDY8 1250 aa17.44■□□□□ 0.38
VARS-223ENST00000474643 MTMR8Q96EF0 704 aa17.44■□□□□ 0.38
VARS-223ENST00000474643 SPATA33Q96N06 139 aa17.44■□□□□ 0.38
VARS-223ENST00000474643 JAKMIP1Q96N16 626 aaKnown RBP17.44■□□□□ 0.38
VARS-223ENST00000474643 LZTS2Q9BRK4 669 aa17.44■□□□□ 0.38
VARS-223ENST00000474643 ALG1Q9BT22 464 aa17.44■□□□□ 0.38
VARS-223ENST00000474643 MTA3Q9BTC8 594 aa17.44■□□□□ 0.38
VARS-223ENST00000474643 MYL10Q9BUA6 226 aa17.44■□□□□ 0.38
VARS-223ENST00000474643 RIOX1Q9H6W3 641 aa17.44■□□□□ 0.38
VARS-223ENST00000474643 MLXIPQ9HAP2 919 aa17.44■□□□□ 0.38
VARS-223ENST00000474643 SENP2Q9HC62 589 aa17.44■□□□□ 0.38
VARS-223ENST00000474643 CXXC1Q9P0U4 656 aaPredicted RBP17.44■□□□□ 0.38
VARS-223ENST00000474643 UNC80Q8N2C7 3258 aa17.44■□□□□ 0.38
VARS-223ENST00000474643 SH2B2O14492 632 aaPredicted RBP17.43■□□□□ 0.38
VARS-223ENST00000474643 GGPS1O95749 300 aa17.43■□□□□ 0.38
VARS-223ENST00000474643 CALM1P0DP23 149 aa17.43■□□□□ 0.38
VARS-223ENST00000474643 CALM2P0DP24 149 aa17.43■□□□□ 0.38
VARS-223ENST00000474643 CALM3P0DP25 149 aa17.43■□□□□ 0.38
VARS-223ENST00000474643 PSEN2P49810 448 aa17.43■□□□□ 0.38
VARS-223ENST00000474643 TSGA10IPQ3SY00 556 aa17.43■□□□□ 0.38
VARS-223ENST00000474643 PPP2R2DQ66LE6 453 aa17.43■□□□□ 0.38
VARS-223ENST00000474643 SYNE3Q6ZMZ3 975 aa17.43■□□□□ 0.38
VARS-223ENST00000474643 DHX32Q7L7V1 743 aaKnown RBP17.43■□□□□ 0.38
VARS-223ENST00000474643 CAGE1Q8TC20 777 aa17.43■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms