RNA–Protein interactions for RNA: ENST00000636194.1

SCN1A-212, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 8,508 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-212ENST00000636194 DCAF15Q66K64 600 aa6.5□□□□□ -1.37
SCN1A-212ENST00000636194 CAPRIN2Q6IMN6 1127 aaKnown RBP6.5□□□□□ -1.37
SCN1A-212ENST00000636194 KSR2Q6VAB6 950 aa6.5□□□□□ -1.37
SCN1A-212ENST00000636194 VPS39Q96JC1 886 aa6.5□□□□□ -1.37
SCN1A-212ENST00000636194 FRMD6Q96NE9 622 aa6.5□□□□□ -1.37
SCN1A-212ENST00000636194 SNX5Q9Y5X3 404 aa6.5□□□□□ -1.37
SCN1A-212ENST00000636194 PIK3R4Q99570 1358 aa6.5□□□□□ -1.37
SCN1A-212ENST00000636194 WDR17Q8IZU2 1322 aa6.5□□□□□ -1.37
SCN1A-212ENST00000636194 MYL1P05976 194 aa6.5□□□□□ -1.37
SCN1A-212ENST00000636194 XRCC5P13010 732 aaKnown RBP6.5□□□□□ -1.37
SCN1A-212ENST00000636194 CCDC130P13994 396 aa6.5□□□□□ -1.37
SCN1A-212ENST00000636194 FOXD4Q12950 439 aaPredicted RBP6.5□□□□□ -1.37
SCN1A-212ENST00000636194 TEDDM1Q5T9Z0 273 aa6.5□□□□□ -1.37
SCN1A-212ENST00000636194 NCAPG2Q86XI2 1143 aa6.5□□□□□ -1.37
SCN1A-212ENST00000636194 BRIP1Q9BX63 1249 aa6.5□□□□□ -1.37
SCN1A-212ENST00000636194 KIAA1468Q9P260 1216 aa6.5□□□□□ -1.37
SCN1A-212ENST00000636194 MYH14Q7Z406 1995 aaKnown RBP6.5□□□□□ -1.37
SCN1A-212ENST00000636194 MCF2LO15068 1137 aa6.5□□□□□ -1.37
SCN1A-212ENST00000636194 ZNF189O75820 626 aaPredicted RBP6.5□□□□□ -1.37
SCN1A-212ENST00000636194 SUN1O94901 812 aa6.5□□□□□ -1.37
SCN1A-212ENST00000636194 SNAP25P60880 206 aa6.5□□□□□ -1.37
SCN1A-212ENST00000636194 CCNA1P78396 465 aa6.5□□□□□ -1.37
SCN1A-212ENST00000636194 IDI1Q13907 227 aa6.5□□□□□ -1.37
SCN1A-212ENST00000636194 USH1GQ495M9 461 aa6.5□□□□□ -1.37
SCN1A-212ENST00000636194 IRAK1BP1Q5VVH5 260 aa6.5□□□□□ -1.37
SCN1A-212ENST00000636194 TTC23Q5W5X9 447 aa6.5□□□□□ -1.37
SCN1A-212ENST00000636194 DYRK4Q9NR20 520 aa6.5□□□□□ -1.37
SCN1A-212ENST00000636194 MAN1C1Q9NR34 630 aa6.5□□□□□ -1.37
SCN1A-212ENST00000636194 KLF18A0A0U1RQI7 1052 aa6.5□□□□□ -1.37
SCN1A-212ENST00000636194 ZW10O43264 779 aa6.5□□□□□ -1.37
SCN1A-212ENST00000636194 KDM1AO60341 852 aa6.5□□□□□ -1.37
SCN1A-212ENST00000636194 SIX6OS1Q8N1H7 587 aa6.5□□□□□ -1.37
SCN1A-212ENST00000636194 MYCT1Q8N699 235 aa6.5□□□□□ -1.37
SCN1A-212ENST00000636194 CDC26Q8NHZ8 85 aa6.5□□□□□ -1.37
SCN1A-212ENST00000636194 RNF139Q8WU17 664 aa6.5□□□□□ -1.37
SCN1A-212ENST00000636194 RABGGTAQ92696 567 aa6.5□□□□□ -1.37
SCN1A-212ENST00000636194 DHX58Q96C10 678 aa6.5□□□□□ -1.37
SCN1A-212ENST00000636194 MRPL48Q96GC5 212 aaKnown RBP6.5□□□□□ -1.37
SCN1A-212ENST00000636194 TRIM54Q9BYV2 358 aa6.5□□□□□ -1.37
SCN1A-212ENST00000636194 MAGEB5Q9BZ81 275 aa6.5□□□□□ -1.37
SCN1A-212ENST00000636194 KLC2Q9H0B6 622 aa6.5□□□□□ -1.37
SCN1A-212ENST00000636194 NAIPQ13075 1403 aa6.5□□□□□ -1.37
SCN1A-212ENST00000636194 SYNRGQ9UMZ2 1314 aa6.5□□□□□ -1.37
SCN1A-212ENST00000636194 ERICH3Q5RHP9 1530 aa6.5□□□□□ -1.37
SCN1A-212ENST00000636194 H7C1D1 291 aa6.5□□□□□ -1.37
SCN1A-212ENST00000636194 SPTLC2O15270 562 aa6.5□□□□□ -1.37
SCN1A-212ENST00000636194 ASAP2O43150 1006 aa6.5□□□□□ -1.37
SCN1A-212ENST00000636194 TFDP1Q14186 410 aa6.5□□□□□ -1.37
SCN1A-212ENST00000636194 CALCRLQ16602 461 aa6.5□□□□□ -1.37
SCN1A-212ENST00000636194 IMPG1Q17R60 797 aa6.5□□□□□ -1.37
SCN1A-212ENST00000636194 RETREG2Q8NC44 543 aa6.5□□□□□ -1.37
SCN1A-212ENST00000636194 JPH4Q96JJ6 628 aa6.5□□□□□ -1.37
SCN1A-212ENST00000636194 SH3GL2Q99962 352 aa6.5□□□□□ -1.37
SCN1A-212ENST00000636194 TACO1Q9BSH4 297 aaKnown RBP6.5□□□□□ -1.37
SCN1A-212ENST00000636194 TUFT1Q9NNX1 390 aa6.5□□□□□ -1.37
SCN1A-212ENST00000636194 HELLSQ9NRZ9 838 aa6.5□□□□□ -1.37
SCN1A-212ENST00000636194 SOS2Q07890 1332 aaPredicted RBP6.5□□□□□ -1.37
SCN1A-212ENST00000636194 PASKQ96RG2 1323 aa6.5□□□□□ -1.37
SCN1A-212ENST00000636194 EXOC3O60645 756 aa6.5□□□□□ -1.37
SCN1A-212ENST00000636194 SNX2O60749 519 aa6.5□□□□□ -1.37
SCN1A-212ENST00000636194 CPP00450 1065 aa6.5□□□□□ -1.37
SCN1A-212ENST00000636194 MYCLP12524 364 aaPredicted RBP6.5□□□□□ -1.37
SCN1A-212ENST00000636194 ZSCAN20P17040 1043 aaPredicted RBP6.5□□□□□ -1.37
SCN1A-212ENST00000636194 ARL4AP40617 200 aa6.5□□□□□ -1.37
SCN1A-212ENST00000636194 PEX19P40855 299 aa6.5□□□□□ -1.37
SCN1A-212ENST00000636194 PMS2P54278 862 aa6.5□□□□□ -1.37
SCN1A-212ENST00000636194 NOLC1Q14978 699 aaKnown RBP eCLIP6.5□□□□□ -1.37
SCN1A-212ENST00000636194 FAM160B1Q5W0V3 765 aa6.5□□□□□ -1.37
SCN1A-212ENST00000636194 KRT26Q7Z3Y9 468 aa6.5□□□□□ -1.37
SCN1A-212ENST00000636194 MIGA1Q8NAN2 632 aa6.5□□□□□ -1.37
SCN1A-212ENST00000636194 BCAS4Q8TDM0 211 aa6.5□□□□□ -1.37
SCN1A-212ENST00000636194 SLC26A7Q8TE54 656 aa6.5□□□□□ -1.37
SCN1A-212ENST00000636194 SECISBP2LQ93073 1101 aaKnown RBP6.5□□□□□ -1.37
SCN1A-212ENST00000636194 COPG2Q9UBF2 871 aa6.5□□□□□ -1.37
SCN1A-212ENST00000636194 NKTRP30414 1462 aaKnown RBP6.5□□□□□ -1.37
SCN1A-212ENST00000636194 FAM47E-STBD1D6RA91 191 aa6.49□□□□□ -1.37
SCN1A-212ENST00000636194 EEF1GP26641 437 aaKnown RBP6.49□□□□□ -1.37
SCN1A-212ENST00000636194 MYO1EQ12965 1108 aa6.49□□□□□ -1.37
SCN1A-212ENST00000636194 TLK2Q86UE8 772 aa6.49□□□□□ -1.37
SCN1A-212ENST00000636194 L3MBTL1Q9Y468 752 aa6.49□□□□□ -1.37
SCN1A-212ENST00000636194 SYNJ2O15056 1496 aa6.49□□□□□ -1.37
SCN1A-212ENST00000636194 APC2O95996 2303 aa6.49□□□□□ -1.37
SCN1A-212ENST00000636194 ATP1A2P50993 1020 aa6.49□□□□□ -1.37
SCN1A-212ENST00000636194 TBC1D8BQ0IIM8 1120 aa6.49□□□□□ -1.37
SCN1A-212ENST00000636194 SFMBT2Q5VUG0 894 aa6.49□□□□□ -1.37
SCN1A-212ENST00000636194 ARHGEF16Q5VV41 709 aa6.49□□□□□ -1.37
SCN1A-212ENST00000636194 APPL2Q8NEU8 664 aa6.49□□□□□ -1.37
SCN1A-212ENST00000636194 DEPDC7Q96QD5 511 aa6.49□□□□□ -1.37
SCN1A-212ENST00000636194 TRIM62Q9BVG3 475 aa6.49□□□□□ -1.37
SCN1A-212ENST00000636194 DDX28Q9NUL7 540 aaKnown RBP6.49□□□□□ -1.37
SCN1A-212ENST00000636194 TFCP2L1Q9NZI6 479 aa6.49□□□□□ -1.37
SCN1A-212ENST00000636194 ATP11BQ9Y2G3 1177 aa6.49□□□□□ -1.37
SCN1A-212ENST00000636194 MSH6P52701 1360 aa6.49□□□□□ -1.37
SCN1A-212ENST00000636194 PEX1O43933 1283 aa6.49□□□□□ -1.37
SCN1A-212ENST00000636194 WDR47O94967 919 aa6.49□□□□□ -1.37
SCN1A-212ENST00000636194 SLFN12LQ6IEE8 588 aa6.49□□□□□ -1.37
SCN1A-212ENST00000636194 SH3BP5LQ7L8J4 393 aa6.49□□□□□ -1.37
SCN1A-212ENST00000636194 MICALL2Q8IY33 904 aa6.49□□□□□ -1.37
SCN1A-212ENST00000636194 SCYL3Q8IZE3 742 aa6.49□□□□□ -1.37
SCN1A-212ENST00000636194 DNAAF3Q8N9W5 541 aa6.49□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms