RNA–Protein interactions for RNA: ENST00000368440.4

SMPDL3A-201, Transcript of sphingomyelin phosphodiesterase acid like 3A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMPDL3A, Length 1,851 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPDL3A-201ENST00000368440 PCDHA6Q9UN73 950 aa17.3■□□□□ 0.36
SMPDL3A-201ENST00000368440 PCDHA8Q9Y5H6 950 aa17.3■□□□□ 0.36
SMPDL3A-201ENST00000368440 CTAGE5O15320 804 aa17.29■□□□□ 0.36
SMPDL3A-201ENST00000368440 JAK2O60674 1132 aa17.29■□□□□ 0.36
SMPDL3A-201ENST00000368440 EIF3JO75822 258 aaKnown RBP17.29■□□□□ 0.36
SMPDL3A-201ENST00000368440 FDPSP14324 419 aaKnown RBP17.29■□□□□ 0.36
SMPDL3A-201ENST00000368440 CAPN2P17655 700 aa17.29■□□□□ 0.36
SMPDL3A-201ENST00000368440 CCND2P30279 289 aa17.29■□□□□ 0.36
SMPDL3A-201ENST00000368440 COPS5Q92905 334 aa17.29■□□□□ 0.36
SMPDL3A-201ENST00000368440 UPF3AQ9H1J1 476 aaKnown RBP17.29■□□□□ 0.36
SMPDL3A-201ENST00000368440 DOCK5Q9H7D0 1870 aa17.29■□□□□ 0.36
SMPDL3A-201ENST00000368440 SPDYE3A6NKU9 549 aa17.29■□□□□ 0.36
SMPDL3A-201ENST00000368440 DNM1LO00429 736 aa17.29■□□□□ 0.36
SMPDL3A-201ENST00000368440 COL6A1P12109 1028 aa17.29■□□□□ 0.36
SMPDL3A-201ENST00000368440 DUSP28Q4G0W2 176 aa17.29■□□□□ 0.36
SMPDL3A-201ENST00000368440 TLK2Q86UE8 772 aa17.29■□□□□ 0.36
SMPDL3A-201ENST00000368440 ARRDC4Q8NCT1 418 aa17.29■□□□□ 0.36
SMPDL3A-201ENST00000368440 SCFD2Q8WU76 684 aa17.29■□□□□ 0.36
SMPDL3A-201ENST00000368440 CCDC12Q8WUD4 166 aaPredicted RBP17.29■□□□□ 0.36
SMPDL3A-201ENST00000368440 GJB4Q9NTQ9 266 aa17.29■□□□□ 0.36
SMPDL3A-201ENST00000368440 ORC3Q9UBD5 711 aaPredicted RBP17.29■□□□□ 0.36
SMPDL3A-201ENST00000368440 DNAH12Q6ZR08 3092 aa17.28■□□□□ 0.36
SMPDL3A-201ENST00000368440 ST18O60284 1047 aa17.28■□□□□ 0.36
SMPDL3A-201ENST00000368440 C6orf222P0C671 652 aaPredicted RBP17.28■□□□□ 0.36
SMPDL3A-201ENST00000368440 GJA9P57773 515 aa17.28■□□□□ 0.36
SMPDL3A-201ENST00000368440 MLLT1Q03111 559 aaPredicted RBP17.28■□□□□ 0.36
SMPDL3A-201ENST00000368440 LY6KQ17RY6 165 aa17.28■□□□□ 0.36
SMPDL3A-201ENST00000368440 JAKMIP3Q5VZ66 844 aa17.28■□□□□ 0.36
SMPDL3A-201ENST00000368440 CCDC62Q6P9F0 684 aa17.28■□□□□ 0.36
SMPDL3A-201ENST00000368440 NECAB2Q7Z6G3 386 aa17.28■□□□□ 0.36
SMPDL3A-201ENST00000368440 KLHDC9Q8NEP7 349 aa17.28■□□□□ 0.36
SMPDL3A-201ENST00000368440 CCDC148Q8NFR7 591 aa17.28■□□□□ 0.36
SMPDL3A-201ENST00000368440 RASGRP4Q8TDF6 673 aa17.28■□□□□ 0.36
SMPDL3A-201ENST00000368440 ANO3Q9BYT9 981 aa17.28■□□□□ 0.36
SMPDL3A-201ENST00000368440 C11orf49Q9H6J7 331 aa17.28■□□□□ 0.36
SMPDL3A-201ENST00000368440 C6orf50Q9HD87 102 aa17.28■□□□□ 0.36
SMPDL3A-201ENST00000368440 SH3GLB2Q9NR46 395 aa17.28■□□□□ 0.36
SMPDL3A-201ENST00000368440 MYH7BA7E2Y1 1941 aa17.28■□□□□ 0.36
SMPDL3A-201ENST00000368440 DYNC1LI2O43237 492 aaPredicted RBP17.27■□□□□ 0.36
SMPDL3A-201ENST00000368440 TXNP10599 105 aaKnown RBP17.27■□□□□ 0.36
SMPDL3A-201ENST00000368440 BEX3Q00994 111 aa17.27■□□□□ 0.36
SMPDL3A-201ENST00000368440 PCNX4Q63HM2 1172 aa17.27■□□□□ 0.36
SMPDL3A-201ENST00000368440 CCSAPQ6IQ19 270 aaPredicted RBP17.27■□□□□ 0.36
SMPDL3A-201ENST00000368440 ZSCAN31Q96LW9 406 aaPredicted RBP17.27■□□□□ 0.36
SMPDL3A-201ENST00000368440 RTEL1Q9NZ71 1219 aa17.27■□□□□ 0.36
SMPDL3A-201ENST00000368440 KBTBD13C9JR72 458 aa17.27■□□□□ 0.35
SMPDL3A-201ENST00000368440 TTLL4Q14679 1199 aa17.27■□□□□ 0.35
SMPDL3A-201ENST00000368440 NPY5RQ15761 445 aa17.27■□□□□ 0.35
SMPDL3A-201ENST00000368440 RNF180Q86T96 592 aa17.27■□□□□ 0.35
SMPDL3A-201ENST00000368440 GLT8D2Q9H1C3 349 aa17.27■□□□□ 0.35
SMPDL3A-201ENST00000368440 KCNJ14Q9UNX9 436 aa17.27■□□□□ 0.35
SMPDL3A-201ENST00000368440 NLRP5P59047 1200 aa17.26■□□□□ 0.35
SMPDL3A-201ENST00000368440 AP3B2Q13367 1082 aa17.26■□□□□ 0.35
SMPDL3A-201ENST00000368440 REXO1Q8N1G1 1221 aaKnown RBP17.26■□□□□ 0.35
SMPDL3A-201ENST00000368440 FERMT2Q96AC1 680 aa17.26■□□□□ 0.35
SMPDL3A-201ENST00000368440 INPP4AQ96PE3 977 aaPredicted RBP17.26■□□□□ 0.35
SMPDL3A-201ENST00000368440 SH2B1Q9NRF2 756 aaPredicted RBP17.26■□□□□ 0.35
SMPDL3A-201ENST00000368440 DDX41Q9UJV9 622 aaKnown RBP17.26■□□□□ 0.35
SMPDL3A-201ENST00000368440 MRVI1Q9Y6F6 885 aa17.26■□□□□ 0.35
SMPDL3A-201ENST00000368440 CST5P28325 142 aaPredicted RBP17.25■□□□□ 0.35
SMPDL3A-201ENST00000368440 GNA11P29992 359 aa17.25■□□□□ 0.35
SMPDL3A-201ENST00000368440 NKX3-2P78367 333 aa17.25■□□□□ 0.35
SMPDL3A-201ENST00000368440 SP2Q02086 613 aa17.25■□□□□ 0.35
SMPDL3A-201ENST00000368440 SEMA3FQ13275 785 aa17.25■□□□□ 0.35
SMPDL3A-201ENST00000368440 KCNA10Q16322 511 aa17.25■□□□□ 0.35
SMPDL3A-201ENST00000368440 TEX2Q8IWB9 1127 aa17.25■□□□□ 0.35
SMPDL3A-201ENST00000368440 OR6J1Q8NGC5 347 aa17.25■□□□□ 0.35
SMPDL3A-201ENST00000368440 ALG1Q9BT22 464 aa17.25■□□□□ 0.35
SMPDL3A-201ENST00000368440 SENP6Q9GZR1 1112 aaPredicted RBP17.25■□□□□ 0.35
SMPDL3A-201ENST00000368440 AP5M1Q9H0R1 490 aa17.25■□□□□ 0.35
SMPDL3A-201ENST00000368440 SORBS3O60504 671 aa17.24■□□□□ 0.35
SMPDL3A-201ENST00000368440 FOSP01100 380 aaPredicted RBP17.24■□□□□ 0.35
SMPDL3A-201ENST00000368440 FOSBP53539 338 aa17.24■□□□□ 0.35
SMPDL3A-201ENST00000368440 SPC25Q9HBM1 224 aa17.24■□□□□ 0.35
SMPDL3A-201ENST00000368440 PHF24Q9UPV7 400 aa17.24■□□□□ 0.35
SMPDL3A-201ENST00000368440 Q9Y3F1 56 aa17.24■□□□□ 0.35
SMPDL3A-201ENST00000368440 NKRFO15226 690 aaKnown RBP eCLIP17.24■□□□□ 0.35
SMPDL3A-201ENST00000368440 ITGB5P18084 799 aa17.24■□□□□ 0.35
SMPDL3A-201ENST00000368440 SREBF1P36956 1147 aa17.24■□□□□ 0.35
SMPDL3A-201ENST00000368440 ARHGAP1Q07960 439 aa17.24■□□□□ 0.35
SMPDL3A-201ENST00000368440 FSCN1Q16658 493 aaKnown RBP17.24■□□□□ 0.35
SMPDL3A-201ENST00000368440 GNASQ5JWF2 1037 aa17.24■□□□□ 0.35
SMPDL3A-201ENST00000368440 TMX3Q96JJ7 454 aa17.24■□□□□ 0.35
SMPDL3A-201ENST00000368440 PHF20Q9BVI0 1012 aa17.24■□□□□ 0.35
SMPDL3A-201ENST00000368440 BCAS3Q9H6U6 928 aa17.24■□□□□ 0.35
SMPDL3A-201ENST00000368440 EHMT1Q9H9B1 1298 aa17.24■□□□□ 0.35
SMPDL3A-201ENST00000368440 PCDHA4Q9UN74 947 aa17.24■□□□□ 0.35
SMPDL3A-201ENST00000368440 A0A1W2PQ45 241 aaPredicted RBP17.23■□□□□ 0.35
SMPDL3A-201ENST00000368440 A0A1W2PQY0 241 aa17.23■□□□□ 0.35
SMPDL3A-201ENST00000368440 M0R2N6 131 aa17.23■□□□□ 0.35
SMPDL3A-201ENST00000368440 STAM2O75886 525 aa17.23■□□□□ 0.35
SMPDL3A-201ENST00000368440 ASGR1P07306 291 aa17.23■□□□□ 0.35
SMPDL3A-201ENST00000368440 UBA1P22314 1058 aaKnown RBP17.23■□□□□ 0.35
SMPDL3A-201ENST00000368440 ACLYP53396 1101 aa17.23■□□□□ 0.35
SMPDL3A-201ENST00000368440 XRRA1Q6P2D8 792 aa17.23■□□□□ 0.35
SMPDL3A-201ENST00000368440 BICD2Q8TD16 824 aa17.23■□□□□ 0.35
SMPDL3A-201ENST00000368440 CRYGNQ8WXF5 182 aa17.23■□□□□ 0.35
SMPDL3A-201ENST00000368440 UBIAD1Q9Y5Z9 338 aa17.23■□□□□ 0.35
SMPDL3A-201ENST00000368440 ATN1P54259 1190 aaPredicted RBP17.22■□□□□ 0.35
SMPDL3A-201ENST00000368440 ARHGAP4P98171 946 aa17.22■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms