RNA–Protein interactions for RNA: ENST00000374876.4

CCDC40-202, Transcript of coiled-coil domain containing 40, humanhuman

TSL 1 (best) BASIC

Gene CCDC40, Length 2,010 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-202ENST00000374876 KIF18AQ8NI77 898 aa17.5■□□□□ 0.39
CCDC40-202ENST00000374876 PPP1R13BQ96KQ4 1090 aa17.5■□□□□ 0.39
CCDC40-202ENST00000374876 GSDMAQ96QA5 445 aa17.5■□□□□ 0.39
CCDC40-202ENST00000374876 PNMA3Q9UL41 463 aa17.5■□□□□ 0.39
CCDC40-202ENST00000374876 GPR25O00155 361 aa17.5■□□□□ 0.39
CCDC40-202ENST00000374876 WDR46O15213 610 aaKnown RBP17.5■□□□□ 0.39
CCDC40-202ENST00000374876 DPYDQ12882 1025 aa17.5■□□□□ 0.39
CCDC40-202ENST00000374876 GMCL1P1Q8NEA9 526 aa17.5■□□□□ 0.39
CCDC40-202ENST00000374876 CCDC148Q8NFR7 591 aa17.5■□□□□ 0.39
CCDC40-202ENST00000374876 FBXO28Q9NVF7 368 aa17.5■□□□□ 0.39
CCDC40-202ENST00000374876 INTS13Q9NVM9 706 aa17.5■□□□□ 0.39
CCDC40-202ENST00000374876 ADAMTS3O15072 1205 aa17.49■□□□□ 0.39
CCDC40-202ENST00000374876 CCP110O43303 1012 aa17.49■□□□□ 0.39
CCDC40-202ENST00000374876 FLOT1O75955 427 aa17.49■□□□□ 0.39
CCDC40-202ENST00000374876 ARL6IP4Q66PJ3 421 aaKnown RBP17.49■□□□□ 0.39
CCDC40-202ENST00000374876 POTEEQ6S8J3 1075 aa17.49■□□□□ 0.39
CCDC40-202ENST00000374876 ZNF296Q8WUU4 475 aaPredicted RBP17.49■□□□□ 0.39
CCDC40-202ENST00000374876 CCDC194A0A1B0GVG4 234 aa17.48■□□□□ 0.39
CCDC40-202ENST00000374876 CASP1P29466 404 aa17.48■□□□□ 0.39
CCDC40-202ENST00000374876 HERVK_113P62684 666 aa17.48■□□□□ 0.39
CCDC40-202ENST00000374876 COG2Q14746 738 aa17.48■□□□□ 0.39
CCDC40-202ENST00000374876 PTPN21Q16825 1174 aa17.48■□□□□ 0.39
CCDC40-202ENST00000374876 C17orf99Q6UX52 265 aa17.48■□□□□ 0.39
CCDC40-202ENST00000374876 KCTD1Q719H9 257 aa17.48■□□□□ 0.39
CCDC40-202ENST00000374876 HEATR3Q7Z4Q2 680 aa17.48■□□□□ 0.39
CCDC40-202ENST00000374876 ANKRD13CQ8N6S4 541 aa17.48■□□□□ 0.39
CCDC40-202ENST00000374876 MED15Q96RN5 788 aa17.48■□□□□ 0.39
CCDC40-202ENST00000374876 LZTS2Q9BRK4 669 aa17.48■□□□□ 0.39
CCDC40-202ENST00000374876 SAMSN1Q9NSI8 373 aaKnown RBP17.48■□□□□ 0.39
CCDC40-202ENST00000374876 ADGRA2Q96PE1 1338 aa17.48■□□□□ 0.39
CCDC40-202ENST00000374876 SYNRGQ9UMZ2 1314 aa17.48■□□□□ 0.39
CCDC40-202ENST00000374876 LONP1P36776 959 aaKnown RBP17.48■□□□□ 0.39
CCDC40-202ENST00000374876 TXLNAP40222 546 aa17.48■□□□□ 0.39
CCDC40-202ENST00000374876 SLC1A4P43007 532 aa17.48■□□□□ 0.39
CCDC40-202ENST00000374876 GLIPR1L2Q4G1C9 344 aa17.48■□□□□ 0.39
CCDC40-202ENST00000374876 SPECC1LQ69YQ0 1117 aa17.48■□□□□ 0.39
CCDC40-202ENST00000374876 KLHL10Q6JEL2 608 aa17.48■□□□□ 0.39
CCDC40-202ENST00000374876 SYNPO2Q9UMS6 1093 aa17.48■□□□□ 0.39
CCDC40-202ENST00000374876 CASP8AP2Q9UKL3 1982 aa17.47■□□□□ 0.39
CCDC40-202ENST00000374876 BMP3P12645 472 aa17.47■□□□□ 0.39
CCDC40-202ENST00000374876 SYCP1Q15431 976 aa17.47■□□□□ 0.39
CCDC40-202ENST00000374876 E2F4Q16254 413 aa17.47■□□□□ 0.39
CCDC40-202ENST00000374876 IL17AQ16552 155 aa17.47■□□□□ 0.39
CCDC40-202ENST00000374876 SPATA1Q5VX52 437 aa17.47■□□□□ 0.39
CCDC40-202ENST00000374876 WWC2Q6AWC2 1192 aa17.47■□□□□ 0.39
CCDC40-202ENST00000374876 GALNT17Q6IS24 598 aa17.47■□□□□ 0.39
CCDC40-202ENST00000374876 RASGRP4Q8TDF6 673 aa17.47■□□□□ 0.39
CCDC40-202ENST00000374876 TMX1Q9H3N1 280 aa17.47■□□□□ 0.39
CCDC40-202ENST00000374876 TXNRD2Q9NNW7 524 aa17.47■□□□□ 0.39
CCDC40-202ENST00000374876 PALM3A6NDB9 673 aaPredicted RBP17.47■□□□□ 0.39
CCDC40-202ENST00000374876 SPDYE16A6NNV3 312 aaPredicted RBP17.47■□□□□ 0.39
CCDC40-202ENST00000374876 TYW1BQ6NUM6 668 aa17.47■□□□□ 0.39
CCDC40-202ENST00000374876 ANKRD7Q92527 254 aa17.47■□□□□ 0.39
CCDC40-202ENST00000374876 STAMQ92783 540 aa17.47■□□□□ 0.39
CCDC40-202ENST00000374876 PAGR1Q9BTK6 254 aa17.47■□□□□ 0.39
CCDC40-202ENST00000374876 BARHL2Q9NY43 387 aa17.47■□□□□ 0.39
CCDC40-202ENST00000374876 HOXC10Q9NYD6 342 aa17.47■□□□□ 0.39
CCDC40-202ENST00000374876 RBPJLQ9UBG7 517 aa17.47■□□□□ 0.39
CCDC40-202ENST00000374876 FRMPD2Q68DX3 1309 aaPredicted RBP17.46■□□□□ 0.39
CCDC40-202ENST00000374876 KLRF2D3W0D1 207 aa17.46■□□□□ 0.39
CCDC40-202ENST00000374876 CYTH3O43739 400 aa17.46■□□□□ 0.39
CCDC40-202ENST00000374876 TUBB4AP04350 444 aa17.46■□□□□ 0.39
CCDC40-202ENST00000374876 BCRP11274 1271 aa17.46■□□□□ 0.39
CCDC40-202ENST00000374876 CD44P16070 742 aaKnown RBP17.46■□□□□ 0.39
CCDC40-202ENST00000374876 DSG3P32926 999 aa17.46■□□□□ 0.39
CCDC40-202ENST00000374876 SP3Q02447 781 aa17.46■□□□□ 0.39
CCDC40-202ENST00000374876 TBX2Q13207 712 aaPredicted RBP17.46■□□□□ 0.39
CCDC40-202ENST00000374876 CUL4BQ13620 913 aa17.46■□□□□ 0.39
CCDC40-202ENST00000374876 Q3C1V9 767 aa17.46■□□□□ 0.39
CCDC40-202ENST00000374876 DAGLBQ8NCG7 672 aa17.46■□□□□ 0.39
CCDC40-202ENST00000374876 GMCL1Q96IK5 515 aa17.46■□□□□ 0.39
CCDC40-202ENST00000374876 PCDHA6Q9UN73 950 aa17.46■□□□□ 0.39
CCDC40-202ENST00000374876 PCDHA8Q9Y5H6 950 aa17.46■□□□□ 0.39
CCDC40-202ENST00000374876 M0R2N6 131 aa17.45■□□□□ 0.38
CCDC40-202ENST00000374876 STXBP3O00186 592 aa17.45■□□□□ 0.38
CCDC40-202ENST00000374876 FKTNO75072 461 aa17.45■□□□□ 0.38
CCDC40-202ENST00000374876 GOLGA8HP0CJ92 632 aa17.45■□□□□ 0.38
CCDC40-202ENST00000374876 PDHBP11177 359 aa17.45■□□□□ 0.38
CCDC40-202ENST00000374876 STX17P56962 302 aa17.45■□□□□ 0.38
CCDC40-202ENST00000374876 CAP1Q01518 475 aa17.45■□□□□ 0.38
CCDC40-202ENST00000374876 GOLGA8FQ08AF8 430 aa17.45■□□□□ 0.38
CCDC40-202ENST00000374876 NCBP1Q09161 790 aaKnown RBP17.45■□□□□ 0.38
CCDC40-202ENST00000374876 GOLGA8DPQ0D2H9 430 aa17.45■□□□□ 0.38
CCDC40-202ENST00000374876 CCDC96Q2M329 555 aa17.45■□□□□ 0.38
CCDC40-202ENST00000374876 SLC35G1Q2M3R5 365 aa17.45■□□□□ 0.38
CCDC40-202ENST00000374876 TTBK2Q6IQ55 1244 aa17.45■□□□□ 0.38
CCDC40-202ENST00000374876 PDXDC2PQ6P474 469 aa17.45■□□□□ 0.38
CCDC40-202ENST00000374876 SMYD4Q8IYR2 804 aaPredicted RBP17.45■□□□□ 0.38
CCDC40-202ENST00000374876 PDCL2Q8N4E4 241 aa17.45■□□□□ 0.38
CCDC40-202ENST00000374876 C4orf32Q8N8J7 132 aa17.45■□□□□ 0.38
CCDC40-202ENST00000374876 ATG4CQ96DT6 458 aa17.45■□□□□ 0.38
CCDC40-202ENST00000374876 BLZF1Q9H2G9 400 aa17.45■□□□□ 0.38
CCDC40-202ENST00000374876 GPCPD1Q9NPB8 672 aa17.45■□□□□ 0.38
CCDC40-202ENST00000374876 GTPBP6O43824 516 aaPredicted RBP17.45■□□□□ 0.38
CCDC40-202ENST00000374876 PARP1P09874 1014 aaKnown RBP17.45■□□□□ 0.38
CCDC40-202ENST00000374876 NR1I3Q14994 352 aa17.45■□□□□ 0.38
CCDC40-202ENST00000374876 DTHD1Q6ZMT9 781 aa17.45■□□□□ 0.38
CCDC40-202ENST00000374876 HOMER1Q86YM7 354 aa17.45■□□□□ 0.38
CCDC40-202ENST00000374876 FAM177A1Q8N128 213 aaPredicted RBP17.45■□□□□ 0.38
CCDC40-202ENST00000374876 KIFC2Q96AC6 838 aa17.45■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms