RNA–Protein interactions for RNA: ENST00000341307.6

RTN3-203, Transcript of reticulon 3, humanhuman

TSL 2 BASIC

Gene RTN3, Length 2,524 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-203ENST00000341307 PHKBQ93100 1093 aa13.1□□□□□ -0.31
RTN3-203ENST00000341307 CNKSR1Q969H4 720 aa13.1□□□□□ -0.31
RTN3-203ENST00000341307 ANKRD2Q9GZV1 360 aa13.1□□□□□ -0.31
RTN3-203ENST00000341307 LY9Q9HBG7 655 aa13.1□□□□□ -0.31
RTN3-203ENST00000341307 TTF2Q9UNY4 1162 aaKnown RBP13.1□□□□□ -0.31
RTN3-203ENST00000341307 IFIT3O14879 490 aaKnown RBP13.09□□□□□ -0.31
RTN3-203ENST00000341307 SRGAP2O75044 1071 aa13.09□□□□□ -0.31
RTN3-203ENST00000341307 GNAT2P19087 354 aa13.09□□□□□ -0.31
RTN3-203ENST00000341307 HMGB2P26583 209 aaKnown RBP13.09□□□□□ -0.31
RTN3-203ENST00000341307 METAP2P50579 478 aaKnown RBP eCLIP13.09□□□□□ -0.31
RTN3-203ENST00000341307 PDE4BQ07343 736 aa13.09□□□□□ -0.31
RTN3-203ENST00000341307 PPARAQ07869 468 aa13.09□□□□□ -0.31
RTN3-203ENST00000341307 SLC4A8Q2Y0W8 1093 aa13.09□□□□□ -0.31
RTN3-203ENST00000341307 TRIM42Q8IWZ5 723 aa13.09□□□□□ -0.31
RTN3-203ENST00000341307 LINC00301Q8NCQ3 95 aa13.09□□□□□ -0.31
RTN3-203ENST00000341307 SYT17Q9BSW7 474 aa13.09□□□□□ -0.31
RTN3-203ENST00000341307 NAA15Q9BXJ9 866 aaKnown RBP13.09□□□□□ -0.31
RTN3-203ENST00000341307 AATFQ9NY61 560 aaKnown RBP eCLIP13.09□□□□□ -0.31
RTN3-203ENST00000341307 MYH8P13535 1937 aa13.09□□□□□ -0.31
RTN3-203ENST00000341307 E7EVH7 732 aa13.09□□□□□ -0.31
RTN3-203ENST00000341307 DIAPH2O60879 1101 aa13.09□□□□□ -0.31
RTN3-203ENST00000341307 SMIM24O75264 130 aa13.09□□□□□ -0.31
RTN3-203ENST00000341307 GRAPQ13588 217 aa13.09□□□□□ -0.31
RTN3-203ENST00000341307 LRRC23Q53EV4 343 aaPredicted RBP13.09□□□□□ -0.31
RTN3-203ENST00000341307 GRAPLQ8TC17 118 aaPredicted RBP13.09□□□□□ -0.31
RTN3-203ENST00000341307 NSUN4Q96CB9 384 aaKnown RBP13.09□□□□□ -0.31
RTN3-203ENST00000341307 ZMYM6O95789 1325 aa13.09□□□□□ -0.31
RTN3-203ENST00000341307 WDR19Q8NEZ3 1342 aa13.09□□□□□ -0.31
RTN3-203ENST00000341307 ENC1O14682 589 aa13.08□□□□□ -0.32
RTN3-203ENST00000341307 NPM3O75607 178 aaKnown RBP13.08□□□□□ -0.32
RTN3-203ENST00000341307 PRDM1O75626 825 aa13.08□□□□□ -0.32
RTN3-203ENST00000341307 ZNF18P17022 549 aa13.08□□□□□ -0.32
RTN3-203ENST00000341307 MDH1P40925 334 aaKnown RBP13.08□□□□□ -0.32
RTN3-203ENST00000341307 QPCTQ16769 361 aa13.08□□□□□ -0.32
RTN3-203ENST00000341307 NUGGCQ68CJ6 796 aa13.08□□□□□ -0.32
RTN3-203ENST00000341307 HIBCHQ6NVY1 386 aaPredicted RBP13.08□□□□□ -0.32
RTN3-203ENST00000341307 TSHZ1Q6ZSZ6 1077 aa13.08□□□□□ -0.32
RTN3-203ENST00000341307 TAX1BP1Q86VP1 789 aa13.08□□□□□ -0.32
RTN3-203ENST00000341307 ZIM3Q96PE6 472 aa13.08□□□□□ -0.32
RTN3-203ENST00000341307 TSPYL2Q9H2G4 693 aaPredicted RBP13.08□□□□□ -0.32
RTN3-203ENST00000341307 DNAAF2Q9NVR5 837 aaKnown RBP13.08□□□□□ -0.32
RTN3-203ENST00000341307 DPPA5A6NC42 116 aa13.08□□□□□ -0.32
RTN3-203ENST00000341307 SRRM3A6NNA2 597 aaPredicted RBP13.08□□□□□ -0.32
RTN3-203ENST00000341307 ATP2C2O75185 946 aa13.08□□□□□ -0.32
RTN3-203ENST00000341307 KRT14P02533 472 aa13.08□□□□□ -0.32
RTN3-203ENST00000341307 POLR3DP05423 398 aaPredicted RBP13.08□□□□□ -0.32
RTN3-203ENST00000341307 RBL2Q08999 1139 aa13.08□□□□□ -0.32
RTN3-203ENST00000341307 ALS2CLQ60I27 953 aa13.08□□□□□ -0.32
RTN3-203ENST00000341307 CCDC170Q8IYT3 715 aa13.08□□□□□ -0.32
RTN3-203ENST00000341307 CMTR1Q8N1G2 835 aaKnown RBP13.08□□□□□ -0.32
RTN3-203ENST00000341307 AGAP11Q8TF27 550 aa13.08□□□□□ -0.32
RTN3-203ENST00000341307 C8orf76Q96K31 380 aa13.08□□□□□ -0.32
RTN3-203ENST00000341307 LEMD3Q9Y2U8 911 aa13.08□□□□□ -0.32
RTN3-203ENST00000341307 CLIC4Q9Y696 253 aa13.08□□□□□ -0.32
RTN3-203ENST00000341307 CHD4Q14839 1912 aa13.08□□□□□ -0.32
RTN3-203ENST00000341307 IRS2Q9Y4H2 1338 aa13.08□□□□□ -0.32
RTN3-203ENST00000341307 PFKFB1P16118 471 aa13.07□□□□□ -0.32
RTN3-203ENST00000341307 RIPK1Q13546 671 aa13.07□□□□□ -0.32
RTN3-203ENST00000341307 NR1I3Q14994 352 aa13.07□□□□□ -0.32
RTN3-203ENST00000341307 KIAA0825Q8IV33 1275 aa13.07□□□□□ -0.32
RTN3-203ENST00000341307 RPGRQ92834 1020 aaKnown RBP13.07□□□□□ -0.32
RTN3-203ENST00000341307 TMEM87BQ96K49 555 aa13.07□□□□□ -0.32
RTN3-203ENST00000341307 CAPZA3Q96KX2 299 aa13.07□□□□□ -0.32
RTN3-203ENST00000341307 FAM167BQ9BTA0 163 aa13.07□□□□□ -0.32
RTN3-203ENST00000341307 TRIM4Q9C037 500 aa13.07□□□□□ -0.32
RTN3-203ENST00000341307 NOP53Q9NZM5 478 aaKnown RBP13.07□□□□□ -0.32
RTN3-203ENST00000341307 MROH7-TTC4A0A0A0MT08 1334 aa13.07□□□□□ -0.32
RTN3-203ENST00000341307 RBM47A0AV96 593 aaKnown RBP13.07□□□□□ -0.32
RTN3-203ENST00000341307 ZBTB43O43298 467 aa13.07□□□□□ -0.32
RTN3-203ENST00000341307 ATP1A1P05023 1023 aaKnown RBP13.07□□□□□ -0.32
RTN3-203ENST00000341307 NR1D1P20393 614 aa13.07□□□□□ -0.32
RTN3-203ENST00000341307 BMP6P22004 513 aa13.07□□□□□ -0.32
RTN3-203ENST00000341307 TMEM62Q0P6H9 643 aa13.07□□□□□ -0.32
RTN3-203ENST00000341307 CUL3Q13618 768 aa13.07□□□□□ -0.32
RTN3-203ENST00000341307 GRIK5Q16478 980 aa13.07□□□□□ -0.32
RTN3-203ENST00000341307 SDCCAG8Q86SQ7 713 aaPredicted RBP13.07□□□□□ -0.32
RTN3-203ENST00000341307 CCDC82Q8N4S0 544 aa13.07□□□□□ -0.32
RTN3-203ENST00000341307 CCT6BQ92526 530 aa13.07□□□□□ -0.32
RTN3-203ENST00000341307 HVCN1Q96D96 273 aa13.07□□□□□ -0.32
RTN3-203ENST00000341307 OSBPL1AQ9BXW6 950 aa13.07□□□□□ -0.32
RTN3-203ENST00000341307 FAM217BQ9NTX9 383 aaPredicted RBP13.07□□□□□ -0.32
RTN3-203ENST00000341307 BAZ2AQ9UIF9 1905 aaKnown RBP13.07□□□□□ -0.32
RTN3-203ENST00000341307 MYH13Q9UKX3 1938 aa13.06□□□□□ -0.32
RTN3-203ENST00000341307 EIF4E1BA6NMX2 242 aaKnown RBP13.06□□□□□ -0.32
RTN3-203ENST00000341307 GOLGA8AA7E2F4 631 aa13.06□□□□□ -0.32
RTN3-203ENST00000341307 KIF28PB7ZC32 967 aa13.06□□□□□ -0.32
RTN3-203ENST00000341307 PDE2AO00408 941 aaPredicted RBP13.06□□□□□ -0.32
RTN3-203ENST00000341307 PPIP5K2O43314 1243 aa13.06□□□□□ -0.32
RTN3-203ENST00000341307 ATP6V1G1O75348 118 aa13.06□□□□□ -0.32
RTN3-203ENST00000341307 GPSM2P81274 684 aa13.06□□□□□ -0.32
RTN3-203ENST00000341307 PNOCQ13519 176 aa13.06□□□□□ -0.32
RTN3-203ENST00000341307 MYBPC3Q14896 1274 aa13.06□□□□□ -0.32
RTN3-203ENST00000341307 EHBP1Q8NDI1 1231 aa13.06□□□□□ -0.32
RTN3-203ENST00000341307 CCHCR1Q8TD31 782 aa13.06□□□□□ -0.32
RTN3-203ENST00000341307 BICD1Q96G01 975 aa13.06□□□□□ -0.32
RTN3-203ENST00000341307 TSPAN18Q96SJ8 248 aa13.06□□□□□ -0.32
RTN3-203ENST00000341307 KRT23Q9C075 422 aa13.06□□□□□ -0.32
RTN3-203ENST00000341307 UBE2OQ9C0C9 1292 aaKnown RBP13.06□□□□□ -0.32
RTN3-203ENST00000341307 NDST4Q9H3R1 872 aa13.06□□□□□ -0.32
RTN3-203ENST00000341307 PCMTD2Q9NV79 361 aa13.06□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms