RNA–Protein interactions for RNA: ENST00000461553.1

USP4-206, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 4

Gene USP4, Length 544 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-206ENST00000461553 TRMT13Q9NUP7 481 aaKnown RBP16.15■□□□□ 0.18
USP4-206ENST00000461553 SEC63Q9UGP8 760 aaKnown RBP16.15■□□□□ 0.18
USP4-206ENST00000461553 UMODL1Q5DID0 1318 aa16.15■□□□□ 0.18
USP4-206ENST00000461553 EYSQ5T1H1 3165 aa16.14■□□□□ 0.17
USP4-206ENST00000461553 HSFX4A0A1B0GTS1 333 aaPredicted RBP16.14■□□□□ 0.17
USP4-206ENST00000461553 HSFX3A0A1B0GWH4 333 aaPredicted RBP16.14■□□□□ 0.17
USP4-206ENST00000461553 ACRP10323 421 aa16.14■□□□□ 0.17
USP4-206ENST00000461553 MYCLP12524 364 aaPredicted RBP16.14■□□□□ 0.17
USP4-206ENST00000461553 CCL23P55773 120 aa16.14■□□□□ 0.17
USP4-206ENST00000461553 ARHGAP1Q07960 439 aa16.14■□□□□ 0.17
USP4-206ENST00000461553 PGM5Q15124 567 aa16.14■□□□□ 0.17
USP4-206ENST00000461553 NBPF20Q3BBV1 942 aa16.14■□□□□ 0.17
USP4-206ENST00000461553 TMEM240Q5SV17 173 aa16.14■□□□□ 0.17
USP4-206ENST00000461553 SKAP1Q86WV1 359 aa16.14■□□□□ 0.17
USP4-206ENST00000461553 TMTC2Q8N394 836 aa16.14■□□□□ 0.17
USP4-206ENST00000461553 AFG1LQ8WV93 481 aa16.14■□□□□ 0.17
USP4-206ENST00000461553 PIBF1Q8WXW3 757 aa16.14■□□□□ 0.17
USP4-206ENST00000461553 RRP36Q96EU6 259 aaKnown RBP16.14■□□□□ 0.17
USP4-206ENST00000461553 WNT8AQ9H1J5 351 aa16.14■□□□□ 0.17
USP4-206ENST00000461553 CDC45O75419 566 aa16.13■□□□□ 0.17
USP4-206ENST00000461553 CALM1P0DP23 149 aa16.13■□□□□ 0.17
USP4-206ENST00000461553 CALM2P0DP24 149 aa16.13■□□□□ 0.17
USP4-206ENST00000461553 CALM3P0DP25 149 aa16.13■□□□□ 0.17
USP4-206ENST00000461553 DNAJB2P25686 324 aa16.13■□□□□ 0.17
USP4-206ENST00000461553 CCND2P30279 289 aa16.13■□□□□ 0.17
USP4-206ENST00000461553 GNAQP50148 359 aa16.13■□□□□ 0.17
USP4-206ENST00000461553 CHMP4BP1P59074 171 aa16.13■□□□□ 0.17
USP4-206ENST00000461553 PTPN11Q06124 597 aaPredicted RBP16.13■□□□□ 0.17
USP4-206ENST00000461553 ZNF365Q70YC5 407 aa16.13■□□□□ 0.17
USP4-206ENST00000461553 FCHSD1Q86WN1 690 aa16.13■□□□□ 0.17
USP4-206ENST00000461553 EMID1Q96A84 441 aaPredicted RBP16.13■□□□□ 0.17
USP4-206ENST00000461553 LZTS2Q9BRK4 669 aa16.13■□□□□ 0.17
USP4-206ENST00000461553 NOD1Q9Y239 953 aa16.13■□□□□ 0.17
USP4-206ENST00000461553 UNC80Q8N2C7 3258 aa16.13■□□□□ 0.17
USP4-206ENST00000461553 KAT6AQ92794 2004 aa16.12■□□□□ 0.17
USP4-206ENST00000461553 TET1Q8NFU7 2136 aa16.12■□□□□ 0.17
USP4-206ENST00000461553 CYP2C9P11712 490 aa16.12■□□□□ 0.17
USP4-206ENST00000461553 CASTP20810 708 aaKnown RBP16.12■□□□□ 0.17
USP4-206ENST00000461553 NECTIN1Q15223 517 aa16.12■□□□□ 0.17
USP4-206ENST00000461553 DGKDQ16760 1214 aa16.12■□□□□ 0.17
USP4-206ENST00000461553 KCNV1Q6PIU1 500 aa16.12■□□□□ 0.17
USP4-206ENST00000461553 SLC17A8Q8NDX2 589 aa16.12■□□□□ 0.17
USP4-206ENST00000461553 KATNAL1Q9BW62 490 aa16.12■□□□□ 0.17
USP4-206ENST00000461553 DDX41Q9UJV9 622 aaKnown RBP16.12■□□□□ 0.17
USP4-206ENST00000461553 SLC12A7Q9Y666 1083 aa16.12■□□□□ 0.17
USP4-206ENST00000461553 PFKMP08237 780 aa16.11■□□□□ 0.17
USP4-206ENST00000461553 RXRAP19793 462 aa16.11■□□□□ 0.17
USP4-206ENST00000461553 SMARCA1P28370 1054 aa16.11■□□□□ 0.17
USP4-206ENST00000461553 LIFRP42702 1097 aa16.11■□□□□ 0.17
USP4-206ENST00000461553 LAMC2Q13753 1193 aa16.11■□□□□ 0.17
USP4-206ENST00000461553 GNPTABQ3T906 1256 aa16.11■□□□□ 0.17
USP4-206ENST00000461553 RASIP1Q5U651 963 aa16.11■□□□□ 0.17
USP4-206ENST00000461553 C16orf59Q7L2K0 433 aa16.11■□□□□ 0.17
USP4-206ENST00000461553 DHX37Q8IY37 1157 aaKnown RBP16.11■□□□□ 0.17
USP4-206ENST00000461553 RPUSD2Q8IZ73 545 aaKnown RBP16.11■□□□□ 0.17
USP4-206ENST00000461553 CCDC155Q8N6L0 562 aa16.11■□□□□ 0.17
USP4-206ENST00000461553 IL31RAQ8NI17 732 aa16.11■□□□□ 0.17
USP4-206ENST00000461553 PPTC7Q8NI37 304 aa16.11■□□□□ 0.17
USP4-206ENST00000461553 SMARCC2Q8TAQ2 1214 aa16.11■□□□□ 0.17
USP4-206ENST00000461553 HERVK_113Q902F9 699 aa16.11■□□□□ 0.17
USP4-206ENST00000461553 CUL5Q93034 780 aa16.11■□□□□ 0.17
USP4-206ENST00000461553 TIFAQ96CG3 184 aa16.11■□□□□ 0.17
USP4-206ENST00000461553 SCLYQ96I15 445 aa16.11■□□□□ 0.17
USP4-206ENST00000461553 TTYH1Q9H313 450 aaPredicted RBP16.11■□□□□ 0.17
USP4-206ENST00000461553 SEMA6BQ9H3T3 888 aa16.11■□□□□ 0.17
USP4-206ENST00000461553 FRMPD4Q14CM0 1322 aa16.11■□□□□ 0.17
USP4-206ENST00000461553 PITPNM1O00562 1244 aa16.1■□□□□ 0.17
USP4-206ENST00000461553 PLEKHA8P1O95397 391 aa16.1■□□□□ 0.17
USP4-206ENST00000461553 FGBP02675 491 aa16.1■□□□□ 0.17
USP4-206ENST00000461553 BFSP2Q13515 415 aa16.1■□□□□ 0.17
USP4-206ENST00000461553 MICU3Q86XE3 530 aa16.1■□□□□ 0.17
USP4-206ENST00000461553 PPP1R13LQ8WUF5 828 aa16.1■□□□□ 0.17
USP4-206ENST00000461553 CCDC136Q96JN2 1154 aa16.1■□□□□ 0.17
USP4-206ENST00000461553 CDX2Q99626 313 aaPredicted RBP16.1■□□□□ 0.17
USP4-206ENST00000461553 LRRC2Q9BYS8 371 aa16.1■□□□□ 0.17
USP4-206ENST00000461553 CUL9Q8IWT3 2517 aa16.09■□□□□ 0.17
USP4-206ENST00000461553 STAM2O75886 525 aa16.09■□□□□ 0.17
USP4-206ENST00000461553 RGS20O76081 388 aa16.09■□□□□ 0.17
USP4-206ENST00000461553 GGPS1O95749 300 aa16.09■□□□□ 0.17
USP4-206ENST00000461553 F2P00734 622 aa16.09■□□□□ 0.17
USP4-206ENST00000461553 ZNF286BP0CG31 522 aa16.09■□□□□ 0.17
USP4-206ENST00000461553 UBA1P22314 1058 aaKnown RBP16.09■□□□□ 0.17
USP4-206ENST00000461553 RFC2P35250 354 aa16.09■□□□□ 0.17
USP4-206ENST00000461553 RAB30Q15771 203 aa16.09■□□□□ 0.17
USP4-206ENST00000461553 SYNE3Q6ZMZ3 975 aa16.09■□□□□ 0.17
USP4-206ENST00000461553 OTOP2Q7RTS6 562 aa16.09■□□□□ 0.17
USP4-206ENST00000461553 VSIG10LQ86VR7 867 aa16.09■□□□□ 0.17
USP4-206ENST00000461553 SESTD1Q86VW0 696 aa16.09■□□□□ 0.17
USP4-206ENST00000461553 RAB11FIP4Q86YS3 637 aa16.09■□□□□ 0.17
USP4-206ENST00000461553 RETREG2Q8NC44 543 aa16.09■□□□□ 0.17
USP4-206ENST00000461553 PTPRSQ13332 1948 aa16.09■□□□□ 0.17
USP4-206ENST00000461553 PRUNE2Q8WUY3 3088 aa16.08■□□□□ 0.17
USP4-206ENST00000461553 ZBBXA8MT70 800 aa16.08■□□□□ 0.16
USP4-206ENST00000461553 SORBS3O60504 671 aa16.08■□□□□ 0.16
USP4-206ENST00000461553 TGFB3P10600 412 aa16.08■□□□□ 0.16
USP4-206ENST00000461553 FOSL2P15408 326 aa16.08■□□□□ 0.16
USP4-206ENST00000461553 COL9A3Q14050 684 aaPredicted RBP16.08■□□□□ 0.16
USP4-206ENST00000461553 MFSD10Q14728 455 aa16.08■□□□□ 0.16
USP4-206ENST00000461553 PTGISQ16647 500 aa16.08■□□□□ 0.16
USP4-206ENST00000461553 SGMS1Q86VZ5 419 aa16.08■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms