RNA–Protein interactions for RNA: ENST00000469003.5

CCDC28B-204, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 2

Gene CCDC28B, Length 1,235 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-204ENST00000469003 OTOP2Q7RTS6 562 aa19.24■□□□□ 0.67
CCDC28B-204ENST00000469003 HOMER1Q86YM7 354 aa19.24■□□□□ 0.67
CCDC28B-204ENST00000469003 PIGSQ96S52 555 aa19.24■□□□□ 0.67
CCDC28B-204ENST00000469003 DDX41Q9UJV9 622 aaKnown RBP19.24■□□□□ 0.67
CCDC28B-204ENST00000469003 RBM8AQ9Y5S9 174 aaKnown RBP19.24■□□□□ 0.67
CCDC28B-204ENST00000469003 PFKMP08237 780 aa19.23■□□□□ 0.67
CCDC28B-204ENST00000469003 ANTXR2P58335 489 aa19.23■□□□□ 0.67
CCDC28B-204ENST00000469003 RAB30Q15771 203 aa19.23■□□□□ 0.67
CCDC28B-204ENST00000469003 TMEM67Q5HYA8 995 aa19.23■□□□□ 0.67
CCDC28B-204ENST00000469003 CHST3Q7LGC8 479 aa19.23■□□□□ 0.67
CCDC28B-204ENST00000469003 MB21D2Q8IYB1 491 aaPredicted RBP19.23■□□□□ 0.67
CCDC28B-204ENST00000469003 PPP1R13LQ8WUF5 828 aa19.23■□□□□ 0.67
CCDC28B-204ENST00000469003 EMID1Q96A84 441 aaPredicted RBP19.23■□□□□ 0.67
CCDC28B-204ENST00000469003 VWCEQ96DN2 955 aa19.23■□□□□ 0.67
CCDC28B-204ENST00000469003 PDCD2LQ9BRP1 358 aa19.23■□□□□ 0.67
CCDC28B-204ENST00000469003 GBF1Q92538 1859 aa19.22■□□□□ 0.67
CCDC28B-204ENST00000469003 CYTH3O43739 400 aa19.22■□□□□ 0.67
CCDC28B-204ENST00000469003 CASTP20810 708 aaKnown RBP19.22■□□□□ 0.67
CCDC28B-204ENST00000469003 CATIPQ7Z7H3 387 aa19.22■□□□□ 0.67
CCDC28B-204ENST00000469003 IGDCC4Q8TDY8 1250 aa19.22■□□□□ 0.67
CCDC28B-204ENST00000469003 MSRAQ9UJ68 235 aa19.22■□□□□ 0.67
CCDC28B-204ENST00000469003 MRVI1Q9Y6F6 885 aa19.22■□□□□ 0.67
CCDC28B-204ENST00000469003 TANC1Q9C0D5 1861 aa19.22■□□□□ 0.67
CCDC28B-204ENST00000469003 SCN5AQ14524 2016 aa19.22■□□□□ 0.67
CCDC28B-204ENST00000469003 BAZ2BQ9UIF8 2168 aaKnown RBP19.22■□□□□ 0.67
CCDC28B-204ENST00000469003 PNMA6FA0A0J9YX94 578 aa19.21■□□□□ 0.67
CCDC28B-204ENST00000469003 PITPNM1O00562 1244 aa19.21■□□□□ 0.67
CCDC28B-204ENST00000469003 HOXA13P31271 388 aaPredicted RBP19.21■□□□□ 0.67
CCDC28B-204ENST00000469003 RFC2P35250 354 aa19.21■□□□□ 0.67
CCDC28B-204ENST00000469003 BFSP2Q13515 415 aa19.21■□□□□ 0.67
CCDC28B-204ENST00000469003 LAMC2Q13753 1193 aa19.21■□□□□ 0.67
CCDC28B-204ENST00000469003 DGKDQ16760 1214 aa19.21■□□□□ 0.67
CCDC28B-204ENST00000469003 SESTD1Q86VW0 696 aa19.21■□□□□ 0.67
CCDC28B-204ENST00000469003 KAT2BQ92831 832 aa19.21■□□□□ 0.67
CCDC28B-204ENST00000469003 MTA3Q9BTC8 594 aa19.21■□□□□ 0.67
CCDC28B-204ENST00000469003 MYH7BA7E2Y1 1941 aa19.21■□□□□ 0.67
CCDC28B-204ENST00000469003 GCOM1H8Y6P7 765 aaPredicted RBP19.2■□□□□ 0.66
CCDC28B-204ENST00000469003 POLR2MP0CAP2 368 aa19.2■□□□□ 0.66
CCDC28B-204ENST00000469003 MYCLP12524 364 aaPredicted RBP19.2■□□□□ 0.66
CCDC28B-204ENST00000469003 CHMP4BP1P59074 171 aa19.2■□□□□ 0.66
CCDC28B-204ENST00000469003 PGM5Q15124 567 aa19.2■□□□□ 0.66
CCDC28B-204ENST00000469003 KCNV1Q6PIU1 500 aa19.2■□□□□ 0.66
CCDC28B-204ENST00000469003 VSIG10LQ86VR7 867 aa19.2■□□□□ 0.66
CCDC28B-204ENST00000469003 RETREG2Q8NC44 543 aa19.2■□□□□ 0.66
CCDC28B-204ENST00000469003 MAP3K14Q99558 947 aa19.2■□□□□ 0.66
CCDC28B-204ENST00000469003 NOD1Q9Y239 953 aa19.2■□□□□ 0.66
CCDC28B-204ENST00000469003 SLC4A7Q9Y6M7 1214 aa19.2■□□□□ 0.66
CCDC28B-204ENST00000469003 ZBBXA8MT70 800 aa19.19■□□□□ 0.66
CCDC28B-204ENST00000469003 RGS20O76081 388 aa19.19■□□□□ 0.66
CCDC28B-204ENST00000469003 DDAH1O94760 285 aa19.19■□□□□ 0.66
CCDC28B-204ENST00000469003 IQCF3P0C7M6 154 aa19.19■□□□□ 0.66
CCDC28B-204ENST00000469003 PTGISQ16647 500 aa19.19■□□□□ 0.66
CCDC28B-204ENST00000469003 CASC1Q6TDU7 716 aa19.19■□□□□ 0.66
CCDC28B-204ENST00000469003 DEFB128Q7Z7B8 93 aa19.19■□□□□ 0.66
CCDC28B-204ENST00000469003 DHX37Q8IY37 1157 aaKnown RBP19.19■□□□□ 0.66
CCDC28B-204ENST00000469003 ZNF654Q8IZM8 581 aa19.19■□□□□ 0.66
CCDC28B-204ENST00000469003 IL31RAQ8NI17 732 aa19.19■□□□□ 0.66
CCDC28B-204ENST00000469003 PPTC7Q8NI37 304 aa19.19■□□□□ 0.66
CCDC28B-204ENST00000469003 LSG1Q9H089 658 aaKnown RBP19.19■□□□□ 0.66
CCDC28B-204ENST00000469003 NKX2-4Q9H2Z4 354 aa19.19■□□□□ 0.66
CCDC28B-204ENST00000469003 LY9Q9HBG7 655 aa19.19■□□□□ 0.66
CCDC28B-204ENST00000469003 MUC3AQ02505 3323 aa19.18■□□□□ 0.66
CCDC28B-204ENST00000469003 ACTN1P12814 892 aa19.18■□□□□ 0.66
CCDC28B-204ENST00000469003 COL9A1P20849 921 aa19.18■□□□□ 0.66
CCDC28B-204ENST00000469003 CCND2P30279 289 aa19.18■□□□□ 0.66
CCDC28B-204ENST00000469003 GDF6Q6KF10 455 aaPredicted RBP19.18■□□□□ 0.66
CCDC28B-204ENST00000469003 CCDC155Q8N6L0 562 aa19.18■□□□□ 0.66
CCDC28B-204ENST00000469003 CAGE1Q8TC20 777 aa19.18■□□□□ 0.66
CCDC28B-204ENST00000469003 ESYT1Q9BSJ8 1104 aa19.18■□□□□ 0.66
CCDC28B-204ENST00000469003 KATNAL1Q9BW62 490 aa19.18■□□□□ 0.66
CCDC28B-204ENST00000469003 SPZ1Q9BXG8 430 aa19.18■□□□□ 0.66
CCDC28B-204ENST00000469003 YBX2Q9Y2T7 364 aaKnown RBP19.18■□□□□ 0.66
CCDC28B-204ENST00000469003 PRC1O43663 620 aa19.17■□□□□ 0.66
CCDC28B-204ENST00000469003 F2P00734 622 aa19.17■□□□□ 0.66
CCDC28B-204ENST00000469003 TGFB3P10600 412 aa19.17■□□□□ 0.66
CCDC28B-204ENST00000469003 HOXD8P13378 290 aaPredicted RBP19.17■□□□□ 0.66
CCDC28B-204ENST00000469003 KIF5BP33176 963 aa19.17■□□□□ 0.66
CCDC28B-204ENST00000469003 PSEN2P49810 448 aa19.17■□□□□ 0.66
CCDC28B-204ENST00000469003 TJAP1Q5JTD0 557 aa19.17■□□□□ 0.66
CCDC28B-204ENST00000469003 CELF3Q5SZQ8 465 aaKnown RBP19.17■□□□□ 0.66
CCDC28B-204ENST00000469003 MYSM1Q5VVJ2 828 aa19.17■□□□□ 0.66
CCDC28B-204ENST00000469003 FCHSD1Q86WN1 690 aa19.17■□□□□ 0.66
CCDC28B-204ENST00000469003 CTCFLQ8NI51 663 aaPredicted RBP19.17■□□□□ 0.66
CCDC28B-204ENST00000469003 CTAGE1Q96RT6 745 aa19.17■□□□□ 0.66
CCDC28B-204ENST00000469003 GAS2L1Q99501 681 aaPredicted RBP19.17■□□□□ 0.66
CCDC28B-204ENST00000469003 PRDM12Q9H4Q4 367 aa19.17■□□□□ 0.66
CCDC28B-204ENST00000469003 SLC28A3Q9HAS3 691 aa19.17■□□□□ 0.66
CCDC28B-204ENST00000469003 GTF2IRD1Q9UHL9 959 aa19.17■□□□□ 0.66
CCDC28B-204ENST00000469003 PCDHA11Q9Y5I1 949 aa19.17■□□□□ 0.66
CCDC28B-204ENST00000469003 TRIP12Q14669 1992 aaPredicted RBP19.17■□□□□ 0.66
CCDC28B-204ENST00000469003 HAS3O00219 553 aa19.16■□□□□ 0.66
CCDC28B-204ENST00000469003 TNFRSF10AO00220 468 aa19.16■□□□□ 0.66
CCDC28B-204ENST00000469003 ATP2A2P16615 1042 aaKnown RBP19.16■□□□□ 0.66
CCDC28B-204ENST00000469003 SMARCA1P28370 1054 aa19.16■□□□□ 0.66
CCDC28B-204ENST00000469003 MCM5P33992 734 aa19.16■□□□□ 0.66
CCDC28B-204ENST00000469003 RABGGTBP53611 331 aa19.16■□□□□ 0.66
CCDC28B-204ENST00000469003 MFSD10Q14728 455 aa19.16■□□□□ 0.66
CCDC28B-204ENST00000469003 TMTC2Q8N394 836 aa19.16■□□□□ 0.66
CCDC28B-204ENST00000469003 C7orf31Q8N865 590 aa19.16■□□□□ 0.66
CCDC28B-204ENST00000469003 AFAP1L1Q8TED9 768 aa19.16■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms