RNA–Protein interactions for RNA: ENST00000442151.6

CD44-211, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,825 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-211ENST00000442151 CDC37Q16543 378 aaPredicted RBP9.04□□□□□ -0.96
CD44-211ENST00000442151 C9orf50Q5SZB4 431 aa9.04□□□□□ -0.96
CD44-211ENST00000442151 TTC22Q5TAA0 569 aa9.04□□□□□ -0.96
CD44-211ENST00000442151 ARHGEF16Q5VV41 709 aa9.04□□□□□ -0.96
CD44-211ENST00000442151 Q7L0L9 218 aa9.04□□□□□ -0.96
CD44-211ENST00000442151 TBC1D10CQ8IV04 446 aa9.04□□□□□ -0.96
CD44-211ENST00000442151 ADGRF4Q8IZF3 695 aa9.04□□□□□ -0.96
CD44-211ENST00000442151 NCOA7Q8NI08 942 aa9.04□□□□□ -0.96
CD44-211ENST00000442151 PTCD2Q8WV60 388 aaKnown RBP9.04□□□□□ -0.96
CD44-211ENST00000442151 HERVK_113Q902F9 699 aa9.04□□□□□ -0.96
CD44-211ENST00000442151 SYMPKQ92797 1274 aaKnown RBP9.04□□□□□ -0.96
CD44-211ENST00000442151 ZKSCAN3Q9BRR0 538 aa9.04□□□□□ -0.96
CD44-211ENST00000442151 MTA3Q9BTC8 594 aa9.04□□□□□ -0.96
CD44-211ENST00000442151 KATNAL1Q9BW62 490 aa9.04□□□□□ -0.96
CD44-211ENST00000442151 UBA5Q9GZZ9 404 aa9.04□□□□□ -0.96
CD44-211ENST00000442151 PDGFCQ9NRA1 345 aa9.04□□□□□ -0.96
CD44-211ENST00000442151 NOD1Q9Y239 953 aa9.04□□□□□ -0.96
CD44-211ENST00000442151 IFIT3O14879 490 aaKnown RBP9.03□□□□□ -0.96
CD44-211ENST00000442151 EIF3JO75822 258 aaKnown RBP9.03□□□□□ -0.96
CD44-211ENST00000442151 EDNRBP24530 442 aa9.03□□□□□ -0.96
CD44-211ENST00000442151 LAMC2Q13753 1193 aa9.03□□□□□ -0.96
CD44-211ENST00000442151 USH1GQ495M9 461 aa9.03□□□□□ -0.96
CD44-211ENST00000442151 TMEM240Q5SV17 173 aa9.03□□□□□ -0.96
CD44-211ENST00000442151 CATIPQ7Z7H3 387 aa9.03□□□□□ -0.96
CD44-211ENST00000442151 TIFAQ96CG3 184 aa9.03□□□□□ -0.96
CD44-211ENST00000442151 GAS2L1Q99501 681 aaPredicted RBP9.03□□□□□ -0.96
CD44-211ENST00000442151 LZTS2Q9BRK4 669 aa9.03□□□□□ -0.96
CD44-211ENST00000442151 VAT1LQ9HCJ6 419 aa9.03□□□□□ -0.96
CD44-211ENST00000442151 NEDD4P46934 1319 aa9.03□□□□□ -0.96
CD44-211ENST00000442151 A6NJR5 290 aa9.03□□□□□ -0.96
CD44-211ENST00000442151 KLRF2D3W0D1 207 aa9.03□□□□□ -0.96
CD44-211ENST00000442151 CTAGE5O15320 804 aa9.03□□□□□ -0.96
CD44-211ENST00000442151 GOLGA8HP0CJ92 632 aa9.03□□□□□ -0.96
CD44-211ENST00000442151 FOSL2P15408 326 aa9.03□□□□□ -0.96
CD44-211ENST00000442151 FAM47CQ5HY64 1035 aa9.03□□□□□ -0.96
CD44-211ENST00000442151 ENAHQ8N8S7 591 aaPredicted RBP9.03□□□□□ -0.96
CD44-211ENST00000442151 RMDN3Q96TC7 470 aa9.03□□□□□ -0.96
CD44-211ENST00000442151 MAP3K14Q99558 947 aa9.03□□□□□ -0.96
CD44-211ENST00000442151 CDX2Q99626 313 aaPredicted RBP9.03□□□□□ -0.96
CD44-211ENST00000442151 BUD13Q9BRD0 619 aaKnown RBP eCLIP9.03□□□□□ -0.96
CD44-211ENST00000442151 PPP1R12CQ9BZL4 782 aa9.03□□□□□ -0.96
CD44-211ENST00000442151 ALDH8A1Q9H2A2 487 aaPredicted RBP9.03□□□□□ -0.96
CD44-211ENST00000442151 LTBP2Q14767 1821 aa9.02□□□□□ -0.97
CD44-211ENST00000442151 KIF28PB7ZC32 967 aa9.02□□□□□ -0.97
CD44-211ENST00000442151 ZBTB5O15062 677 aa9.02□□□□□ -0.97
CD44-211ENST00000442151 STAM2O75886 525 aa9.02□□□□□ -0.97
CD44-211ENST00000442151 TGFB3P10600 412 aa9.02□□□□□ -0.97
CD44-211ENST00000442151 CSF2RAP15509 400 aa9.02□□□□□ -0.97
CD44-211ENST00000442151 SMARCA1P28370 1054 aa9.02□□□□□ -0.97
CD44-211ENST00000442151 KIF5BP33176 963 aa9.02□□□□□ -0.97
CD44-211ENST00000442151 PURAQ00577 322 aaKnown RBP9.02□□□□□ -0.97
CD44-211ENST00000442151 WTAPQ15007 396 aa9.02□□□□□ -0.97
CD44-211ENST00000442151 DGKDQ16760 1214 aa9.02□□□□□ -0.97
CD44-211ENST00000442151 QRICH1Q2TAL8 776 aa9.02□□□□□ -0.97
CD44-211ENST00000442151 CASC1Q6TDU7 716 aa9.02□□□□□ -0.97
CD44-211ENST00000442151 SLC30A10Q6XR72 485 aa9.02□□□□□ -0.97
CD44-211ENST00000442151 ZNF365Q70YC5 407 aa9.02□□□□□ -0.97
CD44-211ENST00000442151 SYTL5Q8TDW5 730 aaPredicted RBP9.02□□□□□ -0.97
CD44-211ENST00000442151 JMJD4Q9H9V9 463 aa9.02□□□□□ -0.97
CD44-211ENST00000442151 SLC4A7Q9Y6M7 1214 aa9.02□□□□□ -0.97
CD44-211ENST00000442151 ASTN1O14525 1302 aa9.02□□□□□ -0.97
CD44-211ENST00000442151 GCOM1H8Y6P7 765 aaPredicted RBP9.01□□□□□ -0.97
CD44-211ENST00000442151 ADCY6O43306 1168 aa9.01□□□□□ -0.97
CD44-211ENST00000442151 CFBP00751 764 aa9.01□□□□□ -0.97
CD44-211ENST00000442151 POLR2MP0CAP2 368 aa9.01□□□□□ -0.97
CD44-211ENST00000442151 CALM1P0DP23 149 aa9.01□□□□□ -0.97
CD44-211ENST00000442151 CALM2P0DP24 149 aa9.01□□□□□ -0.97
CD44-211ENST00000442151 CALM3P0DP25 149 aa9.01□□□□□ -0.97
CD44-211ENST00000442151 DNAJB2P25686 324 aa9.01□□□□□ -0.97
CD44-211ENST00000442151 ITGB8P26012 769 aa9.01□□□□□ -0.97
CD44-211ENST00000442151 CHMLP26374 656 aa9.01□□□□□ -0.97
CD44-211ENST00000442151 CYP2C18P33260 490 aa9.01□□□□□ -0.97
CD44-211ENST00000442151 FBXO22Q8NEZ5 403 aa9.01□□□□□ -0.97
CD44-211ENST00000442151 MAFAQ8NHW3 353 aaPredicted RBP9.01□□□□□ -0.97
CD44-211ENST00000442151 CAGE1Q8TC20 777 aa9.01□□□□□ -0.97
CD44-211ENST00000442151 PHOSPHO2Q8TCD6 241 aa9.01□□□□□ -0.97
CD44-211ENST00000442151 CUL5Q93034 780 aa9.01□□□□□ -0.97
CD44-211ENST00000442151 FAM161BQ96MY7 647 aa9.01□□□□□ -0.97
CD44-211ENST00000442151 GUCD1Q96NT3 240 aa9.01□□□□□ -0.97
CD44-211ENST00000442151 ZNF576Q9H609 170 aa9.01□□□□□ -0.97
CD44-211ENST00000442151 SLC28A3Q9HAS3 691 aa9.01□□□□□ -0.97
CD44-211ENST00000442151 PCDHA1Q9Y5I3 950 aa9.01□□□□□ -0.97
CD44-211ENST00000442151 PNMA6FA0A0J9YX94 578 aa9.01□□□□□ -0.97
CD44-211ENST00000442151 PALM3A6NDB9 673 aaPredicted RBP9.01□□□□□ -0.97
CD44-211ENST00000442151 B4GALT4O60513 344 aa9.01□□□□□ -0.97
CD44-211ENST00000442151 EFCAB14O75071 495 aa9.01□□□□□ -0.97
CD44-211ENST00000442151 NR3C2P08235 984 aa9.01□□□□□ -0.97
CD44-211ENST00000442151 NBPF20Q3BBV1 942 aa9.01□□□□□ -0.97
CD44-211ENST00000442151 GNPTABQ3T906 1256 aa9.01□□□□□ -0.97
CD44-211ENST00000442151 RASIP1Q5U651 963 aa9.01□□□□□ -0.97
CD44-211ENST00000442151 RNF20Q5VTR2 975 aa9.01□□□□□ -0.97
CD44-211ENST00000442151 SYNE3Q6ZMZ3 975 aa9.01□□□□□ -0.97
CD44-211ENST00000442151 SEPT14Q6ZU15 432 aa9.01□□□□□ -0.97
CD44-211ENST00000442151 SESTD1Q86VW0 696 aa9.01□□□□□ -0.97
CD44-211ENST00000442151 PHF6Q8IWS0 365 aaKnown RBP eCLIP9.01□□□□□ -0.97
CD44-211ENST00000442151 DHX37Q8IY37 1157 aaKnown RBP9.01□□□□□ -0.97
CD44-211ENST00000442151 CTCFLQ8NI51 663 aaPredicted RBP9.01□□□□□ -0.97
CD44-211ENST00000442151 TAAR1Q96RJ0 339 aa9.01□□□□□ -0.97
CD44-211ENST00000442151 NOC4LQ9BVI4 516 aaKnown RBP9.01□□□□□ -0.97
CD44-211ENST00000442151 TRPV6Q9H1D0 765 aa9.01□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms