RNA–Protein interactions for RNA: ENST00000462673.1

USP4-207, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 709 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-207ENST00000462673 CCDC85CA6NKD9 419 aa8.85□□□□□ -0.99
USP4-207ENST00000462673 NKRFO15226 690 aaKnown RBP eCLIP8.85□□□□□ -0.99
USP4-207ENST00000462673 SEPT4O43236 478 aa8.85□□□□□ -0.99
USP4-207ENST00000462673 ZEB2O60315 1214 aa8.85□□□□□ -0.99
USP4-207ENST00000462673 TFRCP02786 760 aaKnown RBP8.85□□□□□ -0.99
USP4-207ENST00000462673 GJB1P08034 283 aa8.85□□□□□ -0.99
USP4-207ENST00000462673 TGFB3P10600 412 aa8.85□□□□□ -0.99
USP4-207ENST00000462673 RARBP10826 455 aa8.85□□□□□ -0.99
USP4-207ENST00000462673 PRKAR2AP13861 404 aaKnown RBP8.85□□□□□ -0.99
USP4-207ENST00000462673 AKR1A1P14550 325 aa8.85□□□□□ -0.99
USP4-207ENST00000462673 ELNP15502 786 aa8.85□□□□□ -0.99
USP4-207ENST00000462673 CCND2P30279 289 aa8.85□□□□□ -0.99
USP4-207ENST00000462673 ALDH5A1P51649 535 aaPredicted RBP8.85□□□□□ -0.99
USP4-207ENST00000462673 CACNB2Q08289 660 aaPredicted RBP8.85□□□□□ -0.99
USP4-207ENST00000462673 FUT2Q10981 343 aa8.85□□□□□ -0.99
USP4-207ENST00000462673 ACVR2BQ13705 512 aa8.85□□□□□ -0.99
USP4-207ENST00000462673 COL9A3Q14050 684 aaPredicted RBP8.85□□□□□ -0.99
USP4-207ENST00000462673 NLRX1Q86UT6 975 aa8.85□□□□□ -0.99
USP4-207ENST00000462673 FCHSD1Q86WN1 690 aa8.85□□□□□ -0.99
USP4-207ENST00000462673 GIMAP8Q8ND71 665 aaPredicted RBP8.85□□□□□ -0.99
USP4-207ENST00000462673 SYTL5Q8TDW5 730 aaPredicted RBP8.85□□□□□ -0.99
USP4-207ENST00000462673 SH3TC2Q8TF17 1288 aa8.85□□□□□ -0.99
USP4-207ENST00000462673 TRIB2Q92519 343 aa8.85□□□□□ -0.99
USP4-207ENST00000462673 ABHD8Q96I13 439 aa8.85□□□□□ -0.99
USP4-207ENST00000462673 ZNF333Q96JL9 665 aa8.85□□□□□ -0.99
USP4-207ENST00000462673 NAP1L4Q99733 375 aaKnown RBP8.85□□□□□ -0.99
USP4-207ENST00000462673 CDKN2AIPQ9NXV6 580 aaPredicted RBP8.85□□□□□ -0.99
USP4-207ENST00000462673 ZDHHC9Q9Y397 364 aa8.85□□□□□ -0.99
USP4-207ENST00000462673 Q9Y3F1 56 aa8.85□□□□□ -0.99
USP4-207ENST00000462673 RLFQ13129 1914 aa8.85□□□□□ -0.99
USP4-207ENST00000462673 hCG_1642624A0A1W2PR95 340 aa8.84□□□□□ -0.99
USP4-207ENST00000462673 STXBP3O00186 592 aa8.84□□□□□ -0.99
USP4-207ENST00000462673 MGAMO43451 1857 aa8.84□□□□□ -0.99
USP4-207ENST00000462673 PPP1R11O60927 126 aaPredicted RBP8.84□□□□□ -0.99
USP4-207ENST00000462673 SGPL1O95470 568 aa8.84□□□□□ -0.99
USP4-207ENST00000462673 NR3C2P08235 984 aa8.84□□□□□ -0.99
USP4-207ENST00000462673 CCL5P13501 91 aa8.84□□□□□ -0.99
USP4-207ENST00000462673 PDCP20941 246 aa8.84□□□□□ -0.99
USP4-207ENST00000462673 CYP2C19P33261 490 aa8.84□□□□□ -0.99
USP4-207ENST00000462673 ZNF76P36508 570 aa8.84□□□□□ -0.99
USP4-207ENST00000462673 CNTN2Q02246 1040 aa8.84□□□□□ -0.99
USP4-207ENST00000462673 GNL2Q13823 731 aaKnown RBP8.84□□□□□ -0.99
USP4-207ENST00000462673 TTLL4Q14679 1199 aa8.84□□□□□ -0.99
USP4-207ENST00000462673 WWC2Q6AWC2 1192 aa8.84□□□□□ -0.99
USP4-207ENST00000462673 ARMCX2Q7L311 632 aa8.84□□□□□ -0.99
USP4-207ENST00000462673 RNF180Q86T96 592 aa8.84□□□□□ -0.99
USP4-207ENST00000462673 REXO1Q8N1G1 1221 aaKnown RBP8.84□□□□□ -0.99
USP4-207ENST00000462673 NECAB1Q8N987 351 aa8.84□□□□□ -0.99
USP4-207ENST00000462673 ANKLE1Q8NAG6 615 aa8.84□□□□□ -0.99
USP4-207ENST00000462673 MORC4Q8TE76 937 aa8.84□□□□□ -0.99
USP4-207ENST00000462673 SCFD2Q8WU76 684 aa8.84□□□□□ -0.99
USP4-207ENST00000462673 TMX3Q96JJ7 454 aa8.84□□□□□ -0.99
USP4-207ENST00000462673 TAAR1Q96RJ0 339 aa8.84□□□□□ -0.99
USP4-207ENST00000462673 ALG1Q9BT22 464 aa8.84□□□□□ -0.99
USP4-207ENST00000462673 GTPBP4Q9BZE4 634 aaKnown RBP8.84□□□□□ -0.99
USP4-207ENST00000462673 AP5M1Q9H0R1 490 aa8.84□□□□□ -0.99
USP4-207ENST00000462673 PXMP2Q9NR77 195 aa8.84□□□□□ -0.99
USP4-207ENST00000462673 PCDHA6Q9UN73 950 aa8.84□□□□□ -0.99
USP4-207ENST00000462673 PCDHA4Q9UN74 947 aa8.84□□□□□ -0.99
USP4-207ENST00000462673 SMC3Q9UQE7 1217 aa8.84□□□□□ -0.99
USP4-207ENST00000462673 PCDHA8Q9Y5H6 950 aa8.84□□□□□ -0.99
USP4-207ENST00000462673 A0A0G2JMZ2 1700 aa8.83□□□□□ -1
USP4-207ENST00000462673 COL11A1P12107 1806 aaPredicted RBP8.83□□□□□ -1
USP4-207ENST00000462673 PARP14Q460N5 1801 aa8.83□□□□□ -1
USP4-207ENST00000462673 SOWAHBA6NEL2 793 aa8.83□□□□□ -1
USP4-207ENST00000462673 GOLGA6L6A8MZA4 724 aa8.83□□□□□ -1
USP4-207ENST00000462673 MEIS2O14770 477 aa8.83□□□□□ -1
USP4-207ENST00000462673 MYCLP12524 364 aaPredicted RBP8.83□□□□□ -1
USP4-207ENST00000462673 HOXA13P31271 388 aaPredicted RBP8.83□□□□□ -1
USP4-207ENST00000462673 USP11P51784 963 aa8.83□□□□□ -1
USP4-207ENST00000462673 TNFAIP2Q03169 654 aa8.83□□□□□ -1
USP4-207ENST00000462673 PKN1Q16512 942 aa8.83□□□□□ -1
USP4-207ENST00000462673 CCL14Q16627 93 aa8.83□□□□□ -1
USP4-207ENST00000462673 MAP3K21Q5TCX8 1036 aa8.83□□□□□ -1
USP4-207ENST00000462673 PCNX4Q63HM2 1172 aa8.83□□□□□ -1
USP4-207ENST00000462673 VSIG10LQ86VR7 867 aa8.83□□□□□ -1
USP4-207ENST00000462673 CCDC83Q8IWF9 413 aa8.83□□□□□ -1
USP4-207ENST00000462673 PCSK9Q8NBP7 692 aaKnown RBP8.83□□□□□ -1
USP4-207ENST00000462673 RNF214Q8ND24 703 aa8.83□□□□□ -1
USP4-207ENST00000462673 GPKOWQ92917 476 aaPredicted RBP eCLIP8.83□□□□□ -1
USP4-207ENST00000462673 C8orf76Q96K31 380 aa8.83□□□□□ -1
USP4-207ENST00000462673 XRN2Q9H0D6 950 aaKnown RBP eCLIP8.83□□□□□ -1
USP4-207ENST00000462673 SPTLC3Q9NUV7 552 aa8.83□□□□□ -1
USP4-207ENST00000462673 DDX20Q9UHI6 824 aaKnown RBP8.83□□□□□ -1
USP4-207ENST00000462673 ZHX1Q9UKY1 873 aaPredicted RBP8.83□□□□□ -1
USP4-207ENST00000462673 CCDC194A0A1B0GVG4 234 aa8.82□□□□□ -1
USP4-207ENST00000462673 H3BQV1 296 aa8.82□□□□□ -1
USP4-207ENST00000462673 KPNA6O60684 536 aa8.82□□□□□ -1
USP4-207ENST00000462673 DUSP11O75319 330 aaKnown RBP8.82□□□□□ -1
USP4-207ENST00000462673 SNAI1O95863 264 aaPredicted RBP8.82□□□□□ -1
USP4-207ENST00000462673 EIF2AK2P19525 551 aaKnown RBP8.82□□□□□ -1
USP4-207ENST00000462673 EDNRBP24530 442 aa8.82□□□□□ -1
USP4-207ENST00000462673 KRT2P35908 639 aa8.82□□□□□ -1
USP4-207ENST00000462673 GJA8P48165 433 aa8.82□□□□□ -1
USP4-207ENST00000462673 NEDD9Q14511 834 aa8.82□□□□□ -1
USP4-207ENST00000462673 PGM5Q15124 567 aa8.82□□□□□ -1
USP4-207ENST00000462673 IFFO2Q5TF58 517 aa8.82□□□□□ -1
USP4-207ENST00000462673 USP17L6PQ6QN14 398 aa8.82□□□□□ -1
USP4-207ENST00000462673 SLC30A10Q6XR72 485 aa8.82□□□□□ -1
USP4-207ENST00000462673 KRT25Q7Z3Z0 450 aa8.82□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms