RNA–Protein interactions for RNA: ENST00000332797.10

CCDC28A-201, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,496 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-201ENST00000332797 SCFD2Q8WU76 684 aa18.2■□□□□ 0.5
CCDC28A-201ENST00000332797 WASF1Q92558 559 aa18.2■□□□□ 0.5
CCDC28A-201ENST00000332797 ANO3Q9BYT9 981 aa18.2■□□□□ 0.5
CCDC28A-201ENST00000332797 SYNRGQ9UMZ2 1314 aa18.2■□□□□ 0.5
CCDC28A-201ENST00000332797 RBM47A0AV96 593 aaKnown RBP18.2■□□□□ 0.5
CCDC28A-201ENST00000332797 ADAMTS3O15072 1205 aa18.2■□□□□ 0.5
CCDC28A-201ENST00000332797 FOSP01100 380 aaPredicted RBP18.2■□□□□ 0.5
CCDC28A-201ENST00000332797 FDPSP14324 419 aaKnown RBP18.2■□□□□ 0.5
CCDC28A-201ENST00000332797 PTGS1P23219 599 aa18.2■□□□□ 0.5
CCDC28A-201ENST00000332797 CLK2P49760 499 aaKnown RBP18.2■□□□□ 0.5
CCDC28A-201ENST00000332797 GJC2Q5T442 439 aaPredicted RBP18.2■□□□□ 0.5
CCDC28A-201ENST00000332797 PCNX4Q63HM2 1172 aa18.2■□□□□ 0.5
CCDC28A-201ENST00000332797 DIS3LQ8TF46 1054 aaKnown RBP18.2■□□□□ 0.5
CCDC28A-201ENST00000332797 TMX3Q96JJ7 454 aa18.2■□□□□ 0.5
CCDC28A-201ENST00000332797 ALG1Q9BT22 464 aa18.2■□□□□ 0.5
CCDC28A-201ENST00000332797 TXNP10599 105 aaKnown RBP18.19■□□□□ 0.5
CCDC28A-201ENST00000332797 XBP1P17861 261 aa18.19■□□□□ 0.5
CCDC28A-201ENST00000332797 MRPS9P82933 396 aaKnown RBP18.19■□□□□ 0.5
CCDC28A-201ENST00000332797 TTLL4Q14679 1199 aa18.19■□□□□ 0.5
CCDC28A-201ENST00000332797 LRRC41Q15345 812 aa18.19■□□□□ 0.5
CCDC28A-201ENST00000332797 DUSP28Q4G0W2 176 aa18.19■□□□□ 0.5
CCDC28A-201ENST00000332797 TLK2Q86UE8 772 aa18.19■□□□□ 0.5
CCDC28A-201ENST00000332797 ARRDC4Q8NCT1 418 aa18.19■□□□□ 0.5
CCDC28A-201ENST00000332797 RASGRP4Q8TDF6 673 aa18.19■□□□□ 0.5
CCDC28A-201ENST00000332797 LLPHQ9BRT6 129 aaKnown RBP18.19■□□□□ 0.5
CCDC28A-201ENST00000332797 KCNJ14Q9UNX9 436 aa18.19■□□□□ 0.5
CCDC28A-201ENST00000332797 GNEQ9Y223 722 aaKnown RBP18.19■□□□□ 0.5
CCDC28A-201ENST00000332797 KIAA1217Q5T5P2 1943 aa18.18■□□□□ 0.5
CCDC28A-201ENST00000332797 KBTBD13C9JR72 458 aa18.18■□□□□ 0.5
CCDC28A-201ENST00000332797 ADAMTS4O75173 837 aa18.18■□□□□ 0.5
CCDC28A-201ENST00000332797 RGS20O76081 388 aa18.18■□□□□ 0.5
CCDC28A-201ENST00000332797 ARIH2O95376 493 aa18.18■□□□□ 0.5
CCDC28A-201ENST00000332797 C6orf222P0C671 652 aaPredicted RBP18.18■□□□□ 0.5
CCDC28A-201ENST00000332797 MNX1P50219 401 aaPredicted RBP18.18■□□□□ 0.5
CCDC28A-201ENST00000332797 FOSBP53539 338 aa18.18■□□□□ 0.5
CCDC28A-201ENST00000332797 XRRA1Q6P2D8 792 aa18.18■□□□□ 0.5
CCDC28A-201ENST00000332797 RNF180Q86T96 592 aa18.18■□□□□ 0.5
CCDC28A-201ENST00000332797 FAM177A1Q8N128 213 aaPredicted RBP18.18■□□□□ 0.5
CCDC28A-201ENST00000332797 PAWRQ96IZ0 340 aaKnown RBP18.18■□□□□ 0.5
CCDC28A-201ENST00000332797 AP5M1Q9H0R1 490 aa18.18■□□□□ 0.5
CCDC28A-201ENST00000332797 SPC25Q9HBM1 224 aa18.18■□□□□ 0.5
CCDC28A-201ENST00000332797 GJB4Q9NTQ9 266 aa18.18■□□□□ 0.5
CCDC28A-201ENST00000332797 RTEL1Q9NZ71 1219 aa18.18■□□□□ 0.5
CCDC28A-201ENST00000332797 PCDHA4Q9UN74 947 aa18.18■□□□□ 0.5
CCDC28A-201ENST00000332797 MRVI1Q9Y6F6 885 aa18.18■□□□□ 0.5
CCDC28A-201ENST00000332797 DNM1LO00429 736 aa18.17■□□□□ 0.5
CCDC28A-201ENST00000332797 DYNC1LI2O43237 492 aaPredicted RBP18.17■□□□□ 0.5
CCDC28A-201ENST00000332797 STAM2O75886 525 aa18.17■□□□□ 0.5
CCDC28A-201ENST00000332797 RGS19P49795 217 aa18.17■□□□□ 0.5
CCDC28A-201ENST00000332797 GJA9P57773 515 aa18.17■□□□□ 0.5
CCDC28A-201ENST00000332797 IRX5P78411 483 aaPredicted RBP18.17■□□□□ 0.5
CCDC28A-201ENST00000332797 LY6KQ17RY6 165 aa18.17■□□□□ 0.5
CCDC28A-201ENST00000332797 MCTP2Q6DN12 878 aa18.17■□□□□ 0.5
CCDC28A-201ENST00000332797 COPS5Q92905 334 aa18.17■□□□□ 0.5
CCDC28A-201ENST00000332797 PHF20Q9BVI0 1012 aa18.17■□□□□ 0.5
CCDC28A-201ENST00000332797 UPF3AQ9H1J1 476 aaKnown RBP18.17■□□□□ 0.5
CCDC28A-201ENST00000332797 MYADML2A6NDP7 307 aa18.16■□□□□ 0.5
CCDC28A-201ENST00000332797 GNPTABQ3T906 1256 aa18.16■□□□□ 0.5
CCDC28A-201ENST00000332797 CCDC62Q6P9F0 684 aa18.16■□□□□ 0.5
CCDC28A-201ENST00000332797 NECAB2Q7Z6G3 386 aa18.16■□□□□ 0.5
CCDC28A-201ENST00000332797 UBE2Q1Q7Z7E8 422 aa18.16■□□□□ 0.5
CCDC28A-201ENST00000332797 BLIDQ8IZY5 108 aa18.16■□□□□ 0.5
CCDC28A-201ENST00000332797 DAGLBQ8NCG7 672 aa18.16■□□□□ 0.5
CCDC28A-201ENST00000332797 OR6J1Q8NGC5 347 aa18.16■□□□□ 0.5
CCDC28A-201ENST00000332797 INPP4AQ96PE3 977 aaPredicted RBP18.16■□□□□ 0.5
CCDC28A-201ENST00000332797 NKRFO15226 690 aaKnown RBP eCLIP18.15■□□□□ 0.5
CCDC28A-201ENST00000332797 SREBF1P36956 1147 aa18.15■□□□□ 0.5
CCDC28A-201ENST00000332797 HMGN5P82970 282 aaKnown RBP18.15■□□□□ 0.5
CCDC28A-201ENST00000332797 BEX3Q00994 111 aa18.15■□□□□ 0.5
CCDC28A-201ENST00000332797 NPY5RQ15761 445 aa18.15■□□□□ 0.5
CCDC28A-201ENST00000332797 GALNT17Q6IS24 598 aa18.15■□□□□ 0.5
CCDC28A-201ENST00000332797 C11orf49Q9H6J7 331 aa18.15■□□□□ 0.5
CCDC28A-201ENST00000332797 DDX41Q9UJV9 622 aaKnown RBP18.15■□□□□ 0.5
CCDC28A-201ENST00000332797 Q9Y3F1 56 aa18.15■□□□□ 0.5
CCDC28A-201ENST00000332797 ARHGAP4P98171 946 aa18.14■□□□□ 0.5
CCDC28A-201ENST00000332797 TRIM29Q14134 588 aa18.14■□□□□ 0.5
CCDC28A-201ENST00000332797 FSCN1Q16658 493 aaKnown RBP18.14■□□□□ 0.5
CCDC28A-201ENST00000332797 GNASQ5JWF2 1037 aa18.14■□□□□ 0.5
CCDC28A-201ENST00000332797 KCNV1Q6PIU1 500 aa18.14■□□□□ 0.5
CCDC28A-201ENST00000332797 NLRX1Q86UT6 975 aa18.14■□□□□ 0.5
CCDC28A-201ENST00000332797 FAM184AQ8NB25 1140 aa18.14■□□□□ 0.5
CCDC28A-201ENST00000332797 KLHDC9Q8NEP7 349 aa18.14■□□□□ 0.5
CCDC28A-201ENST00000332797 CTAGE5O15320 804 aa18.14■□□□□ 0.49
CCDC28A-201ENST00000332797 FIBPO43427 364 aa18.14■□□□□ 0.49
CCDC28A-201ENST00000332797 SORBS3O60504 671 aa18.14■□□□□ 0.49
CCDC28A-201ENST00000332797 GH1P01241 217 aa18.14■□□□□ 0.49
CCDC28A-201ENST00000332797 CST5P28325 142 aaPredicted RBP18.14■□□□□ 0.49
CCDC28A-201ENST00000332797 ZNF76P36508 570 aa18.14■□□□□ 0.49
CCDC28A-201ENST00000332797 KCNA10Q16322 511 aa18.14■□□□□ 0.49
CCDC28A-201ENST00000332797 FERMT2Q96AC1 680 aa18.14■□□□□ 0.49
CCDC28A-201ENST00000332797 UBIAD1Q9Y5Z9 338 aa18.14■□□□□ 0.49
CCDC28A-201ENST00000332797 M0R2N6 131 aa18.13■□□□□ 0.49
CCDC28A-201ENST00000332797 COL6A1P12109 1028 aa18.13■□□□□ 0.49
CCDC28A-201ENST00000332797 ITGB5P18084 799 aa18.13■□□□□ 0.49
CCDC28A-201ENST00000332797 UBA1P22314 1058 aaKnown RBP18.13■□□□□ 0.49
CCDC28A-201ENST00000332797 ARHGAP1Q07960 439 aa18.13■□□□□ 0.49
CCDC28A-201ENST00000332797 SEMA3FQ13275 785 aa18.13■□□□□ 0.49
CCDC28A-201ENST00000332797 PCSK9Q8NBP7 692 aaKnown RBP18.13■□□□□ 0.49
CCDC28A-201ENST00000332797 GPRASP2Q96D09 838 aa18.13■□□□□ 0.49
CCDC28A-201ENST00000332797 TSEN34Q9BSV6 310 aaKnown RBP18.13■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms