RNA–Protein interactions for RNA: ENST00000409251.7

PTPRN-202, Transcript of protein tyrosine phosphatase, receptor type N, humanhuman

TSL 1 (best) BASIC

Gene PTPRN, Length 3,622 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRN-202ENST00000409251 MICALCLQ6ZW33 695 aa14.33□□□□□ -0.11
PTPRN-202ENST00000409251 PNMA1Q8ND90 353 aa14.33□□□□□ -0.11
PTPRN-202ENST00000409251 UBLCP1Q8WVY7 318 aaPredicted RBP14.33□□□□□ -0.11
PTPRN-202ENST00000409251 HPS3Q969F9 1004 aa14.33□□□□□ -0.11
PTPRN-202ENST00000409251 ZIM3Q96PE6 472 aa14.33□□□□□ -0.11
PTPRN-202ENST00000409251 OPLAHO14841 1288 aa14.33□□□□□ -0.12
PTPRN-202ENST00000409251 LIFRP42702 1097 aa14.33□□□□□ -0.12
PTPRN-202ENST00000409251 CARSP49589 748 aaKnown RBP14.33□□□□□ -0.12
PTPRN-202ENST00000409251 KRT83P78385 493 aa14.33□□□□□ -0.12
PTPRN-202ENST00000409251 PPP1R7Q15435 360 aa14.33□□□□□ -0.12
PTPRN-202ENST00000409251 TRADDQ15628 312 aa14.33□□□□□ -0.12
PTPRN-202ENST00000409251 NLGN1Q8N2Q7 840 aa14.33□□□□□ -0.12
PTPRN-202ENST00000409251 KRT12Q99456 494 aa14.33□□□□□ -0.12
PTPRN-202ENST00000409251 GPCPD1Q9NPB8 672 aa14.33□□□□□ -0.12
PTPRN-202ENST00000409251 USP40Q9NVE5 1235 aa14.33□□□□□ -0.12
PTPRN-202ENST00000409251 ATF5Q9Y2D1 282 aaPredicted RBP14.33□□□□□ -0.12
PTPRN-202ENST00000409251 ACTN4O43707 911 aaKnown RBP14.33□□□□□ -0.12
PTPRN-202ENST00000409251 USO1O60763 962 aaKnown RBP14.33□□□□□ -0.12
PTPRN-202ENST00000409251 ZBTB7AO95365 584 aa14.33□□□□□ -0.12
PTPRN-202ENST00000409251 MMP1P03956 469 aa14.33□□□□□ -0.12
PTPRN-202ENST00000409251 ELF1P32519 619 aa14.33□□□□□ -0.12
PTPRN-202ENST00000409251 NFIAQ12857 509 aa14.33□□□□□ -0.12
PTPRN-202ENST00000409251 CACNA2D4Q7Z3S7 1137 aa14.33□□□□□ -0.12
PTPRN-202ENST00000409251 ADAT2Q7Z6V5 191 aaKnown RBP14.33□□□□□ -0.12
PTPRN-202ENST00000409251 DNAAF5Q86Y56 855 aa14.33□□□□□ -0.12
PTPRN-202ENST00000409251 CSGALNACT2Q8N6G5 542 aa14.33□□□□□ -0.12
PTPRN-202ENST00000409251 NHEJ1Q9H9Q4 299 aaPredicted RBP14.33□□□□□ -0.12
PTPRN-202ENST00000409251 REXO2Q9Y3B8 237 aaKnown RBP14.33□□□□□ -0.12
PTPRN-202ENST00000409251 MEFVO15553 781 aaPredicted RBP14.32□□□□□ -0.12
PTPRN-202ENST00000409251 BUB1BO60566 1050 aaPredicted RBP14.32□□□□□ -0.12
PTPRN-202ENST00000409251 ERCC5P28715 1186 aaPredicted RBP14.32□□□□□ -0.12
PTPRN-202ENST00000409251 SLC27A3Q5K4L6 730 aa14.32□□□□□ -0.12
PTPRN-202ENST00000409251 CERS5Q8N5B7 392 aa14.32□□□□□ -0.12
PTPRN-202ENST00000409251 MICAL1Q8TDZ2 1067 aa14.32□□□□□ -0.12
PTPRN-202ENST00000409251 KANSL2Q9H9L4 492 aa14.32□□□□□ -0.12
PTPRN-202ENST00000409251 CAPN6Q9Y6Q1 641 aa14.32□□□□□ -0.12
PTPRN-202ENST00000409251 RAD17O75943 681 aa14.32□□□□□ -0.12
PTPRN-202ENST00000409251 HEXIM1O94992 359 aaKnown RBP14.32□□□□□ -0.12
PTPRN-202ENST00000409251 FAM153BP0C7A2 387 aa14.32□□□□□ -0.12
PTPRN-202ENST00000409251 NR1D1P20393 614 aa14.32□□□□□ -0.12
PTPRN-202ENST00000409251 ATP2B4P23634 1241 aa14.32□□□□□ -0.12
PTPRN-202ENST00000409251 RASSF7Q02833 373 aa14.32□□□□□ -0.12
PTPRN-202ENST00000409251 FAM153CQ494X1 144 aa14.32□□□□□ -0.12
PTPRN-202ENST00000409251 TTMPQ5BVD1 217 aa14.32□□□□□ -0.12
PTPRN-202ENST00000409251 TCP11X2Q5H9J9 407 aa14.32□□□□□ -0.12
PTPRN-202ENST00000409251 SGMS1Q86VZ5 419 aa14.32□□□□□ -0.12
PTPRN-202ENST00000409251 SUGP1Q8IWZ8 645 aaKnown RBP14.32□□□□□ -0.12
PTPRN-202ENST00000409251 ZFPM1Q8IX07 1006 aa14.32□□□□□ -0.12
PTPRN-202ENST00000409251 WASF1Q92558 559 aa14.32□□□□□ -0.12
PTPRN-202ENST00000409251 EYA3Q99504 573 aa14.32□□□□□ -0.12
PTPRN-202ENST00000409251 GOLPH3Q9H4A6 298 aa14.32□□□□□ -0.12
PTPRN-202ENST00000409251 FAM153AQ9UHL3 310 aa14.32□□□□□ -0.12
PTPRN-202ENST00000409251 RTL9Q8NET4 1388 aa14.32□□□□□ -0.12
PTPRN-202ENST00000409251 BBOX1O75936 387 aa14.32□□□□□ -0.12
PTPRN-202ENST00000409251 SRGNP10124 158 aa14.32□□□□□ -0.12
PTPRN-202ENST00000409251 IFNAR1P17181 557 aa14.32□□□□□ -0.12
PTPRN-202ENST00000409251 PRCPP42785 496 aa14.32□□□□□ -0.12
PTPRN-202ENST00000409251 SNAP25P60880 206 aa14.32□□□□□ -0.12
PTPRN-202ENST00000409251 HERVK_113P62684 666 aa14.32□□□□□ -0.12
PTPRN-202ENST00000409251 RBM26Q5T8P6 1007 aaKnown RBP14.32□□□□□ -0.12
PTPRN-202ENST00000409251 TRAPPC11Q7Z392 1133 aa14.32□□□□□ -0.12
PTPRN-202ENST00000409251 SHISA4Q96DD7 197 aa14.32□□□□□ -0.12
PTPRN-202ENST00000409251 IL17RBQ9NRM6 502 aa14.32□□□□□ -0.12
PTPRN-202ENST00000409251 CCDC196A0A1B0GTZ2 297 aa14.31□□□□□ -0.12
PTPRN-202ENST00000409251 ENO4A6NNW6 628 aa14.31□□□□□ -0.12
PTPRN-202ENST00000409251 TMCO5BA8MYB1 307 aa14.31□□□□□ -0.12
PTPRN-202ENST00000409251 FMNL1O95466 1100 aaPredicted RBP14.31□□□□□ -0.12
PTPRN-202ENST00000409251 LSP1P33241 339 aa14.31□□□□□ -0.12
PTPRN-202ENST00000409251 MDM2Q00987 491 aaPredicted RBP14.31□□□□□ -0.12
PTPRN-202ENST00000409251 SEC23AQ15436 765 aa14.31□□□□□ -0.12
PTPRN-202ENST00000409251 MAEAQ7L5Y9 396 aa14.31□□□□□ -0.12
PTPRN-202ENST00000409251 TUBBP07437 444 aa14.31□□□□□ -0.12
PTPRN-202ENST00000409251 SLC16A2P36021 539 aa14.31□□□□□ -0.12
PTPRN-202ENST00000409251 IFFO1Q0D2I5 559 aa14.31□□□□□ -0.12
PTPRN-202ENST00000409251 NAA35Q5VZE5 725 aa14.31□□□□□ -0.12
PTPRN-202ENST00000409251 HIBCHQ6NVY1 386 aaPredicted RBP14.31□□□□□ -0.12
PTPRN-202ENST00000409251 CCDC13Q8IYE1 715 aa14.31□□□□□ -0.12
PTPRN-202ENST00000409251 ZKSCAN4Q969J2 545 aaPredicted RBP14.31□□□□□ -0.12
PTPRN-202ENST00000409251 NOC4LQ9BVI4 516 aaKnown RBP14.31□□□□□ -0.12
PTPRN-202ENST00000409251 DONSONQ9NYP3 566 aa14.31□□□□□ -0.12
PTPRN-202ENST00000409251 NWD2Q9ULI1 1742 aa14.31□□□□□ -0.12
PTPRN-202ENST00000409251 CLRN2A0PK11 232 aa14.3□□□□□ -0.12
PTPRN-202ENST00000409251 ZNF772Q68DY9 489 aaPredicted RBP14.3□□□□□ -0.12
PTPRN-202ENST00000409251 WDR93Q6P2C0 686 aa14.3□□□□□ -0.12
PTPRN-202ENST00000409251 RRAGAQ7L523 313 aa14.3□□□□□ -0.12
PTPRN-202ENST00000409251 SPATA4Q8NEY3 305 aa14.3□□□□□ -0.12
PTPRN-202ENST00000409251 CCT8L2Q96SF2 557 aa14.3□□□□□ -0.12
PTPRN-202ENST00000409251 SELENOSQ9BQE4 189 aa14.3□□□□□ -0.12
PTPRN-202ENST00000409251 BRIP1Q9BX63 1249 aa14.3□□□□□ -0.12
PTPRN-202ENST00000409251 ZBTB12Q9Y330 459 aaPredicted RBP14.3□□□□□ -0.12
PTPRN-202ENST00000409251 H0YIN7 160 aa14.3□□□□□ -0.12
PTPRN-202ENST00000409251 DEXIO95424 95 aa14.3□□□□□ -0.12
PTPRN-202ENST00000409251 TAL1P17542 331 aaPredicted RBP14.3□□□□□ -0.12
PTPRN-202ENST00000409251 ADRA2BP18089 450 aa14.3□□□□□ -0.12
PTPRN-202ENST00000409251 TROAPQ12815 778 aa14.3□□□□□ -0.12
PTPRN-202ENST00000409251 PRPF4BQ13523 1007 aaKnown RBP14.3□□□□□ -0.12
PTPRN-202ENST00000409251 DDX42Q86XP3 938 aaKnown RBP eCLIP14.3□□□□□ -0.12
PTPRN-202ENST00000409251 DDX4Q9NQI0 724 aaKnown RBP14.3□□□□□ -0.12
PTPRN-202ENST00000409251 ATP8A2Q9NTI2 1148 aa14.3□□□□□ -0.12
PTPRN-202ENST00000409251 RBM12Q9NTZ6 932 aaKnown RBP14.3□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms