RNA–Protein interactions for RNA: ENST00000452447.1

CHD3-206, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 5

Gene CHD3, Length 1,573 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-206ENST00000452447 MRVI1Q9Y6F6 885 aa14.93□□□□□ -0.02
CHD3-206ENST00000452447 TRIP12Q14669 1992 aaPredicted RBP14.92□□□□□ -0.02
CHD3-206ENST00000452447 CHMP4BP1P59074 171 aa14.92□□□□□ -0.02
CHD3-206ENST00000452447 RNF20Q5VTR2 975 aa14.92□□□□□ -0.02
CHD3-206ENST00000452447 NFRKBQ6P4R8 1299 aa14.92□□□□□ -0.02
CHD3-206ENST00000452447 GUCD1Q96NT3 240 aa14.92□□□□□ -0.02
CHD3-206ENST00000452447 MTIF3Q9H2K0 278 aaKnown RBP14.92□□□□□ -0.02
CHD3-206ENST00000452447 SEMA6BQ9H3T3 888 aa14.92□□□□□ -0.02
CHD3-206ENST00000452447 DDX41Q9UJV9 622 aaKnown RBP14.92□□□□□ -0.02
CHD3-206ENST00000452447 UMODL1Q5DID0 1318 aa14.92□□□□□ -0.02
CHD3-206ENST00000452447 EYSQ5T1H1 3165 aa14.91□□□□□ -0.02
CHD3-206ENST00000452447 UNC80Q8N2C7 3258 aa14.91□□□□□ -0.02
CHD3-206ENST00000452447 MMP3P08254 477 aa14.91□□□□□ -0.02
CHD3-206ENST00000452447 CYP2C9P11712 490 aa14.91□□□□□ -0.02
CHD3-206ENST00000452447 CASTP20810 708 aaKnown RBP14.91□□□□□ -0.02
CHD3-206ENST00000452447 GNAQP50148 359 aa14.91□□□□□ -0.02
CHD3-206ENST00000452447 ARHGAP1Q07960 439 aa14.91□□□□□ -0.02
CHD3-206ENST00000452447 PGM5Q15124 567 aa14.91□□□□□ -0.02
CHD3-206ENST00000452447 NECTIN1Q15223 517 aa14.91□□□□□ -0.02
CHD3-206ENST00000452447 FCHSD1Q86WN1 690 aa14.91□□□□□ -0.02
CHD3-206ENST00000452447 SKAP1Q86WV1 359 aa14.91□□□□□ -0.02
CHD3-206ENST00000452447 RPUSD2Q8IZ73 545 aaKnown RBP14.91□□□□□ -0.02
CHD3-206ENST00000452447 RRP36Q96EU6 259 aaKnown RBP14.91□□□□□ -0.02
CHD3-206ENST00000452447 LZTS2Q9BRK4 669 aa14.91□□□□□ -0.02
CHD3-206ENST00000452447 PDCD2LQ9BRP1 358 aa14.91□□□□□ -0.02
CHD3-206ENST00000452447 MYL10Q9BUA6 226 aa14.91□□□□□ -0.02
CHD3-206ENST00000452447 SEC63Q9UGP8 760 aaKnown RBP14.91□□□□□ -0.02
CHD3-206ENST00000452447 NOD1Q9Y239 953 aa14.91□□□□□ -0.02
CHD3-206ENST00000452447 SH2B2O14492 632 aaPredicted RBP14.9□□□□□ -0.02
CHD3-206ENST00000452447 FGBP02675 491 aa14.9□□□□□ -0.02
CHD3-206ENST00000452447 SMARCA1P28370 1054 aa14.9□□□□□ -0.02
CHD3-206ENST00000452447 PTPN11Q06124 597 aaPredicted RBP14.9□□□□□ -0.02
CHD3-206ENST00000452447 LAMC2Q13753 1193 aa14.9□□□□□ -0.02
CHD3-206ENST00000452447 DGKDQ16760 1214 aa14.9□□□□□ -0.02
CHD3-206ENST00000452447 KCNV1Q6PIU1 500 aa14.9□□□□□ -0.02
CHD3-206ENST00000452447 SPZ1Q9BXG8 430 aa14.9□□□□□ -0.02
CHD3-206ENST00000452447 WNT8AQ9H1J5 351 aa14.9□□□□□ -0.02
CHD3-206ENST00000452447 PRUNE2Q8WUY3 3088 aa14.9□□□□□ -0.02
CHD3-206ENST00000452447 TMEM265A0A087WTH1 108 aa14.9□□□□□ -0.02
CHD3-206ENST00000452447 CALM1P0DP23 149 aa14.9□□□□□ -0.02
CHD3-206ENST00000452447 CALM2P0DP24 149 aa14.9□□□□□ -0.02
CHD3-206ENST00000452447 CALM3P0DP25 149 aa14.9□□□□□ -0.02
CHD3-206ENST00000452447 DNAJB2P25686 324 aa14.9□□□□□ -0.02
CHD3-206ENST00000452447 CCND2P30279 289 aa14.9□□□□□ -0.02
CHD3-206ENST00000452447 LIFRP42702 1097 aa14.9□□□□□ -0.02
CHD3-206ENST00000452447 VSIG10LQ86VR7 867 aa14.9□□□□□ -0.02
CHD3-206ENST00000452447 DHX37Q8IY37 1157 aaKnown RBP14.9□□□□□ -0.02
CHD3-206ENST00000452447 PPP1R13LQ8WUF5 828 aa14.9□□□□□ -0.02
CHD3-206ENST00000452447 EMID1Q96A84 441 aaPredicted RBP14.9□□□□□ -0.02
CHD3-206ENST00000452447 CDX2Q99626 313 aaPredicted RBP14.9□□□□□ -0.02
CHD3-206ENST00000452447 TTYH1Q9H313 450 aaPredicted RBP14.9□□□□□ -0.02
CHD3-206ENST00000452447 SLC12A7Q9Y666 1083 aa14.9□□□□□ -0.02
CHD3-206ENST00000452447 CUL9Q8IWT3 2517 aa14.89□□□□□ -0.03
CHD3-206ENST00000452447 TGFB3P10600 412 aa14.89□□□□□ -0.03
CHD3-206ENST00000452447 RASIP1Q5U651 963 aa14.89□□□□□ -0.03
CHD3-206ENST00000452447 OTOP2Q7RTS6 562 aa14.89□□□□□ -0.03
CHD3-206ENST00000452447 RETREG2Q8NC44 543 aa14.89□□□□□ -0.03
CHD3-206ENST00000452447 HERVK_113Q902F9 699 aa14.89□□□□□ -0.03
CHD3-206ENST00000452447 CUL5Q93034 780 aa14.89□□□□□ -0.03
CHD3-206ENST00000452447 SCLYQ96I15 445 aa14.89□□□□□ -0.03
CHD3-206ENST00000452447 SCN5AQ14524 2016 aa14.88□□□□□ -0.03
CHD3-206ENST00000452447 CDC45O75419 566 aa14.88□□□□□ -0.03
CHD3-206ENST00000452447 RXRAP19793 462 aa14.88□□□□□ -0.03
CHD3-206ENST00000452447 SYNE3Q6ZMZ3 975 aa14.88□□□□□ -0.03
CHD3-206ENST00000452447 IL31RAQ8NI17 732 aa14.88□□□□□ -0.03
CHD3-206ENST00000452447 PPTC7Q8NI37 304 aa14.88□□□□□ -0.03
CHD3-206ENST00000452447 SMARCC2Q8TAQ2 1214 aa14.88□□□□□ -0.03
CHD3-206ENST00000452447 TIFAQ96CG3 184 aa14.88□□□□□ -0.03
CHD3-206ENST00000452447 CCDC136Q96JN2 1154 aa14.88□□□□□ -0.03
CHD3-206ENST00000452447 KATNAL1Q9BW62 490 aa14.88□□□□□ -0.03
CHD3-206ENST00000452447 LRRC2Q9BYS8 371 aa14.88□□□□□ -0.03
CHD3-206ENST00000452447 GRXCR1A8MXD5 290 aa14.87□□□□□ -0.03
CHD3-206ENST00000452447 RGS20O76081 388 aa14.87□□□□□ -0.03
CHD3-206ENST00000452447 PLEKHA8P1O95397 391 aa14.87□□□□□ -0.03
CHD3-206ENST00000452447 BFSP2Q13515 415 aa14.87□□□□□ -0.03
CHD3-206ENST00000452447 PTGISQ16647 500 aa14.87□□□□□ -0.03
CHD3-206ENST00000452447 GNPTABQ3T906 1256 aa14.87□□□□□ -0.03
CHD3-206ENST00000452447 MYSM1Q5VVJ2 828 aa14.87□□□□□ -0.03
CHD3-206ENST00000452447 C7orf31Q8N865 590 aa14.87□□□□□ -0.03
CHD3-206ENST00000452447 ZFP91Q96JP5 570 aaPredicted RBP14.87□□□□□ -0.03
CHD3-206ENST00000452447 SPATA33Q96N06 139 aa14.87□□□□□ -0.03
CHD3-206ENST00000452447 NEK1Q96PY6 1258 aa14.87□□□□□ -0.03
CHD3-206ENST00000452447 PITPNM1O00562 1244 aa14.86□□□□□ -0.03
CHD3-206ENST00000452447 PPFIA4O75335 1185 aa14.86□□□□□ -0.03
CHD3-206ENST00000452447 GGPS1O95749 300 aa14.86□□□□□ -0.03
CHD3-206ENST00000452447 PFKMP08237 780 aa14.86□□□□□ -0.03
CHD3-206ENST00000452447 COL9A3Q14050 684 aaPredicted RBP14.86□□□□□ -0.03
CHD3-206ENST00000452447 CELF3Q5SZQ8 465 aaKnown RBP14.86□□□□□ -0.03
CHD3-206ENST00000452447 DEFB128Q7Z7B8 93 aa14.86□□□□□ -0.03
CHD3-206ENST00000452447 SESTD1Q86VW0 696 aa14.86□□□□□ -0.03
CHD3-206ENST00000452447 RAB11FIP4Q86YS3 637 aa14.86□□□□□ -0.03
CHD3-206ENST00000452447 CMTR1Q8N1G2 835 aaKnown RBP14.86□□□□□ -0.03
CHD3-206ENST00000452447 SRBD1Q8N5C6 995 aaKnown RBP14.86□□□□□ -0.03
CHD3-206ENST00000452447 TET1Q8NFU7 2136 aa14.86□□□□□ -0.03
CHD3-206ENST00000452447 MYLIPQ8WY64 445 aa14.86□□□□□ -0.03
CHD3-206ENST00000452447 KAT2BQ92831 832 aa14.86□□□□□ -0.03
CHD3-206ENST00000452447 PBX4Q9BYU1 374 aa14.86□□□□□ -0.03
CHD3-206ENST00000452447 MLXIPQ9HAP2 919 aa14.86□□□□□ -0.03
CHD3-206ENST00000452447 CXXC1Q9P0U4 656 aaPredicted RBP14.86□□□□□ -0.03
CHD3-206ENST00000452447 MSRAQ9UJ68 235 aa14.86□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms