RNA–Protein interactions for RNA: ENST00000417656.6

SKA1-203, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 2 BASIC

Gene SKA1, Length 1,095 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-203ENST00000417656 CCND2P30279 289 aa14.31□□□□□ -0.12
SKA1-203ENST00000417656 MNX1P50219 401 aaPredicted RBP14.31□□□□□ -0.12
SKA1-203ENST00000417656 TNFAIP2Q03169 654 aa14.31□□□□□ -0.12
SKA1-203ENST00000417656 STXBP2Q15833 593 aa14.31□□□□□ -0.12
SKA1-203ENST00000417656 SEPT14Q6ZU15 432 aa14.31□□□□□ -0.12
SKA1-203ENST00000417656 ANKLE1Q8NAG6 615 aa14.31□□□□□ -0.12
SKA1-203ENST00000417656 ZSCAN31Q96LW9 406 aaPredicted RBP14.31□□□□□ -0.12
SKA1-203ENST00000417656 ANO3Q9BYT9 981 aa14.31□□□□□ -0.12
SKA1-203ENST00000417656 ZMYND12Q9H0C1 365 aa14.31□□□□□ -0.12
SKA1-203ENST00000417656 C6orf50Q9HD87 102 aa14.31□□□□□ -0.12
SKA1-203ENST00000417656 SH2B1Q9NRF2 756 aaPredicted RBP14.31□□□□□ -0.12
SKA1-203ENST00000417656 ORC3Q9UBD5 711 aaPredicted RBP14.31□□□□□ -0.12
SKA1-203ENST00000417656 PCDHA6Q9UN73 950 aa14.31□□□□□ -0.12
SKA1-203ENST00000417656 PCDHA8Q9Y5H6 950 aa14.31□□□□□ -0.12
SKA1-203ENST00000417656 RBM47A0AV96 593 aaKnown RBP14.3□□□□□ -0.12
SKA1-203ENST00000417656 MYADML2A6NDP7 307 aa14.3□□□□□ -0.12
SKA1-203ENST00000417656 ADAMTS4O75173 837 aa14.3□□□□□ -0.12
SKA1-203ENST00000417656 DUSP11O75319 330 aaKnown RBP14.3□□□□□ -0.12
SKA1-203ENST00000417656 ARIH2O95376 493 aa14.3□□□□□ -0.12
SKA1-203ENST00000417656 FDPSP14324 419 aaKnown RBP14.3□□□□□ -0.12
SKA1-203ENST00000417656 CLK2P49760 499 aaKnown RBP14.3□□□□□ -0.12
SKA1-203ENST00000417656 IRX5P78411 483 aaPredicted RBP14.3□□□□□ -0.12
SKA1-203ENST00000417656 LRRC41Q15345 812 aa14.3□□□□□ -0.12
SKA1-203ENST00000417656 JAKMIP3Q5VZ66 844 aa14.3□□□□□ -0.12
SKA1-203ENST00000417656 UBE2Q1Q7Z7E8 422 aa14.3□□□□□ -0.12
SKA1-203ENST00000417656 TLK2Q86UE8 772 aa14.3□□□□□ -0.12
SKA1-203ENST00000417656 REXO1Q8N1G1 1221 aaKnown RBP14.3□□□□□ -0.12
SKA1-203ENST00000417656 RASGRP4Q8TDF6 673 aa14.3□□□□□ -0.12
SKA1-203ENST00000417656 SCFD2Q8WU76 684 aa14.3□□□□□ -0.12
SKA1-203ENST00000417656 WDR11Q9BZH6 1224 aa14.3□□□□□ -0.12
SKA1-203ENST00000417656 GLT8D2Q9H1C3 349 aa14.3□□□□□ -0.12
SKA1-203ENST00000417656 SH3GLB2Q9NR46 395 aa14.3□□□□□ -0.12
SKA1-203ENST00000417656 GNEQ9Y223 722 aaKnown RBP14.3□□□□□ -0.12
SKA1-203ENST00000417656 ALPK3Q96L96 1907 aa14.29□□□□□ -0.12
SKA1-203ENST00000417656 DNM1LO00429 736 aa14.29□□□□□ -0.12
SKA1-203ENST00000417656 EIF3JO75822 258 aaKnown RBP14.29□□□□□ -0.12
SKA1-203ENST00000417656 RGS19P49795 217 aa14.29□□□□□ -0.12
SKA1-203ENST00000417656 FOSBP53539 338 aa14.29□□□□□ -0.12
SKA1-203ENST00000417656 NLRP5P59047 1200 aa14.29□□□□□ -0.12
SKA1-203ENST00000417656 MRPS9P82933 396 aaKnown RBP14.29□□□□□ -0.12
SKA1-203ENST00000417656 AP3B2Q13367 1082 aa14.29□□□□□ -0.12
SKA1-203ENST00000417656 PCNX4Q63HM2 1172 aa14.29□□□□□ -0.12
SKA1-203ENST00000417656 IQSEC1Q6DN90 963 aa14.29□□□□□ -0.12
SKA1-203ENST00000417656 VSIG10LQ86VR7 867 aa14.29□□□□□ -0.12
SKA1-203ENST00000417656 TEX2Q8IWB9 1127 aa14.29□□□□□ -0.12
SKA1-203ENST00000417656 COPS5Q92905 334 aa14.29□□□□□ -0.12
SKA1-203ENST00000417656 PAWRQ96IZ0 340 aaKnown RBP14.29□□□□□ -0.12
SKA1-203ENST00000417656 ALG1Q9BT22 464 aa14.29□□□□□ -0.12
SKA1-203ENST00000417656 UPF3AQ9H1J1 476 aaKnown RBP14.29□□□□□ -0.12
SKA1-203ENST00000417656 EHMT1Q9H9B1 1298 aa14.29□□□□□ -0.12
SKA1-203ENST00000417656 GJB4Q9NTQ9 266 aa14.29□□□□□ -0.12
SKA1-203ENST00000417656 MYH7BA7E2Y1 1941 aa14.29□□□□□ -0.12
SKA1-203ENST00000417656 KBTBD13C9JR72 458 aa14.28□□□□□ -0.12
SKA1-203ENST00000417656 RGS20O76081 388 aa14.28□□□□□ -0.12
SKA1-203ENST00000417656 C6orf222P0C671 652 aaPredicted RBP14.28□□□□□ -0.12
SKA1-203ENST00000417656 TXNP10599 105 aaKnown RBP14.28□□□□□ -0.12
SKA1-203ENST00000417656 CAPN2P17655 700 aa14.28□□□□□ -0.12
SKA1-203ENST00000417656 GNA11P29992 359 aa14.28□□□□□ -0.12
SKA1-203ENST00000417656 TTLL4Q14679 1199 aa14.28□□□□□ -0.12
SKA1-203ENST00000417656 DUSP28Q4G0W2 176 aa14.28□□□□□ -0.12
SKA1-203ENST00000417656 ARRDC4Q8NCT1 418 aa14.28□□□□□ -0.12
SKA1-203ENST00000417656 IL27Q8NEV9 243 aa14.28□□□□□ -0.12
SKA1-203ENST00000417656 WASF1Q92558 559 aa14.28□□□□□ -0.12
SKA1-203ENST00000417656 TMX3Q96JJ7 454 aa14.28□□□□□ -0.12
SKA1-203ENST00000417656 DOCK5Q9H7D0 1870 aa14.28□□□□□ -0.12
SKA1-203ENST00000417656 KCNJ14Q9UNX9 436 aa14.28□□□□□ -0.12
SKA1-203ENST00000417656 MRVI1Q9Y6F6 885 aa14.28□□□□□ -0.12
SKA1-203ENST00000417656 CTAGE5O15320 804 aa14.27□□□□□ -0.13
SKA1-203ENST00000417656 DYNC1LI2O43237 492 aaPredicted RBP14.27□□□□□ -0.13
SKA1-203ENST00000417656 FOSP01100 380 aaPredicted RBP14.27□□□□□ -0.13
SKA1-203ENST00000417656 SREBF1P36956 1147 aa14.27□□□□□ -0.13
SKA1-203ENST00000417656 MCM2P49736 904 aa14.27□□□□□ -0.13
SKA1-203ENST00000417656 GJA9P57773 515 aa14.27□□□□□ -0.13
SKA1-203ENST00000417656 BEX3Q00994 111 aa14.27□□□□□ -0.13
SKA1-203ENST00000417656 NPY5RQ15761 445 aa14.27□□□□□ -0.13
SKA1-203ENST00000417656 LY6KQ17RY6 165 aa14.27□□□□□ -0.13
SKA1-203ENST00000417656 CCDC62Q6P9F0 684 aa14.27□□□□□ -0.13
SKA1-203ENST00000417656 RNF180Q86T96 592 aa14.27□□□□□ -0.13
SKA1-203ENST00000417656 DAGLBQ8NCG7 672 aa14.27□□□□□ -0.13
SKA1-203ENST00000417656 OR6J1Q8NGC5 347 aa14.27□□□□□ -0.13
SKA1-203ENST00000417656 BICD2Q8TD16 824 aa14.27□□□□□ -0.13
SKA1-203ENST00000417656 INPP4AQ96PE3 977 aaPredicted RBP14.27□□□□□ -0.13
SKA1-203ENST00000417656 LLPHQ9BRT6 129 aaKnown RBP14.27□□□□□ -0.13
SKA1-203ENST00000417656 C11orf49Q9H6J7 331 aa14.27□□□□□ -0.13
SKA1-203ENST00000417656 SPC25Q9HBM1 224 aa14.27□□□□□ -0.13
SKA1-203ENST00000417656 RTEL1Q9NZ71 1219 aa14.27□□□□□ -0.13
SKA1-203ENST00000417656 PCDHA4Q9UN74 947 aa14.27□□□□□ -0.13
SKA1-203ENST00000417656 NKRFO15226 690 aaKnown RBP eCLIP14.26□□□□□ -0.13
SKA1-203ENST00000417656 STAM2O75886 525 aa14.26□□□□□ -0.13
SKA1-203ENST00000417656 PRR29P0C7W0 189 aa14.26□□□□□ -0.13
SKA1-203ENST00000417656 COL6A1P12109 1028 aa14.26□□□□□ -0.13
SKA1-203ENST00000417656 UBA1P22314 1058 aaKnown RBP14.26□□□□□ -0.13
SKA1-203ENST00000417656 CST5P28325 142 aaPredicted RBP14.26□□□□□ -0.13
SKA1-203ENST00000417656 SEMA3FQ13275 785 aa14.26□□□□□ -0.13
SKA1-203ENST00000417656 FSCN1Q16658 493 aaKnown RBP14.26□□□□□ -0.13
SKA1-203ENST00000417656 GNPTABQ3T906 1256 aa14.26□□□□□ -0.13
SKA1-203ENST00000417656 XRRA1Q6P2D8 792 aa14.26□□□□□ -0.13
SKA1-203ENST00000417656 NECAB2Q7Z6G3 386 aa14.26□□□□□ -0.13
SKA1-203ENST00000417656 BLIDQ8IZY5 108 aa14.26□□□□□ -0.13
SKA1-203ENST00000417656 FAM177A1Q8N128 213 aaPredicted RBP14.26□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms