RNA–Protein interactions for RNA: snR39B

snR39B, Transcript of C/D box small nucleolar RNA (snoRNA), yeast

Gene snR39B, Length 96 nt, Biotype snoRNA.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
snR39B	snR39B	RRD2	Q12461	358 aa		0.44	□□□□□ -2.34
snR39B	snR39B	NFT1	P0CE68	1218 aa		0.43	□□□□□ -2.34
snR39B	snR39B	SST2	P11972	698 aa	Known RBP	0.43	□□□□□ -2.34
snR39B	snR39B	ART10	P18634	518 aa	Known RBP	0.43	□□□□□ -2.34
snR39B	snR39B	PWP1	P21304	576 aa	Known RBP	0.43	□□□□□ -2.34
snR39B	snR39B	BOS1	P25385	244 aa		0.43	□□□□□ -2.34
snR39B	snR39B	TPS2	P31688	896 aa	Known RBP	0.43	□□□□□ -2.34
snR39B	snR39B	PDB1	P32473	366 aa	Known RBP	0.43	□□□□□ -2.34
snR39B	snR39B	SHP1	P34223	423 aa		0.43	□□□□□ -2.34
snR39B	snR39B	ICS2	P38284	255 aa		0.43	□□□□□ -2.34
snR39B	snR39B	PAF1	P38351	445 aa		0.43	□□□□□ -2.34
snR39B	snR39B	UME6	P39001	836 aa		0.43	□□□□□ -2.34
snR39B	snR39B	VPS27	P40343	622 aa	Known RBP	0.43	□□□□□ -2.34
snR39B	snR39B	OST1	P41543	476 aa	Known RBP	0.43	□□□□□ -2.34
snR39B	snR39B	FAR3	P46671	204 aa		0.43	□□□□□ -2.34
snR39B	snR39B	RPS7B	P48164	190 aa	Known RBP	0.43	□□□□□ -2.34
snR39B	snR39B	ATP22	P50273	684 aa	Predicted RBP	0.43	□□□□□ -2.34
snR39B	snR39B	PIL1	P53252	339 aa	Known RBP	0.43	□□□□□ -2.34
snR39B	snR39B	REG1	Q00816	1014 aa		0.43	□□□□□ -2.34
snR39B	snR39B	MRP51	Q02950	344 aa		0.43	□□□□□ -2.34
snR39B	snR39B	ODC1	Q03028	310 aa		0.43	□□□□□ -2.34
snR39B	snR39B	RBS1	Q05672	457 aa	Known RBP	0.43	□□□□□ -2.34
snR39B	snR39B	YPR195C	Q06594	109 aa		0.43	□□□□□ -2.34
snR39B	snR39B	HIM1	Q06674	414 aa		0.43	□□□□□ -2.34
snR39B	snR39B	MUM3	Q08750	479 aa		0.43	□□□□□ -2.34
snR39B	snR39B	KEL3	Q08979	651 aa	Predicted RBP	0.43	□□□□□ -2.34
snR39B	snR39B	PEP4	P07267	405 aa	Known RBP	0.42	□□□□□ -2.34
snR39B	snR39B	GLK1	P17709	500 aa	Known RBP	0.42	□□□□□ -2.34
snR39B	snR39B	KGD1	P20967	1014 aa	Known RBP	0.42	□□□□□ -2.34
snR39B	snR39B	VMA16	P23968	213 aa		0.42	□□□□□ -2.34
snR39B	snR39B	SMY1	P32364	656 aa	Known RBP	0.42	□□□□□ -2.34
snR39B	snR39B	IES6	P32617	166 aa		0.42	□□□□□ -2.34
snR39B	snR39B	GRX4	P32642	244 aa		0.42	□□□□□ -2.34
snR39B	snR39B	NUP133	P36161	1157 aa		0.42	□□□□□ -2.34
snR39B	snR39B	RIB5	P38145	238 aa		0.42	□□□□□ -2.34
snR39B	snR39B	PGU1	P47180	361 aa		0.42	□□□□□ -2.34
snR39B	snR39B	YGR018C	P53211	109 aa		0.42	□□□□□ -2.34
snR39B	snR39B	MRPS16	Q02608	121 aa		0.42	□□□□□ -2.34
snR39B	snR39B	MUB1	Q03162	620 aa		0.42	□□□□□ -2.34
snR39B	snR39B	VIP1	Q06685	1146 aa	Known RBP	0.42	□□□□□ -2.34
snR39B	snR39B	YDL057W	Q07379	328 aa		0.42	□□□□□ -2.34
snR39B	snR39B	PSR1	Q07800	427 aa		0.42	□□□□□ -2.34
snR39B	snR39B	DNL4	Q08387	944 aa	Predicted RBP	0.42	□□□□□ -2.34
snR39B	snR39B	BRR1	Q99177	341 aa	Predicted RBP	0.42	□□□□□ -2.34
snR39B	snR39B	ADH1	P00330	348 aa	Known RBP	0.41	□□□□□ -2.34
snR39B	snR39B	YAR066W	P0CX18	203 aa		0.41	□□□□□ -2.34
snR39B	snR39B	YHR214W	P0CX19	203 aa		0.41	□□□□□ -2.34
snR39B	snR39B	EST1	P17214	699 aa	Predicted RBP	0.41	□□□□□ -2.34
snR39B	snR39B	PRR1	P28708	518 aa		0.41	□□□□□ -2.34
snR39B	snR39B	RPL32	P38061	130 aa	Known RBP	0.41	□□□□□ -2.34
snR39B	snR39B	YBR137W	P38276	179 aa		0.41	□□□□□ -2.34
snR39B	snR39B	YBR225W	P38321	900 aa		0.41	□□□□□ -2.34
snR39B	snR39B	CIN4	P39110	191 aa		0.41	□□□□□ -2.34
snR39B	snR39B	MIG3	P39943	394 aa		0.41	□□□□□ -2.34
snR39B	snR39B	YER186C	P40101	306 aa		0.41	□□□□□ -2.34
snR39B	snR39B	VPS4	P52917	437 aa		0.41	□□□□□ -2.34
snR39B	snR39B	TAN1	P53072	289 aa	Predicted RBP	0.41	□□□□□ -2.34
snR39B	snR39B	PAP2	P53632	584 aa	Known RBP	0.41	□□□□□ -2.34
snR39B	snR39B	ARC35	P53731	342 aa	Known RBP	0.41	□□□□□ -2.34
snR39B	snR39B	CBK1	P53894	756 aa		0.41	□□□□□ -2.34
snR39B	snR39B	KTR6	P54070	446 aa		0.41	□□□□□ -2.34
snR39B	snR39B	HXT11	P54862	567 aa		0.41	□□□□□ -2.34
snR39B	snR39B	TPS1	Q00764	495 aa	Known RBP	0.41	□□□□□ -2.34
snR39B	snR39B	YDR239C	Q03780	787 aa		0.41	□□□□□ -2.34
snR39B	snR39B	DPB4	Q04603	196 aa	Known RBP	0.41	□□□□□ -2.34
snR39B	snR39B	SKG3	Q06315	1026 aa		0.41	□□□□□ -2.34
snR39B	snR39B	MCH1	Q07376	486 aa		0.41	□□□□□ -2.34
snR39B	snR39B	AHC1	Q12433	566 aa		0.41	□□□□□ -2.34
snR39B	snR39B	MPD2	Q99316	277 aa		0.41	□□□□□ -2.34
snR39B	snR39B	RAD61	Q99359	647 aa		0.41	□□□□□ -2.34
snR39B	snR39B	YPR096C	O13587	100 aa		0.4	□□□□□ -2.35
snR39B	snR39B	TRP1	P00912	224 aa		0.4	□□□□□ -2.35
snR39B	snR39B	COX4	P04037	155 aa		0.4	□□□□□ -2.35
snR39B	snR39B	RPB2	P08518	1224 aa	Known RBP	0.4	□□□□□ -2.35
snR39B	snR39B	AAT2	P23542	418 aa	Known RBP	0.4	□□□□□ -2.35
snR39B	snR39B	PUP3	P25451	205 aa	Known RBP	0.4	□□□□□ -2.35
snR39B	snR39B	YCR100C	P25606	316 aa		0.4	□□□□□ -2.35
snR39B	snR39B	YBL055C	P34220	418 aa	Predicted RBP	0.4	□□□□□ -2.35
snR39B	snR39B	IFA38	P38286	347 aa		0.4	□□□□□ -2.35
snR39B	snR39B	SPO73	P40031	143 aa		0.4	□□□□□ -2.35
snR39B	snR39B	ALK1	P43633	760 aa	Known RBP	0.4	□□□□□ -2.35
snR39B	snR39B	URB2	P47108	1174 aa		0.4	□□□□□ -2.35
snR39B	snR39B	APT1	P49435	187 aa	Known RBP	0.4	□□□□□ -2.35
snR39B	snR39B	YIP5	P53108	310 aa		0.4	□□□□□ -2.35
snR39B	snR39B	RRT6	P53117	311 aa	Predicted RBP	0.4	□□□□□ -2.35
snR39B	snR39B	RPN14	P53196	417 aa		0.4	□□□□□ -2.35
snR39B	snR39B	PCP1	P53259	346 aa		0.4	□□□□□ -2.35
snR39B	snR39B	PNG1	Q02890	363 aa		0.4	□□□□□ -2.35
snR39B	snR39B	YMR181C	Q03231	154 aa		0.4	□□□□□ -2.35
snR39B	snR39B	SLF1	Q12034	447 aa	Known RBP	0.4	□□□□□ -2.35
snR39B	snR39B	JID1	Q12350	301 aa		0.4	□□□□□ -2.35
snR39B	snR39B	CYC3	P06182	269 aa		0.39	□□□□□ -2.35
snR39B	snR39B	LEU4	P06208	619 aa	Known RBP	0.39	□□□□□ -2.35
snR39B	snR39B	SAM1	P10659	382 aa	Known RBP	0.39	□□□□□ -2.35
snR39B	snR39B	SAM2	P19358	384 aa	Known RBP	0.39	□□□□□ -2.35
snR39B	snR39B	RPI1	P23250	407 aa	Known RBP	0.39	□□□□□ -2.35
snR39B	snR39B	YCL049C	P25577	312 aa		0.39	□□□□□ -2.35
snR39B	snR39B	BUB3	P26449	341 aa		0.39	□□□□□ -2.35
snR39B	snR39B	KAR9	P32526	644 aa		0.39	□□□□□ -2.35
snR39B	snR39B	RML2	P32611	393 aa		0.39	□□□□□ -2.35

Retrieved 100 of 5,963 RNA–protein pairs in 17.1 ms