RNA–Protein interactions for RNA: ENST00000299185.12

DEPDC4-201, Transcript of DEP domain containing 4, humanhuman

TSL 1 (best)

Gene DEPDC4, Length 768 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4-201ENST00000299185 GUCY1B3Q02153 619 aa7.53□□□□□ -1.2
DEPDC4-201ENST00000299185 NTRK3Q16288 839 aa7.53□□□□□ -1.2
DEPDC4-201ENST00000299185 QRICH1Q2TAL8 776 aa7.53□□□□□ -1.2
DEPDC4-201ENST00000299185 USH1GQ495M9 461 aa7.53□□□□□ -1.2
DEPDC4-201ENST00000299185 ASPRV1Q53RT3 343 aa7.53□□□□□ -1.2
DEPDC4-201ENST00000299185 CCDC178Q5BJE1 867 aa7.53□□□□□ -1.2
DEPDC4-201ENST00000299185 SYNE3Q6ZMZ3 975 aa7.53□□□□□ -1.2
DEPDC4-201ENST00000299185 FANCBQ8NB91 859 aa7.53□□□□□ -1.2
DEPDC4-201ENST00000299185 REPS2Q8NFH8 660 aa7.53□□□□□ -1.2
DEPDC4-201ENST00000299185 SNX21Q969T3 373 aa7.53□□□□□ -1.2
DEPDC4-201ENST00000299185 P2RX7Q99572 595 aaKnown RBP7.53□□□□□ -1.2
DEPDC4-201ENST00000299185 SLF1Q9BQI6 1058 aa7.53□□□□□ -1.2
DEPDC4-201ENST00000299185 ALDH8A1Q9H2A2 487 aaPredicted RBP7.53□□□□□ -1.2
DEPDC4-201ENST00000299185 JMJD4Q9H9V9 463 aa7.53□□□□□ -1.2
DEPDC4-201ENST00000299185 RAVER2Q9HCJ3 691 aaKnown RBP7.53□□□□□ -1.2
DEPDC4-201ENST00000299185 HOMER2Q9NSB8 354 aa7.53□□□□□ -1.2
DEPDC4-201ENST00000299185 PGPEP1Q9NXJ5 209 aa7.53□□□□□ -1.2
DEPDC4-201ENST00000299185 BTBD7Q9P203 1132 aa7.53□□□□□ -1.2
DEPDC4-201ENST00000299185 CPA4Q9UI42 421 aa7.53□□□□□ -1.2
DEPDC4-201ENST00000299185 PPP1R9AQ9ULJ8 1098 aa7.53□□□□□ -1.2
DEPDC4-201ENST00000299185 DDX49Q9Y6V7 483 aaKnown RBP7.53□□□□□ -1.2
DEPDC4-201ENST00000299185 CDC14CA4D256 554 aa7.52□□□□□ -1.21
DEPDC4-201ENST00000299185 USP17L15C9J2P7 530 aa7.52□□□□□ -1.21
DEPDC4-201ENST00000299185 USP17L13C9JLJ4 530 aa7.52□□□□□ -1.21
DEPDC4-201ENST00000299185 USP17L11C9JVI0 530 aa7.52□□□□□ -1.21
DEPDC4-201ENST00000299185 USP17L18D6R9N7 530 aa7.52□□□□□ -1.21
DEPDC4-201ENST00000299185 USP17L22D6RA61 530 aa7.52□□□□□ -1.21
DEPDC4-201ENST00000299185 USP17L17D6RBQ6 530 aa7.52□□□□□ -1.21
DEPDC4-201ENST00000299185 USP17L19D6RCP7 530 aa7.52□□□□□ -1.21
DEPDC4-201ENST00000299185 USP17L20D6RJB6 530 aa7.52□□□□□ -1.21
DEPDC4-201ENST00000299185 ADAM23O75077 832 aa7.52□□□□□ -1.21
DEPDC4-201ENST00000299185 FDPSP14324 419 aaKnown RBP7.52□□□□□ -1.21
DEPDC4-201ENST00000299185 ANP32AP39687 249 aaKnown RBP7.52□□□□□ -1.21
DEPDC4-201ENST00000299185 LBX1P52954 281 aa7.52□□□□□ -1.21
DEPDC4-201ENST00000299185 HERVK_113P62684 666 aa7.52□□□□□ -1.21
DEPDC4-201ENST00000299185 USP17L24Q0WX57 530 aa7.52□□□□□ -1.21
DEPDC4-201ENST00000299185 CRHR2Q13324 411 aa7.52□□□□□ -1.21
DEPDC4-201ENST00000299185 ANKRD1Q15327 319 aa7.52□□□□□ -1.21
DEPDC4-201ENST00000299185 TAF1CQ15572 869 aaPredicted RBP7.52□□□□□ -1.21
DEPDC4-201ENST00000299185 TPRNQ4KMQ1 711 aa7.52□□□□□ -1.21
DEPDC4-201ENST00000299185 NOM1Q5C9Z4 860 aaKnown RBP7.52□□□□□ -1.21
DEPDC4-201ENST00000299185 FOXD4L5Q5VV16 416 aaPredicted RBP7.52□□□□□ -1.21
DEPDC4-201ENST00000299185 WWC2Q6AWC2 1192 aa7.52□□□□□ -1.21
DEPDC4-201ENST00000299185 CATSPERGQ6ZRH7 1159 aa7.52□□□□□ -1.21
DEPDC4-201ENST00000299185 HEATR3Q7Z4Q2 680 aa7.52□□□□□ -1.21
DEPDC4-201ENST00000299185 ANKRD23Q86SG2 305 aa7.52□□□□□ -1.21
DEPDC4-201ENST00000299185 ADGRF4Q8IZF3 695 aa7.52□□□□□ -1.21
DEPDC4-201ENST00000299185 CPXCR1Q8N123 301 aa7.52□□□□□ -1.21
DEPDC4-201ENST00000299185 FBXL16Q8N461 479 aa7.52□□□□□ -1.21
DEPDC4-201ENST00000299185 PROCA1Q8NCQ7 364 aaPredicted RBP7.52□□□□□ -1.21
DEPDC4-201ENST00000299185 FOXD4L4Q8WXT5 416 aaPredicted RBP7.52□□□□□ -1.21
DEPDC4-201ENST00000299185 LPAR1Q92633 364 aa7.52□□□□□ -1.21
DEPDC4-201ENST00000299185 COA7Q96BR5 231 aa7.52□□□□□ -1.21
DEPDC4-201ENST00000299185 ZNF274Q96GC6 653 aaPredicted RBP7.52□□□□□ -1.21
DEPDC4-201ENST00000299185 CHAMP1Q96JM3 812 aa7.52□□□□□ -1.21
DEPDC4-201ENST00000299185 AGBL1Q96MI9 1066 aa7.52□□□□□ -1.21
DEPDC4-201ENST00000299185 MTA3Q9BTC8 594 aa7.52□□□□□ -1.21
DEPDC4-201ENST00000299185 BEGAINQ9BUH8 593 aa7.52□□□□□ -1.21
DEPDC4-201ENST00000299185 VPS54Q9P1Q0 977 aa7.52□□□□□ -1.21
DEPDC4-201ENST00000299185 ZNF536O15090 1300 aa7.52□□□□□ -1.21
DEPDC4-201ENST00000299185 BAZ2BQ9UIF8 2168 aaKnown RBP7.52□□□□□ -1.21
DEPDC4-201ENST00000299185 MANSC4A6NHS7 340 aaPredicted RBP7.51□□□□□ -1.21
DEPDC4-201ENST00000299185 C19orf81C9J6K1 198 aa7.51□□□□□ -1.21
DEPDC4-201ENST00000299185 CPLX1O14810 134 aa7.51□□□□□ -1.21
DEPDC4-201ENST00000299185 TBC1D8O95759 1140 aa7.51□□□□□ -1.21
DEPDC4-201ENST00000299185 KIF5BP33176 963 aa7.51□□□□□ -1.21
DEPDC4-201ENST00000299185 STAT2P52630 851 aa7.51□□□□□ -1.21
DEPDC4-201ENST00000299185 SRSF11Q05519 484 aaKnown RBP7.51□□□□□ -1.21
DEPDC4-201ENST00000299185 CUL4AQ13619 759 aa7.51□□□□□ -1.21
DEPDC4-201ENST00000299185 PLS1Q14651 629 aa7.51□□□□□ -1.21
DEPDC4-201ENST00000299185 TMEM132BQ14DG7 1078 aa7.51□□□□□ -1.21
DEPDC4-201ENST00000299185 PKN1Q16512 942 aa7.51□□□□□ -1.21
DEPDC4-201ENST00000299185 MUM1L1Q5H9M0 696 aa7.51□□□□□ -1.21
DEPDC4-201ENST00000299185 Q6ZVU0 165 aa7.51□□□□□ -1.21
DEPDC4-201ENST00000299185 SH3RF1Q7Z6J0 888 aa7.51□□□□□ -1.21
DEPDC4-201ENST00000299185 ANKRD13CQ8N6S4 541 aa7.51□□□□□ -1.21
DEPDC4-201ENST00000299185 RASGRP4Q8TDF6 673 aa7.51□□□□□ -1.21
DEPDC4-201ENST00000299185 PGBD1Q96JS3 809 aa7.51□□□□□ -1.21
DEPDC4-201ENST00000299185 SPZ1Q9BXG8 430 aa7.51□□□□□ -1.21
DEPDC4-201ENST00000299185 ARHGAP39Q9C0H5 1083 aa7.51□□□□□ -1.21
DEPDC4-201ENST00000299185 RANBP17Q9H2T7 1088 aaKnown RBP7.51□□□□□ -1.21
DEPDC4-201ENST00000299185 SH2B1Q9NRF2 756 aaPredicted RBP7.51□□□□□ -1.21
DEPDC4-201ENST00000299185 ORC3Q9UBD5 711 aaPredicted RBP7.51□□□□□ -1.21
DEPDC4-201ENST00000299185 KCNJ14Q9UNX9 436 aa7.51□□□□□ -1.21
DEPDC4-201ENST00000299185 RIPK3Q9Y572 518 aa7.51□□□□□ -1.21
DEPDC4-201ENST00000299185 STXBP3O00186 592 aa7.5□□□□□ -1.21
DEPDC4-201ENST00000299185 VWA5AO00534 786 aa7.5□□□□□ -1.21
DEPDC4-201ENST00000299185 NFIBO00712 420 aa7.5□□□□□ -1.21
DEPDC4-201ENST00000299185 CALM1P0DP23 149 aa7.5□□□□□ -1.21
DEPDC4-201ENST00000299185 CALM2P0DP24 149 aa7.5□□□□□ -1.21
DEPDC4-201ENST00000299185 CALM3P0DP25 149 aa7.5□□□□□ -1.21
DEPDC4-201ENST00000299185 ALAS1P13196 640 aa7.5□□□□□ -1.21
DEPDC4-201ENST00000299185 IFNAR1P17181 557 aa7.5□□□□□ -1.21
DEPDC4-201ENST00000299185 GJB2P29033 226 aa7.5□□□□□ -1.21
DEPDC4-201ENST00000299185 CTGFP29279 349 aa7.5□□□□□ -1.21
DEPDC4-201ENST00000299185 NT5C2P49902 561 aa7.5□□□□□ -1.21
DEPDC4-201ENST00000299185 PDE4DQ08499 809 aa7.5□□□□□ -1.21
DEPDC4-201ENST00000299185 NOGQ13253 232 aa7.5□□□□□ -1.21
DEPDC4-201ENST00000299185 PKP1Q13835 747 aa7.5□□□□□ -1.21
DEPDC4-201ENST00000299185 UBE2SQ16763 222 aa7.5□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms