RNA–Protein interactions for RNA: ENST00000600552.5

SHKBP1-223, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 4

Gene SHKBP1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-223ENST00000600552 IRX6P78412 446 aaPredicted RBP20.54■□□□□ 0.88
SHKBP1-223ENST00000600552 NBPF20Q3BBV1 942 aa20.54■□□□□ 0.88
SHKBP1-223ENST00000600552 DEFB128Q7Z7B8 93 aa20.54■□□□□ 0.88
SHKBP1-223ENST00000600552 DNERQ8NFT8 737 aa20.54■□□□□ 0.88
SHKBP1-223ENST00000600552 HERVK_113Q902F9 699 aa20.54■□□□□ 0.88
SHKBP1-223ENST00000600552 KRT23Q9C075 422 aa20.54■□□□□ 0.88
SHKBP1-223ENST00000600552 WNT8AQ9H1J5 351 aa20.54■□□□□ 0.88
SHKBP1-223ENST00000600552 NKX2-4Q9H2Z4 354 aa20.54■□□□□ 0.88
SHKBP1-223ENST00000600552 SUPT16HQ9Y5B9 1047 aaKnown RBP20.54■□□□□ 0.88
SHKBP1-223ENST00000600552 ABCB11O95342 1321 aa20.53■□□□□ 0.88
SHKBP1-223ENST00000600552 MYH6P13533 1939 aa20.53■□□□□ 0.88
SHKBP1-223ENST00000600552 LOC102724159A0A0B4J2E5 919 aa20.53■□□□□ 0.88
SHKBP1-223ENST00000600552 TTLL4Q14679 1199 aa20.53■□□□□ 0.88
SHKBP1-223ENST00000600552 PWP2Q15269 919 aaKnown RBP20.53■□□□□ 0.88
SHKBP1-223ENST00000600552 QRICH1Q2TAL8 776 aa20.53■□□□□ 0.88
SHKBP1-223ENST00000600552 ASPRV1Q53RT3 343 aa20.53■□□□□ 0.88
SHKBP1-223ENST00000600552 RPUSD2Q8IZ73 545 aaKnown RBP20.53■□□□□ 0.88
SHKBP1-223ENST00000600552 SEZ6LQ9BYH1 1024 aa20.53■□□□□ 0.88
SHKBP1-223ENST00000600552 PRDM12Q9H4Q4 367 aa20.53■□□□□ 0.88
SHKBP1-223ENST00000600552 LAMA4Q16363 1823 aa20.53■□□□□ 0.88
SHKBP1-223ENST00000600552 NKRFO15226 690 aaKnown RBP eCLIP20.52■□□□□ 0.88
SHKBP1-223ENST00000600552 ARIH2O95376 493 aa20.52■□□□□ 0.88
SHKBP1-223ENST00000600552 SUPT20HL2P0C7V6 817 aa20.52■□□□□ 0.88
SHKBP1-223ENST00000600552 RABGGTBP53611 331 aa20.52■□□□□ 0.88
SHKBP1-223ENST00000600552 IFIT1BQ5T764 474 aaKnown RBP20.52■□□□□ 0.88
SHKBP1-223ENST00000600552 RASIP1Q5U651 963 aa20.52■□□□□ 0.88
SHKBP1-223ENST00000600552 FBXO11Q86XK2 927 aa20.52■□□□□ 0.88
SHKBP1-223ENST00000600552 SYTL5Q8TDW5 730 aaPredicted RBP20.52■□□□□ 0.88
SHKBP1-223ENST00000600552 GAS2L1Q99501 681 aaPredicted RBP20.52■□□□□ 0.88
SHKBP1-223ENST00000600552 IL25Q9H293 177 aa20.52■□□□□ 0.88
SHKBP1-223ENST00000600552 CFBP00751 764 aa20.51■□□□□ 0.87
SHKBP1-223ENST00000600552 EIF2AK2P19525 551 aaKnown RBP20.51■□□□□ 0.87
SHKBP1-223ENST00000600552 IGFBP4P22692 258 aa20.51■□□□□ 0.87
SHKBP1-223ENST00000600552 EDNRBP24530 442 aa20.51■□□□□ 0.87
SHKBP1-223ENST00000600552 PDE4AP27815 886 aa20.51■□□□□ 0.87
SHKBP1-223ENST00000600552 LY6KQ17RY6 165 aa20.51■□□□□ 0.87
SHKBP1-223ENST00000600552 ARHGEF16Q5VV41 709 aa20.51■□□□□ 0.87
SHKBP1-223ENST00000600552 MCF2L2Q86YR7 1114 aa20.51■□□□□ 0.87
SHKBP1-223ENST00000600552 STAG2Q8N3U4 1231 aa20.51■□□□□ 0.87
SHKBP1-223ENST00000600552 ANKS1AQ92625 1134 aa20.51■□□□□ 0.87
SHKBP1-223ENST00000600552 RMDN3Q96TC7 470 aa20.51■□□□□ 0.87
SHKBP1-223ENST00000600552 CNNM2Q9H8M5 875 aa20.51■□□□□ 0.87
SHKBP1-223ENST00000600552 JMJD4Q9H9V9 463 aa20.51■□□□□ 0.87
SHKBP1-223ENST00000600552 COL20A1Q9P218 1284 aa20.51■□□□□ 0.87
SHKBP1-223ENST00000600552 NOD1Q9Y239 953 aa20.51■□□□□ 0.87
SHKBP1-223ENST00000600552 MRPL11Q9Y3B7 192 aaKnown RBP20.51■□□□□ 0.87
SHKBP1-223ENST00000600552 SLC4A7Q9Y6M7 1214 aa20.51■□□□□ 0.87
SHKBP1-223ENST00000600552 RAB30Q15771 203 aa20.5■□□□□ 0.87
SHKBP1-223ENST00000600552 CCDC85BQ15834 202 aaPredicted RBP20.5■□□□□ 0.87
SHKBP1-223ENST00000600552 CYB5R4Q7L1T6 521 aa20.5■□□□□ 0.87
SHKBP1-223ENST00000600552 USP38Q8NB14 1042 aa20.5■□□□□ 0.87
SHKBP1-223ENST00000600552 RETREG2Q8NC44 543 aa20.5■□□□□ 0.87
SHKBP1-223ENST00000600552 RGS22Q8NE09 1264 aa20.5■□□□□ 0.87
SHKBP1-223ENST00000600552 NSUN6Q8TEA1 469 aaKnown RBP20.5■□□□□ 0.87
SHKBP1-223ENST00000600552 AFG1LQ8WV93 481 aa20.5■□□□□ 0.87
SHKBP1-223ENST00000600552 SORBS3O60504 671 aa20.49■□□□□ 0.87
SHKBP1-223ENST00000600552 KPNA6O60684 536 aa20.49■□□□□ 0.87
SHKBP1-223ENST00000600552 MYOGP15173 224 aa20.49■□□□□ 0.87
SHKBP1-223ENST00000600552 TRDNQ13061 729 aa20.49■□□□□ 0.87
SHKBP1-223ENST00000600552 STXBP2Q15833 593 aa20.49■□□□□ 0.87
SHKBP1-223ENST00000600552 FTOQ9C0B1 505 aaKnown RBP eCLIP20.49■□□□□ 0.87
SHKBP1-223ENST00000600552 SLC28A3Q9HAS3 691 aa20.49■□□□□ 0.87
SHKBP1-223ENST00000600552 YBX2Q9Y2T7 364 aaKnown RBP20.49■□□□□ 0.87
SHKBP1-223ENST00000600552 SCN5AQ14524 2016 aa20.48■□□□□ 0.87
SHKBP1-223ENST00000600552 GBF1Q92538 1859 aa20.48■□□□□ 0.87
SHKBP1-223ENST00000600552 A6NJR5 290 aa20.48■□□□□ 0.87
SHKBP1-223ENST00000600552 KLRF2D3W0D1 207 aa20.48■□□□□ 0.87
SHKBP1-223ENST00000600552 GH1P01241 217 aa20.48■□□□□ 0.87
SHKBP1-223ENST00000600552 MYCLP12524 364 aaPredicted RBP20.48■□□□□ 0.87
SHKBP1-223ENST00000600552 GSPT1P15170 499 aaKnown RBP20.48■□□□□ 0.87
SHKBP1-223ENST00000600552 TTC22Q5TAA0 569 aa20.48■□□□□ 0.87
SHKBP1-223ENST00000600552 HOMER1Q86YM7 354 aa20.48■□□□□ 0.87
SHKBP1-223ENST00000600552 PRDM6Q9NQX0 595 aa20.48■□□□□ 0.87
SHKBP1-223ENST00000600552 UNC80Q8N2C7 3258 aa20.47■□□□□ 0.87
SHKBP1-223ENST00000600552 NT5C2P49902 561 aa20.47■□□□□ 0.87
SHKBP1-223ENST00000600552 AMNQ9BXJ7 453 aa20.47■□□□□ 0.87
SHKBP1-223ENST00000600552 IFIT3O14879 490 aaKnown RBP20.46■□□□□ 0.87
SHKBP1-223ENST00000600552 MMP3P08254 477 aa20.46■□□□□ 0.87
SHKBP1-223ENST00000600552 ATP2A2P16615 1042 aaKnown RBP20.46■□□□□ 0.87
SHKBP1-223ENST00000600552 PTH1RQ03431 593 aa20.46■□□□□ 0.87
SHKBP1-223ENST00000600552 NFRKBQ6P4R8 1299 aa20.46■□□□□ 0.87
SHKBP1-223ENST00000600552 CCDC62Q6P9F0 684 aa20.46■□□□□ 0.87
SHKBP1-223ENST00000600552 MICALL1Q8N3F8 863 aa20.46■□□□□ 0.87
SHKBP1-223ENST00000600552 PIBF1Q8WXW3 757 aa20.46■□□□□ 0.87
SHKBP1-223ENST00000600552 ZFP91Q96JP5 570 aaPredicted RBP20.46■□□□□ 0.87
SHKBP1-223ENST00000600552 IWS1Q96ST2 819 aa20.46■□□□□ 0.87
SHKBP1-223ENST00000600552 ALG1Q9BT22 464 aa20.46■□□□□ 0.87
SHKBP1-223ENST00000600552 PCDHA1Q9Y5I3 950 aa20.46■□□□□ 0.87
SHKBP1-223ENST00000600552 MRVI1Q9Y6F6 885 aa20.46■□□□□ 0.87
SHKBP1-223ENST00000600552 BAZ2BQ9UIF8 2168 aaKnown RBP20.45■□□□□ 0.86
SHKBP1-223ENST00000600552 SCN10AQ9Y5Y9 1956 aa20.45■□□□□ 0.86
SHKBP1-223ENST00000600552 NR3C2P08235 984 aa20.45■□□□□ 0.86
SHKBP1-223ENST00000600552 HOXA13P31271 388 aaPredicted RBP20.45■□□□□ 0.86
SHKBP1-223ENST00000600552 ARHGAP1Q07960 439 aa20.45■□□□□ 0.86
SHKBP1-223ENST00000600552 SEC23AQ15436 765 aa20.45■□□□□ 0.86
SHKBP1-223ENST00000600552 PTGISQ16647 500 aa20.45■□□□□ 0.86
SHKBP1-223ENST00000600552 PPP2R2DQ66LE6 453 aa20.45■□□□□ 0.86
SHKBP1-223ENST00000600552 RUFY2Q8WXA3 655 aa20.45■□□□□ 0.86
SHKBP1-223ENST00000600552 PXMP2Q9NR77 195 aa20.45■□□□□ 0.86
SHKBP1-223ENST00000600552 TRIP12Q14669 1992 aaPredicted RBP20.45■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 48.3 ms