RNA–Protein interactions for RNA: ENST00000426576.5

CCDC88A-205, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 4,500 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-205ENST00000426576 RBAK-RBAKDNI3L0D1 243 aa3.14□□□□□ -1.91
CCDC88A-205ENST00000426576 PGK1P00558 417 aa3.14□□□□□ -1.91
CCDC88A-205ENST00000426576 MMP3P08254 477 aa3.14□□□□□ -1.91
CCDC88A-205ENST00000426576 HIBADHP31937 336 aaKnown RBP3.14□□□□□ -1.91
CCDC88A-205ENST00000426576 DUSP3P51452 185 aaPredicted RBP3.14□□□□□ -1.91
CCDC88A-205ENST00000426576 SMAD4Q13485 552 aaKnown RBP3.14□□□□□ -1.91
CCDC88A-205ENST00000426576 PRAMEF19Q5SWL8 479 aa3.14□□□□□ -1.91
CCDC88A-205ENST00000426576 C12orf54Q6X4T0 127 aa3.14□□□□□ -1.91
CCDC88A-205ENST00000426576 CACNA2D4Q7Z3S7 1137 aa3.14□□□□□ -1.91
CCDC88A-205ENST00000426576 FOXP4Q8IVH2 680 aaPredicted RBP3.14□□□□□ -1.91
CCDC88A-205ENST00000426576 TEX11Q8IYF3 940 aa3.14□□□□□ -1.91
CCDC88A-205ENST00000426576 FTSJ1Q9UET6 329 aa3.14□□□□□ -1.91
CCDC88A-205ENST00000426576 NCKAP1Q9Y2A7 1128 aa3.14□□□□□ -1.91
CCDC88A-205ENST00000426576 SUPT16HQ9Y5B9 1047 aaKnown RBP3.14□□□□□ -1.91
CCDC88A-205ENST00000426576 ATRNO75882 1429 aa3.14□□□□□ -1.91
CCDC88A-205ENST00000426576 CUX1P39880 1505 aa3.14□□□□□ -1.91
CCDC88A-205ENST00000426576 USP27XA6NNY8 438 aa3.14□□□□□ -1.91
CCDC88A-205ENST00000426576 TRIM6-TRIM34B2RNG4 842 aa3.14□□□□□ -1.91
CCDC88A-205ENST00000426576 ERVV-2B6SEH9 535 aa3.14□□□□□ -1.91
CCDC88A-205ENST00000426576 KPNA6O60684 536 aa3.14□□□□□ -1.91
CCDC88A-205ENST00000426576 RNASEH1O60930 286 aaKnown RBP3.14□□□□□ -1.91
CCDC88A-205ENST00000426576 STK10O94804 968 aaKnown RBP3.14□□□□□ -1.91
CCDC88A-205ENST00000426576 CAVIN2O95810 425 aa3.14□□□□□ -1.91
CCDC88A-205ENST00000426576 PDGFRBP09619 1106 aa3.14□□□□□ -1.91
CCDC88A-205ENST00000426576 CHRM1P11229 460 aaPredicted RBP3.14□□□□□ -1.91
CCDC88A-205ENST00000426576 ALAS1P13196 640 aa3.14□□□□□ -1.91
CCDC88A-205ENST00000426576 DESP17661 470 aa3.14□□□□□ -1.91
CCDC88A-205ENST00000426576 GCKP35557 465 aa3.14□□□□□ -1.91
CCDC88A-205ENST00000426576 ST8SIA6P61647 398 aa3.14□□□□□ -1.91
CCDC88A-205ENST00000426576 GOLGA8FQ08AF8 430 aa3.14□□□□□ -1.91
CCDC88A-205ENST00000426576 GOLGA8DPQ0D2H9 430 aa3.14□□□□□ -1.91
CCDC88A-205ENST00000426576 USP4Q13107 963 aa3.14□□□□□ -1.91
CCDC88A-205ENST00000426576 G3BP1Q13283 466 aaKnown RBP eCLIP3.14□□□□□ -1.91
CCDC88A-205ENST00000426576 GLB1LQ6UWU2 654 aa3.14□□□□□ -1.91
CCDC88A-205ENST00000426576 FAM114A1Q8IWE2 563 aa3.14□□□□□ -1.91
CCDC88A-205ENST00000426576 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP3.14□□□□□ -1.91
CCDC88A-205ENST00000426576 MTMR14Q8NCE2 650 aa3.14□□□□□ -1.91
CCDC88A-205ENST00000426576 ZSCAN18Q8TBC5 510 aaPredicted RBP3.14□□□□□ -1.91
CCDC88A-205ENST00000426576 FAM20AQ96MK3 541 aa3.14□□□□□ -1.91
CCDC88A-205ENST00000426576 ADAM19Q9H013 955 aa3.14□□□□□ -1.91
CCDC88A-205ENST00000426576 ZNF395Q9H8N7 513 aaPredicted RBP3.14□□□□□ -1.91
CCDC88A-205ENST00000426576 ANKHD1Q8IWZ3 2542 aaKnown RBP3.14□□□□□ -1.91
CCDC88A-205ENST00000426576 RTTNQ86VV8 2226 aa3.14□□□□□ -1.91
CCDC88A-205ENST00000426576 KIF21BO75037 1637 aa3.14□□□□□ -1.91
CCDC88A-205ENST00000426576 PRR23AA6NEV1 266 aa3.14□□□□□ -1.91
CCDC88A-205ENST00000426576 ADH1AP07327 375 aa3.14□□□□□ -1.91
CCDC88A-205ENST00000426576 MYCLP12524 364 aaPredicted RBP3.14□□□□□ -1.91
CCDC88A-205ENST00000426576 SCG2P13521 617 aa3.14□□□□□ -1.91
CCDC88A-205ENST00000426576 CSF2RAP15509 400 aa3.14□□□□□ -1.91
CCDC88A-205ENST00000426576 ZNF18P17022 549 aa3.14□□□□□ -1.91
CCDC88A-205ENST00000426576 NOS2P35228 1153 aa3.14□□□□□ -1.91
CCDC88A-205ENST00000426576 STK11IPQ8N1F8 1099 aa3.14□□□□□ -1.91
CCDC88A-205ENST00000426576 ARL14Q8N4G2 192 aa3.14□□□□□ -1.91
CCDC88A-205ENST00000426576 WDR66Q8TBY9 1149 aa3.14□□□□□ -1.91
CCDC88A-205ENST00000426576 ZNF558Q96NG5 402 aa3.14□□□□□ -1.91
CCDC88A-205ENST00000426576 CDC6Q99741 560 aa3.14□□□□□ -1.91
CCDC88A-205ENST00000426576 SLC4A5Q9BY07 1137 aa3.14□□□□□ -1.91
CCDC88A-205ENST00000426576 COA1Q9GZY4 146 aa3.14□□□□□ -1.91
CCDC88A-205ENST00000426576 TBC1D17Q9HA65 648 aa3.14□□□□□ -1.91
CCDC88A-205ENST00000426576 STIM2Q9P246 746 aa3.14□□□□□ -1.91
CCDC88A-205ENST00000426576 RUVBL2Q9Y230 463 aaKnown RBP3.14□□□□□ -1.91
CCDC88A-205ENST00000426576 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP3.14□□□□□ -1.91
CCDC88A-205ENST00000426576 IGF2BP3O00425 579 aaKnown RBP eCLIP3.13□□□□□ -1.91
CCDC88A-205ENST00000426576 DNM1LO00429 736 aa3.13□□□□□ -1.91
CCDC88A-205ENST00000426576 KATNA1O75449 491 aa3.13□□□□□ -1.91
CCDC88A-205ENST00000426576 HLA-EP13747 358 aa3.13□□□□□ -1.91
CCDC88A-205ENST00000426576 KIF5BP33176 963 aa3.13□□□□□ -1.91
CCDC88A-205ENST00000426576 MAGEA9P43362 315 aa3.13□□□□□ -1.91
CCDC88A-205ENST00000426576 TRAPPC10P48553 1259 aa3.13□□□□□ -1.91
CCDC88A-205ENST00000426576 PLEKHG6Q3KR16 790 aa3.13□□□□□ -1.91
CCDC88A-205ENST00000426576 TTC39AQ5SRH9 613 aa3.13□□□□□ -1.91
CCDC88A-205ENST00000426576 KCNT2Q6UVM3 1135 aa3.13□□□□□ -1.91
CCDC88A-205ENST00000426576 TREML1Q86YW5 311 aa3.13□□□□□ -1.91
CCDC88A-205ENST00000426576 DCLK2Q8N568 766 aa3.13□□□□□ -1.91
CCDC88A-205ENST00000426576 SCFD1Q8WVM8 642 aa3.13□□□□□ -1.91
CCDC88A-205ENST00000426576 PIGBQ92521 554 aa3.13□□□□□ -1.91
CCDC88A-205ENST00000426576 TDRD3Q9H7E2 651 aaKnown RBP3.13□□□□□ -1.91
CCDC88A-205ENST00000426576 VPS45Q9NRW7 570 aa3.13□□□□□ -1.91
CCDC88A-205ENST00000426576 BMP2KQ9NSY1 1161 aaPredicted RBP3.13□□□□□ -1.91
CCDC88A-205ENST00000426576 MYO6Q9UM54 1294 aa3.13□□□□□ -1.91
CCDC88A-205ENST00000426576 POLEQ07864 2286 aa3.13□□□□□ -1.91
CCDC88A-205ENST00000426576 F5P12259 2224 aa3.13□□□□□ -1.91
CCDC88A-205ENST00000426576 HFM1A2PYH4 1435 aa3.13□□□□□ -1.91
CCDC88A-205ENST00000426576 NOS1P29475 1434 aa3.13□□□□□ -1.91
CCDC88A-205ENST00000426576 KANSL1LA0AUZ9 987 aa3.13□□□□□ -1.91
CCDC88A-205ENST00000426576 TBKBP1A7MCY6 615 aa3.13□□□□□ -1.91
CCDC88A-205ENST00000426576 STRNO43815 780 aa3.13□□□□□ -1.91
CCDC88A-205ENST00000426576 RETP07949 1114 aa3.13□□□□□ -1.91
CCDC88A-205ENST00000426576 ERCC3P19447 782 aa3.13□□□□□ -1.91
CCDC88A-205ENST00000426576 GTF2F1P35269 517 aaKnown RBP eCLIP3.13□□□□□ -1.91
CCDC88A-205ENST00000426576 RECQLP46063 649 aaPredicted RBP3.13□□□□□ -1.91
CCDC88A-205ENST00000426576 FMR1Q06787 632 aaKnown RBP eCLIP3.13□□□□□ -1.91
CCDC88A-205ENST00000426576 CYP4F3Q08477 520 aa3.13□□□□□ -1.91
CCDC88A-205ENST00000426576 TMEM62Q0P6H9 643 aa3.13□□□□□ -1.91
CCDC88A-205ENST00000426576 COL28A1Q2UY09 1125 aa3.13□□□□□ -1.91
CCDC88A-205ENST00000426576 TMC5Q6UXY8 1006 aa3.13□□□□□ -1.91
CCDC88A-205ENST00000426576 SPATA20Q8TB22 786 aa3.13□□□□□ -1.91
CCDC88A-205ENST00000426576 TM9SF4Q92544 642 aa3.13□□□□□ -1.91
CCDC88A-205ENST00000426576 EDAQ92838 391 aa3.13□□□□□ -1.91
CCDC88A-205ENST00000426576 AHCYL2Q96HN2 611 aaKnown RBP3.13□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms