RNA–Protein interactions for RNA: YDR330W

UBX5, Transcript of UBX domain-containing protein that interacts with Cdc48p, yeast

Gene UBX5, Length 1,503 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
UBX5	YDR330W	MRH1	Q12117	320 aa	Predicted RBP	3.9	□□□□□ -1.79
UBX5	YDR330W	BI2	P03873	423 aa		3.89	□□□□□ -1.79
UBX5	YDR330W	GAL80	P04387	435 aa		3.89	□□□□□ -1.79
UBX5	YDR330W	MRP2	P10663	115 aa	Predicted RBP	3.89	□□□□□ -1.79
UBX5	YDR330W	AAD3	P25612	363 aa		3.89	□□□□□ -1.79
UBX5	YDR330W	RPC34	P32910	317 aa		3.89	□□□□□ -1.79
UBX5	YDR330W	OAR1	P35731	278 aa		3.89	□□□□□ -1.79
UBX5	YDR330W	OCT1	P35999	772 aa		3.89	□□□□□ -1.79
UBX5	YDR330W	MCR1	P36060	302 aa	Known RBP	3.89	□□□□□ -1.79
UBX5	YDR330W	MOH1	P38191	138 aa		3.89	□□□□□ -1.79
UBX5	YDR330W	ALG5	P40350	334 aa		3.89	□□□□□ -1.79
UBX5	YDR330W	LCB2	P40970	561 aa		3.89	□□□□□ -1.79
UBX5	YDR330W	MAF1	P41910	395 aa		3.89	□□□□□ -1.79
UBX5	YDR330W	YFR020W	P43600	232 aa		3.89	□□□□□ -1.79
UBX5	YDR330W	COS5	P47187	383 aa		3.89	□□□□□ -1.79
UBX5	YDR330W	NNF2	P53253	936 aa		3.89	□□□□□ -1.79
UBX5	YDR330W	GND2	P53319	492 aa		3.89	□□□□□ -1.79
UBX5	YDR330W	NCS2	P53923	493 aa	Predicted RBP	3.89	□□□□□ -1.79
UBX5	YDR330W	ARK1	P53974	638 aa		3.89	□□□□□ -1.79
UBX5	YDR330W	YDR239C	Q03780	787 aa		3.89	□□□□□ -1.79
UBX5	YDR330W	YLR297W	Q05899	129 aa		3.89	□□□□□ -1.79
UBX5	YDR330W	ARO10	Q06408	635 aa		3.89	□□□□□ -1.79
UBX5	YDR330W	TSR1	Q07381	788 aa	Known RBP	3.89	□□□□□ -1.79
UBX5	YDR330W	NOP6	Q07623	225 aa	Known RBP	3.89	□□□□□ -1.79
UBX5	YDR330W	RLP24	Q07915	199 aa	Known RBP	3.89	□□□□□ -1.79
UBX5	YDR330W	YOR389W	Q08912	624 aa		3.89	□□□□□ -1.79
UBX5	YDR330W	ULA1	Q12059	462 aa		3.89	□□□□□ -1.79
UBX5	YDR330W	TY1B-A	O13527	1196 aa	Known RBP	3.88	□□□□□ -1.79
UBX5	YDR330W	ERG11	P10614	530 aa		3.88	□□□□□ -1.79
UBX5	YDR330W	TCP1	P12612	559 aa	Known RBP	3.88	□□□□□ -1.79
UBX5	YDR330W	PMS1	P14242	873 aa		3.88	□□□□□ -1.79
UBX5	YDR330W	PDA1	P16387	420 aa	Known RBP	3.88	□□□□□ -1.79
UBX5	YDR330W	SSE2	P32590	693 aa	Known RBP	3.88	□□□□□ -1.79
UBX5	YDR330W	YSC83	P32792	385 aa		3.88	□□□□□ -1.79
UBX5	YDR330W	SNU114	P36048	1008 aa	Known RBP	3.88	□□□□□ -1.79
UBX5	YDR330W	CMC1	P36064	111 aa		3.88	□□□□□ -1.79
UBX5	YDR330W	TCD2	P36101	447 aa	Known RBP	3.88	□□□□□ -1.79
UBX5	YDR330W	YKL023W	P36103	277 aa	Known RBP	3.88	□□□□□ -1.79
UBX5	YDR330W	MNN2	P38069	597 aa		3.88	□□□□□ -1.79
UBX5	YDR330W	LRP1	P38801	184 aa	Known RBP	3.88	□□□□□ -1.79
UBX5	YDR330W	EXO1	P39875	702 aa		3.88	□□□□□ -1.79
UBX5	YDR330W	SGN1	P40561	250 aa	Known RBP RIP-Chip data	3.88	□□□□□ -1.79	not detected
UBX5	YDR330W	YJL043W	P47053	257 aa		3.88	□□□□□ -1.79
UBX5	YDR330W	VPS73	P53142	486 aa	Known RBP	3.88	□□□□□ -1.79
UBX5	YDR330W	YGL039W	P53183	348 aa	Known RBP	3.88	□□□□□ -1.79
UBX5	YDR330W	ZPR1	P53303	486 aa	Known RBP	3.88	□□□□□ -1.79
UBX5	YDR330W	CWC22	P53333	577 aa	Known RBP	3.88	□□□□□ -1.79
UBX5	YDR330W	OGG1	P53397	376 aa	Predicted RBP	3.88	□□□□□ -1.79
UBX5	YDR330W	ESBP6	P53918	673 aa		3.88	□□□□□ -1.79
UBX5	YDR330W	EFM6	P53970	246 aa		3.88	□□□□□ -1.79
UBX5	YDR330W	FIN1	Q03898	291 aa		3.88	□□□□□ -1.79
UBX5	YDR330W	GYL1	Q04322	720 aa		3.88	□□□□□ -1.79
UBX5	YDR330W	VTI1	Q04338	217 aa		3.88	□□□□□ -1.79
UBX5	YDR330W	YMR114C	Q04471	368 aa	Known RBP	3.88	□□□□□ -1.79
UBX5	YDR330W	TMN2	Q04562	672 aa		3.88	□□□□□ -1.79
UBX5	YDR330W	LEU9	Q12166	604 aa	Known RBP	3.88	□□□□□ -1.79
UBX5	YDR330W	ADK2	P26364	225 aa		3.87	□□□□□ -1.79
UBX5	YDR330W	GSH1	P32477	678 aa		3.87	□□□□□ -1.79
UBX5	YDR330W	GCG1	P32656	232 aa	Known RBP	3.87	□□□□□ -1.79
UBX5	YDR330W	SHP1	P34223	423 aa		3.87	□□□□□ -1.79
UBX5	YDR330W	YEL020C	P39994	560 aa		3.87	□□□□□ -1.79
UBX5	YDR330W	VAB2	P40003	282 aa		3.87	□□□□□ -1.79
UBX5	YDR330W	MIC19	P43594	170 aa		3.87	□□□□□ -1.79
UBX5	YDR330W	CTK3	P46963	296 aa	Predicted RBP	3.87	□□□□□ -1.79
UBX5	YDR330W	PET130	P47065	347 aa		3.87	□□□□□ -1.79
UBX5	YDR330W	MRK1	P50873	501 aa		3.87	□□□□□ -1.79
UBX5	YDR330W	KAP114	P53067	1004 aa		3.87	□□□□□ -1.79
UBX5	YDR330W	TWF1	P53250	332 aa		3.87	□□□□□ -1.79
UBX5	YDR330W	VPS9	P54787	451 aa		3.87	□□□□□ -1.79
UBX5	YDR330W	TIM8	P57744	87 aa		3.87	□□□□□ -1.79
UBX5	YDR330W	VTC3	Q02725	835 aa		3.87	□□□□□ -1.79
UBX5	YDR330W	DIG1	Q03063	452 aa	Known RBP	3.87	□□□□□ -1.79
UBX5	YDR330W	YDR131C	Q03899	556 aa		3.87	□□□□□ -1.79
UBX5	YDR330W	DPB4	Q04603	196 aa	Known RBP	3.87	□□□□□ -1.79
UBX5	YDR330W	RQC1	Q05468	723 aa	Known RBP	3.87	□□□□□ -1.79
UBX5	YDR330W	DON1	Q05610	365 aa		3.87	□□□□□ -1.79
UBX5	YDR330W	ECM22	Q05958	814 aa	Predicted RBP	3.87	□□□□□ -1.79
UBX5	YDR330W	RAD34	Q06665	692 aa		3.87	□□□□□ -1.79
UBX5	YDR330W	YLR049C	Q12110	428 aa		3.87	□□□□□ -1.79
UBX5	YDR330W	YOL159C-A	Q3E769	90 aa		3.87	□□□□□ -1.79
UBX5	YDR330W	QCR6	P00127	147 aa		3.86	□□□□□ -1.79
UBX5	YDR330W	CDC8	P00572	216 aa		3.86	□□□□□ -1.79
UBX5	YDR330W	ADE5,7	P07244	802 aa	Known RBP	3.86	□□□□□ -1.79
UBX5	YDR330W	APN1	P22936	367 aa		3.86	□□□□□ -1.79
UBX5	YDR330W	SYN8	P31377	255 aa		3.86	□□□□□ -1.79
UBX5	YDR330W	MSS51	P32335	436 aa		3.86	□□□□□ -1.79
UBX5	YDR330W	UTR4	P32626	227 aa		3.86	□□□□□ -1.79
UBX5	YDR330W	EMP70	P32802	667 aa		3.86	□□□□□ -1.79
UBX5	YDR330W	MRE11	P32829	692 aa		3.86	□□□□□ -1.79
UBX5	YDR330W	WBP1	P33767	430 aa	Known RBP	3.86	□□□□□ -1.79
UBX5	YDR330W	YBR144C	P34215	104 aa		3.86	□□□□□ -1.79
UBX5	YDR330W	ELO1	P39540	310 aa		3.86	□□□□□ -1.79
UBX5	YDR330W	PTR3	P43606	678 aa		3.86	□□□□□ -1.79
UBX5	YDR330W	IMD4	P50094	524 aa	Known RBP	3.86	□□□□□ -1.79
UBX5	YDR330W	IPI3	P53877	555 aa		3.86	□□□□□ -1.79
UBX5	YDR330W	CIK1	Q01649	594 aa		3.86	□□□□□ -1.79
UBX5	YDR330W	URH1	Q04179	340 aa		3.86	□□□□□ -1.79
UBX5	YDR330W	ECI1	Q05871	280 aa		3.86	□□□□□ -1.79
UBX5	YDR330W	RAP1	P11938	827 aa		3.85	□□□□□ -1.79
UBX5	YDR330W	TKL1	P23254	680 aa	Known RBP	3.85	□□□□□ -1.79

Retrieved 100 of 5,963 RNA–protein pairs in 22.2 ms