RNA–Protein interactions for RNA: ENST00000367253.8

SYNE1-206, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 5,189 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-206ENST00000367253 MTRQ99707 1265 aa9.4□□□□□ -0.91
SYNE1-206ENST00000367253 DDX50Q9BQ39 737 aaKnown RBP9.4□□□□□ -0.91
SYNE1-206ENST00000367253 AATFQ9NY61 560 aaKnown RBP eCLIP9.4□□□□□ -0.91
SYNE1-206ENST00000367253 RTL1A6NKG5 1358 aa9.4□□□□□ -0.91
SYNE1-206ENST00000367253 ERBB3P21860 1342 aa9.4□□□□□ -0.91
SYNE1-206ENST00000367253 LSM1O15116 133 aaKnown RBP9.39□□□□□ -0.91
SYNE1-206ENST00000367253 LRPAP1P30533 357 aa9.39□□□□□ -0.91
SYNE1-206ENST00000367253 TTLL4Q14679 1199 aa9.39□□□□□ -0.91
SYNE1-206ENST00000367253 SLC15A2Q16348 729 aa9.39□□□□□ -0.91
SYNE1-206ENST00000367253 INAQ16352 499 aa9.39□□□□□ -0.91
SYNE1-206ENST00000367253 MUM1Q2TAK8 710 aa9.39□□□□□ -0.91
SYNE1-206ENST00000367253 MIS18BP1Q6P0N0 1132 aa9.39□□□□□ -0.91
SYNE1-206ENST00000367253 CROCCP2Q86T23 111 aa9.39□□□□□ -0.91
SYNE1-206ENST00000367253 AFAP1L2Q8N4X5 818 aa9.39□□□□□ -0.91
SYNE1-206ENST00000367253 FAM167AQ96KS9 214 aa9.39□□□□□ -0.91
SYNE1-206ENST00000367253 CAPZA3Q96KX2 299 aa9.39□□□□□ -0.91
SYNE1-206ENST00000367253 SLC52A2Q9HAB3 445 aa9.39□□□□□ -0.91
SYNE1-206ENST00000367253 DSEQ9UL01 958 aa9.39□□□□□ -0.91
SYNE1-206ENST00000367253 SH3BP1Q9Y3L3 701 aa9.39□□□□□ -0.91
SYNE1-206ENST00000367253 HOXB7P09629 217 aa9.39□□□□□ -0.91
SYNE1-206ENST00000367253 DYNC1I2Q13409 638 aaKnown RBP9.39□□□□□ -0.91
SYNE1-206ENST00000367253 TUBB2AQ13885 445 aa9.39□□□□□ -0.91
SYNE1-206ENST00000367253 USP17L2Q6R6M4 530 aa9.39□□□□□ -0.91
SYNE1-206ENST00000367253 PGBD4Q96DM1 585 aa9.39□□□□□ -0.91
SYNE1-206ENST00000367253 OMA1Q96E52 524 aa9.39□□□□□ -0.91
SYNE1-206ENST00000367253 WRNIP1Q96S55 665 aa9.39□□□□□ -0.91
SYNE1-206ENST00000367253 TUBB2BQ9BVA1 445 aa9.39□□□□□ -0.91
SYNE1-206ENST00000367253 ANLNQ9NQW6 1124 aa9.39□□□□□ -0.91
SYNE1-206ENST00000367253 ARPP21Q9UBL0 812 aaPredicted RBP9.39□□□□□ -0.91
SYNE1-206ENST00000367253 EVLQ9UI08 416 aaPredicted RBP9.39□□□□□ -0.91
SYNE1-206ENST00000367253 JAG2Q9Y219 1238 aa9.39□□□□□ -0.91
SYNE1-206ENST00000367253 CCDC159P0C7I6 412 aa9.39□□□□□ -0.91
SYNE1-206ENST00000367253 CUL3Q13618 768 aa9.39□□□□□ -0.91
SYNE1-206ENST00000367253 CLUL1Q15846 466 aa9.39□□□□□ -0.91
SYNE1-206ENST00000367253 UBLCP1Q8WVY7 318 aaPredicted RBP9.39□□□□□ -0.91
SYNE1-206ENST00000367253 SLC7A3Q8WY07 619 aa9.39□□□□□ -0.91
SYNE1-206ENST00000367253 OTUD5Q96G74 571 aa9.39□□□□□ -0.91
SYNE1-206ENST00000367253 APOL6Q9BWW8 343 aa9.39□□□□□ -0.91
SYNE1-206ENST00000367253 FBXL5Q9UKA1 691 aa9.39□□□□□ -0.91
SYNE1-206ENST00000367253 SETD1BQ9UPS6 1966 aaKnown RBP9.39□□□□□ -0.91
SYNE1-206ENST00000367253 PRR29P0C7W0 189 aa9.39□□□□□ -0.91
SYNE1-206ENST00000367253 CRKLP46109 303 aaKnown RBP9.39□□□□□ -0.91
SYNE1-206ENST00000367253 RASSF2P50749 326 aa9.39□□□□□ -0.91
SYNE1-206ENST00000367253 GSTA5Q7RTV2 222 aa9.39□□□□□ -0.91
SYNE1-206ENST00000367253 ILDR1Q86SU0 546 aaPredicted RBP9.39□□□□□ -0.91
SYNE1-206ENST00000367253 TADA2BQ86TJ2 420 aa9.39□□□□□ -0.91
SYNE1-206ENST00000367253 OXCT2Q9BYC2 517 aaPredicted RBP9.39□□□□□ -0.91
SYNE1-206ENST00000367253 MMRN2Q9H8L6 949 aa9.39□□□□□ -0.91
SYNE1-206ENST00000367253 IFT122Q9HBG6 1241 aa9.39□□□□□ -0.91
SYNE1-206ENST00000367253 SCINQ9Y6U3 715 aa9.39□□□□□ -0.91
SYNE1-206ENST00000367253 CCL15-CCL14A0A0B4J2E2 113 aa9.38□□□□□ -0.91
SYNE1-206ENST00000367253 USP17L5A8MUK1 530 aa9.38□□□□□ -0.91
SYNE1-206ENST00000367253 KRT38O76015 456 aa9.38□□□□□ -0.91
SYNE1-206ENST00000367253 MSL3P1P0C860 447 aa9.38□□□□□ -0.91
SYNE1-206ENST00000367253 GUCY2CP25092 1073 aa9.38□□□□□ -0.91
SYNE1-206ENST00000367253 CCND2P30279 289 aa9.38□□□□□ -0.91
SYNE1-206ENST00000367253 SLFN5Q08AF3 891 aa9.38□□□□□ -0.91
SYNE1-206ENST00000367253 C16orf72Q14CZ0 275 aa9.38□□□□□ -0.91
SYNE1-206ENST00000367253 PPP2R5BQ15173 497 aa9.38□□□□□ -0.91
SYNE1-206ENST00000367253 CCL15Q16663 113 aa9.38□□□□□ -0.91
SYNE1-206ENST00000367253 SLC30A9Q6PML9 568 aa9.38□□□□□ -0.91
SYNE1-206ENST00000367253 C4orf50Q6ZRC1 276 aa9.38□□□□□ -0.91
SYNE1-206ENST00000367253 STAG1Q8WVM7 1258 aa9.38□□□□□ -0.91
SYNE1-206ENST00000367253 EMC3Q9P0I2 261 aa9.38□□□□□ -0.91
SYNE1-206ENST00000367253 BCAP29Q9UHQ4 241 aa9.38□□□□□ -0.91
SYNE1-206ENST00000367253 CD19P15391 556 aa9.38□□□□□ -0.91
SYNE1-206ENST00000367253 KCNV1Q6PIU1 500 aa9.38□□□□□ -0.91
SYNE1-206ENST00000367253 TLK2Q86UE8 772 aa9.38□□□□□ -0.91
SYNE1-206ENST00000367253 MYRIPQ8NFW9 859 aa9.38□□□□□ -0.91
SYNE1-206ENST00000367253 RNF139Q8WU17 664 aa9.38□□□□□ -0.91
SYNE1-206ENST00000367253 VMP1Q96GC9 406 aa9.38□□□□□ -0.91
SYNE1-206ENST00000367253 CCDC42Q96M95 316 aa9.38□□□□□ -0.91
SYNE1-206ENST00000367253 TTC25Q96NG3 672 aa9.38□□□□□ -0.91
SYNE1-206ENST00000367253 CCDC68Q9H2F9 335 aa9.38□□□□□ -0.91
SYNE1-206ENST00000367253 MRPL40Q9NQ50 206 aaKnown RBP9.38□□□□□ -0.91
SYNE1-206ENST00000367253 ATP8A2Q9NTI2 1148 aa9.38□□□□□ -0.91
SYNE1-206ENST00000367253 GAS7O60861 476 aa9.38□□□□□ -0.91
SYNE1-206ENST00000367253 PTGS1P23219 599 aa9.38□□□□□ -0.91
SYNE1-206ENST00000367253 GJB2P29033 226 aa9.38□□□□□ -0.91
SYNE1-206ENST00000367253 TUFMP49411 452 aaKnown RBP9.38□□□□□ -0.91
SYNE1-206ENST00000367253 ADCY7P51828 1080 aa9.38□□□□□ -0.91
SYNE1-206ENST00000367253 TTC23LQ6PF05 361 aa9.38□□□□□ -0.91
SYNE1-206ENST00000367253 SUGP1Q8IWZ8 645 aaKnown RBP9.38□□□□□ -0.91
SYNE1-206ENST00000367253 FNBP4Q8N3X1 1017 aaPredicted RBP9.38□□□□□ -0.91
SYNE1-206ENST00000367253 PLIN2Q99541 437 aa9.38□□□□□ -0.91
SYNE1-206ENST00000367253 MRPL46Q9H2W6 279 aaKnown RBP9.38□□□□□ -0.91
SYNE1-206ENST00000367253 DISC1Q9NRI5 854 aa9.38□□□□□ -0.91
SYNE1-206ENST00000367253 ANGPTL3Q9Y5C1 460 aa9.38□□□□□ -0.91
SYNE1-206ENST00000367253 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP9.38□□□□□ -0.91
SYNE1-206ENST00000367253 AATKQ6ZMQ8 1374 aa9.38□□□□□ -0.91
SYNE1-206ENST00000367253 KDM1AO60341 852 aa9.38□□□□□ -0.91
SYNE1-206ENST00000367253 PPFIA4O75335 1185 aa9.38□□□□□ -0.91
SYNE1-206ENST00000367253 STAT6P42226 847 aa9.38□□□□□ -0.91
SYNE1-206ENST00000367253 PLCB3Q01970 1234 aa9.38□□□□□ -0.91
SYNE1-206ENST00000367253 PPFIA1Q13136 1202 aa9.38□□□□□ -0.91
SYNE1-206ENST00000367253 MAP3K21Q5TCX8 1036 aa9.38□□□□□ -0.91
SYNE1-206ENST00000367253 ARMCX2Q7L311 632 aa9.38□□□□□ -0.91
SYNE1-206ENST00000367253 RAB42Q8N4Z0 105 aa9.38□□□□□ -0.91
SYNE1-206ENST00000367253 NSUN7Q8NE18 718 aaKnown RBP9.38□□□□□ -0.91
SYNE1-206ENST00000367253 TSR2Q969E8 191 aaKnown RBP9.38□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms