RNA–Protein interactions for RNA: ENST00000398452.6

SKA1-202, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SKA1, Length 979 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-202ENST00000398452 SREBF1P36956 1147 aa16.12■□□□□ 0.17
SKA1-202ENST00000398452 TOB1P50616 345 aaPredicted RBP16.12■□□□□ 0.17
SKA1-202ENST00000398452 GHRHRQ02643 423 aa16.12■□□□□ 0.17
SKA1-202ENST00000398452 TPRNQ4KMQ1 711 aa16.12■□□□□ 0.17
SKA1-202ENST00000398452 TMEM87AQ8NBN3 555 aa16.12■□□□□ 0.17
SKA1-202ENST00000398452 NSUN6Q8TEA1 469 aaKnown RBP16.12■□□□□ 0.17
SKA1-202ENST00000398452 TBC1D5Q92609 795 aa16.12■□□□□ 0.17
SKA1-202ENST00000398452 CHAMP1Q96JM3 812 aa16.12■□□□□ 0.17
SKA1-202ENST00000398452 RMDN3Q96TC7 470 aa16.12■□□□□ 0.17
SKA1-202ENST00000398452 FTOQ9C0B1 505 aaKnown RBP eCLIP16.12■□□□□ 0.17
SKA1-202ENST00000398452 TXNRD2Q9NNW7 524 aa16.12■□□□□ 0.17
SKA1-202ENST00000398452 A1CFQ9NQ94 594 aaKnown RBP16.12■□□□□ 0.17
SKA1-202ENST00000398452 PARP14Q460N5 1801 aa16.12■□□□□ 0.17
SKA1-202ENST00000398452 ADAMTS3O15072 1205 aa16.11■□□□□ 0.17
SKA1-202ENST00000398452 UBE2HP62256 183 aa16.11■□□□□ 0.17
SKA1-202ENST00000398452 NBR1Q14596 966 aa16.11■□□□□ 0.17
SKA1-202ENST00000398452 TMEM266Q2M3C6 531 aa16.11■□□□□ 0.17
SKA1-202ENST00000398452 SKOR2Q2VWA4 1001 aaPredicted RBP16.11■□□□□ 0.17
SKA1-202ENST00000398452 NOM1Q5C9Z4 860 aaKnown RBP16.11■□□□□ 0.17
SKA1-202ENST00000398452 PPP4R3AQ6IN85 833 aa16.11■□□□□ 0.17
SKA1-202ENST00000398452 MOXD1Q6UVY6 613 aa16.11■□□□□ 0.17
SKA1-202ENST00000398452 SLC30A10Q6XR72 485 aa16.11■□□□□ 0.17
SKA1-202ENST00000398452 SLC5A4Q9NY91 659 aa16.11■□□□□ 0.17
SKA1-202ENST00000398452 CYP39A1Q9NYL5 469 aa16.11■□□□□ 0.17
SKA1-202ENST00000398452 DDX25Q9UHL0 483 aaKnown RBP16.11■□□□□ 0.17
SKA1-202ENST00000398452 CPA4Q9UI42 421 aa16.11■□□□□ 0.17
SKA1-202ENST00000398452 RLFQ13129 1914 aa16.1■□□□□ 0.17
SKA1-202ENST00000398452 STRNO43815 780 aa16.1■□□□□ 0.17
SKA1-202ENST00000398452 TLR2O60603 784 aa16.1■□□□□ 0.17
SKA1-202ENST00000398452 MBD3O95983 291 aa16.1■□□□□ 0.17
SKA1-202ENST00000398452 MARCKSP29966 332 aaPredicted RBP16.1■□□□□ 0.17
SKA1-202ENST00000398452 PTGDRQ13258 359 aa16.1■□□□□ 0.17
SKA1-202ENST00000398452 CALCRLQ16602 461 aa16.1■□□□□ 0.17
SKA1-202ENST00000398452 Q3C1V9 767 aa16.1■□□□□ 0.17
SKA1-202ENST00000398452 XRRA1Q6P2D8 792 aa16.1■□□□□ 0.17
SKA1-202ENST00000398452 KRI1Q8N9T8 703 aaKnown RBP16.1■□□□□ 0.17
SKA1-202ENST00000398452 DNERQ8NFT8 737 aa16.1■□□□□ 0.17
SKA1-202ENST00000398452 FERMT2Q96AC1 680 aa16.1■□□□□ 0.17
SKA1-202ENST00000398452 RAB34Q9BZG1 259 aa16.1■□□□□ 0.17
SKA1-202ENST00000398452 TRIM17Q9Y577 477 aa16.1■□□□□ 0.17
SKA1-202ENST00000398452 A0A0G2JMZ2 1700 aa16.09■□□□□ 0.17
SKA1-202ENST00000398452 PEX10O60683 326 aa16.09■□□□□ 0.17
SKA1-202ENST00000398452 CUTAO60888 179 aa16.09■□□□□ 0.17
SKA1-202ENST00000398452 CYP3A4P08684 503 aa16.09■□□□□ 0.17
SKA1-202ENST00000398452 OR52Z1P0C646 297 aa16.09■□□□□ 0.17
SKA1-202ENST00000398452 PYGBP11216 843 aa16.09■□□□□ 0.17
SKA1-202ENST00000398452 MYCLP12524 364 aaPredicted RBP16.09■□□□□ 0.17
SKA1-202ENST00000398452 EIF2AK2P19525 551 aaKnown RBP16.09■□□□□ 0.17
SKA1-202ENST00000398452 CCND2P30279 289 aa16.09■□□□□ 0.17
SKA1-202ENST00000398452 ATP2C1P98194 919 aaPredicted RBP16.09■□□□□ 0.17
SKA1-202ENST00000398452 SETQ01105 290 aaPredicted RBP16.09■□□□□ 0.17
SKA1-202ENST00000398452 CRHR2Q13324 411 aa16.09■□□□□ 0.17
SKA1-202ENST00000398452 PKN2Q16513 984 aaKnown RBP16.09■□□□□ 0.17
SKA1-202ENST00000398452 ARL6IP4Q66PJ3 421 aaKnown RBP16.09■□□□□ 0.17
SKA1-202ENST00000398452 DTHD1Q6ZMT9 781 aa16.09■□□□□ 0.17
SKA1-202ENST00000398452 TAAR1Q96RJ0 339 aa16.09■□□□□ 0.17
SKA1-202ENST00000398452 TMEM106CQ9BVX2 250 aa16.09■□□□□ 0.17
SKA1-202ENST00000398452 EFCC1Q9HA90 598 aa16.09■□□□□ 0.17
SKA1-202ENST00000398452 COLQQ9Y215 455 aaPredicted RBP16.09■□□□□ 0.17
SKA1-202ENST00000398452 DDX49Q9Y6V7 483 aaKnown RBP16.09■□□□□ 0.17
SKA1-202ENST00000398452 COL11A1P12107 1806 aaPredicted RBP16.09■□□□□ 0.17
SKA1-202ENST00000398452 TDP2O95551 362 aa16.08■□□□□ 0.16
SKA1-202ENST00000398452 TXLNAP40222 546 aa16.08■□□□□ 0.16
SKA1-202ENST00000398452 UBXN2AP68543 259 aa16.08■□□□□ 0.16
SKA1-202ENST00000398452 GSE1Q14687 1217 aa16.08■□□□□ 0.16
SKA1-202ENST00000398452 PTPAQ15257 358 aa16.08■□□□□ 0.16
SKA1-202ENST00000398452 PRR16Q569H4 304 aa16.08■□□□□ 0.16
SKA1-202ENST00000398452 ADALQ6DHV7 355 aa16.08■□□□□ 0.16
SKA1-202ENST00000398452 FBXO46Q6PJ61 603 aaPredicted RBP16.08■□□□□ 0.16
SKA1-202ENST00000398452 CCDC73Q6ZRK6 1079 aa16.08■□□□□ 0.16
SKA1-202ENST00000398452 PLEKHH3Q7Z736 793 aa16.08■□□□□ 0.16
SKA1-202ENST00000398452 NLRX1Q86UT6 975 aa16.08■□□□□ 0.16
SKA1-202ENST00000398452 SLFN12Q8IYM2 578 aa16.08■□□□□ 0.16
SKA1-202ENST00000398452 IWS1Q96ST2 819 aa16.08■□□□□ 0.16
SKA1-202ENST00000398452 PXMP2Q9NR77 195 aa16.08■□□□□ 0.16
SKA1-202ENST00000398452 LMBRD1Q9NUN5 540 aa16.08■□□□□ 0.16
SKA1-202ENST00000398452 FAM13BQ9NYF5 915 aa16.08■□□□□ 0.16
SKA1-202ENST00000398452 TCEAL9Q9UHQ7 104 aa16.08■□□□□ 0.16
SKA1-202ENST00000398452 MORC2Q9Y6X9 1032 aaPredicted RBP16.08■□□□□ 0.16
SKA1-202ENST00000398452 STAM2O75886 525 aa16.07■□□□□ 0.16
SKA1-202ENST00000398452 ECM2O94769 699 aaPredicted RBP16.07■□□□□ 0.16
SKA1-202ENST00000398452 CIITAP33076 1130 aa16.07■□□□□ 0.16
SKA1-202ENST00000398452 PRPHP41219 470 aa16.07■□□□□ 0.16
SKA1-202ENST00000398452 PDE4DQ08499 809 aa16.07■□□□□ 0.16
SKA1-202ENST00000398452 KIF22Q14807 665 aa16.07■□□□□ 0.16
SKA1-202ENST00000398452 PGM5Q15124 567 aa16.07■□□□□ 0.16
SKA1-202ENST00000398452 GNPTABQ3T906 1256 aa16.07■□□□□ 0.16
SKA1-202ENST00000398452 CEP55Q53EZ4 464 aa16.07■□□□□ 0.16
SKA1-202ENST00000398452 PCNX4Q63HM2 1172 aa16.07■□□□□ 0.16
SKA1-202ENST00000398452 POTEEQ6S8J3 1075 aa16.07■□□□□ 0.16
SKA1-202ENST00000398452 DHX30Q7L2E3 1194 aaKnown RBP eCLIP16.07■□□□□ 0.16
SKA1-202ENST00000398452 DPP9Q86TI2 863 aa16.07■□□□□ 0.16
SKA1-202ENST00000398452 PLA2G4DQ86XP0 818 aa16.07■□□□□ 0.16
SKA1-202ENST00000398452 ABRAQ8N0Z2 381 aa16.07■□□□□ 0.16
SKA1-202ENST00000398452 CD99L2Q8TCZ2 262 aa16.07■□□□□ 0.16
SKA1-202ENST00000398452 PORCNQ9H237 461 aa16.07■□□□□ 0.16
SKA1-202ENST00000398452 COL20A1Q9P218 1284 aa16.07■□□□□ 0.16
SKA1-202ENST00000398452 PCDHA7Q9UN72 937 aa16.07■□□□□ 0.16
SKA1-202ENST00000398452 SRPRBQ9Y5M8 271 aaKnown RBP16.07■□□□□ 0.16
SKA1-202ENST00000398452 PDE4DIPQ5VU43 2346 aa16.07■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms