RNA–Protein interactions for RNA: ENST00000597423.1

TRIM28-209, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-209ENST00000597423 NBR1Q14596 966 aa17.31■□□□□ 0.36
TRIM28-209ENST00000597423 XRRA1Q6P2D8 792 aa17.31■□□□□ 0.36
TRIM28-209ENST00000597423 ZNF579Q8NAF0 562 aaKnown RBP17.31■□□□□ 0.36
TRIM28-209ENST00000597423 SYTL5Q8TDW5 730 aaPredicted RBP17.31■□□□□ 0.36
TRIM28-209ENST00000597423 PGBD1Q96JS3 809 aa17.31■□□□□ 0.36
TRIM28-209ENST00000597423 MPHOSPH6Q99547 160 aaKnown RBP17.31■□□□□ 0.36
TRIM28-209ENST00000597423 MOV10L1Q9BXT6 1211 aaKnown RBP17.31■□□□□ 0.36
TRIM28-209ENST00000597423 PCDHA7Q9UN72 937 aa17.31■□□□□ 0.36
TRIM28-209ENST00000597423 SRPRBQ9Y5M8 271 aaKnown RBP17.31■□□□□ 0.36
TRIM28-209ENST00000597423 FAM155AB1AL88 458 aaPredicted RBP17.3■□□□□ 0.36
TRIM28-209ENST00000597423 CNMDO75829 334 aa17.3■□□□□ 0.36
TRIM28-209ENST00000597423 ALDH1A1P00352 501 aa17.3■□□□□ 0.36
TRIM28-209ENST00000597423 TAL1P17542 331 aaPredicted RBP17.3■□□□□ 0.36
TRIM28-209ENST00000597423 PTPREP23469 700 aa17.3■□□□□ 0.36
TRIM28-209ENST00000597423 MARCKSP29966 332 aaPredicted RBP17.3■□□□□ 0.36
TRIM28-209ENST00000597423 PRPHP41219 470 aa17.3■□□□□ 0.36
TRIM28-209ENST00000597423 ATP2C1P98194 919 aaPredicted RBP17.3■□□□□ 0.36
TRIM28-209ENST00000597423 ARHGEF16Q5VV41 709 aa17.3■□□□□ 0.36
TRIM28-209ENST00000597423 DTHD1Q6ZMT9 781 aa17.3■□□□□ 0.36
TRIM28-209ENST00000597423 IFNL1Q8IU54 200 aa17.3■□□□□ 0.36
TRIM28-209ENST00000597423 NSUN6Q8TEA1 469 aaKnown RBP17.3■□□□□ 0.36
TRIM28-209ENST00000597423 ZFYVE28Q9HCC9 887 aa17.3■□□□□ 0.36
TRIM28-209ENST00000597423 MORF4L1Q9UBU8 362 aa17.3■□□□□ 0.36
TRIM28-209ENST00000597423 DDX25Q9UHL0 483 aaKnown RBP17.3■□□□□ 0.36
TRIM28-209ENST00000597423 ERCC3P19447 782 aa17.29■□□□□ 0.36
TRIM28-209ENST00000597423 CMA1P23946 247 aa17.29■□□□□ 0.36
TRIM28-209ENST00000597423 CIITAP33076 1130 aa17.29■□□□□ 0.36
TRIM28-209ENST00000597423 KCTD2Q14681 263 aa17.29■□□□□ 0.36
TRIM28-209ENST00000597423 KLHL40Q2TBA0 621 aa17.29■□□□□ 0.36
TRIM28-209ENST00000597423 CCDC73Q6ZRK6 1079 aa17.29■□□□□ 0.36
TRIM28-209ENST00000597423 SYAP1Q96A49 352 aaPredicted RBP17.29■□□□□ 0.36
TRIM28-209ENST00000597423 RMDN3Q96TC7 470 aa17.29■□□□□ 0.36
TRIM28-209ENST00000597423 RAB34Q9BZG1 259 aa17.29■□□□□ 0.36
TRIM28-209ENST00000597423 FAM13BQ9NYF5 915 aa17.29■□□□□ 0.36
TRIM28-209ENST00000597423 CYP39A1Q9NYL5 469 aa17.29■□□□□ 0.36
TRIM28-209ENST00000597423 ADD3Q9UEY8 706 aaKnown RBP17.29■□□□□ 0.36
TRIM28-209ENST00000597423 RASSF10A6NK89 507 aa17.28■□□□□ 0.36
TRIM28-209ENST00000597423 STRNO43815 780 aa17.28■□□□□ 0.36
TRIM28-209ENST00000597423 GADD45BO75293 160 aaPredicted RBP17.28■□□□□ 0.36
TRIM28-209ENST00000597423 OR52Z1P0C646 297 aa17.28■□□□□ 0.36
TRIM28-209ENST00000597423 FCER1AP12319 257 aa17.28■□□□□ 0.36
TRIM28-209ENST00000597423 TAF1CQ15572 869 aaPredicted RBP17.28■□□□□ 0.36
TRIM28-209ENST00000597423 CALCRLQ16602 461 aa17.28■□□□□ 0.36
TRIM28-209ENST00000597423 TMEM266Q2M3C6 531 aa17.28■□□□□ 0.36
TRIM28-209ENST00000597423 Q3C1V9 767 aa17.28■□□□□ 0.36
TRIM28-209ENST00000597423 Q4G0T1 1027 aa17.28■□□□□ 0.36
TRIM28-209ENST00000597423 POTEEQ6S8J3 1075 aa17.28■□□□□ 0.36
TRIM28-209ENST00000597423 DHX30Q7L2E3 1194 aaKnown RBP eCLIP17.28■□□□□ 0.36
TRIM28-209ENST00000597423 SLFN12Q8IYM2 578 aa17.28■□□□□ 0.36
TRIM28-209ENST00000597423 ANKRD13CQ8N6S4 541 aa17.28■□□□□ 0.36
TRIM28-209ENST00000597423 C4orf32Q8N8J7 132 aa17.28■□□□□ 0.36
TRIM28-209ENST00000597423 DNERQ8NFT8 737 aa17.28■□□□□ 0.36
TRIM28-209ENST00000597423 IWS1Q96ST2 819 aa17.28■□□□□ 0.36
TRIM28-209ENST00000597423 TXNRD2Q9NNW7 524 aa17.28■□□□□ 0.36
TRIM28-209ENST00000597423 A1CFQ9NQ94 594 aaKnown RBP17.28■□□□□ 0.36
TRIM28-209ENST00000597423 PTPRFP10586 1907 aa17.27■□□□□ 0.36
TRIM28-209ENST00000597423 POTEB2H3BUK9 544 aa17.27■□□□□ 0.36
TRIM28-209ENST00000597423 TBX3O15119 743 aa17.27■□□□□ 0.36
TRIM28-209ENST00000597423 LONP1P36776 959 aaKnown RBP17.27■□□□□ 0.36
TRIM28-209ENST00000597423 GRM1Q13255 1194 aa17.27■□□□□ 0.36
TRIM28-209ENST00000597423 FAM110CQ1W6H9 321 aa17.27■□□□□ 0.36
TRIM28-209ENST00000597423 TPRNQ4KMQ1 711 aa17.27■□□□□ 0.36
TRIM28-209ENST00000597423 WDR78Q5VTH9 848 aa17.27■□□□□ 0.36
TRIM28-209ENST00000597423 CYP4F22Q6NT55 531 aa17.27■□□□□ 0.36
TRIM28-209ENST00000597423 CRYGNQ8WXF5 182 aa17.27■□□□□ 0.36
TRIM28-209ENST00000597423 MRPS27Q92552 414 aaKnown RBP17.27■□□□□ 0.36
TRIM28-209ENST00000597423 FAM20AQ96MK3 541 aa17.27■□□□□ 0.36
TRIM28-209ENST00000597423 MBOAT7Q96N66 472 aa17.27■□□□□ 0.36
TRIM28-209ENST00000597423 TAAR1Q96RJ0 339 aa17.27■□□□□ 0.36
TRIM28-209ENST00000597423 MMP19Q99542 508 aa17.27■□□□□ 0.36
TRIM28-209ENST00000597423 FBXO2Q9UK22 296 aaPredicted RBP17.27■□□□□ 0.36
TRIM28-209ENST00000597423 RPTORQ8N122 1335 aa17.26■□□□□ 0.35
TRIM28-209ENST00000597423 IGF2BP3O00425 579 aaKnown RBP eCLIP17.26■□□□□ 0.35
TRIM28-209ENST00000597423 STAM2O75886 525 aa17.26■□□□□ 0.35
TRIM28-209ENST00000597423 CCND2P30279 289 aa17.26■□□□□ 0.35
TRIM28-209ENST00000597423 MAPK4P31152 587 aa17.26■□□□□ 0.35
TRIM28-209ENST00000597423 CEP55Q53EZ4 464 aa17.26■□□□□ 0.35
TRIM28-209ENST00000597423 AXDND1Q5T1B0 1012 aaPredicted RBP17.26■□□□□ 0.35
TRIM28-209ENST00000597423 PCNX4Q63HM2 1172 aa17.26■□□□□ 0.35
TRIM28-209ENST00000597423 SLC30A10Q6XR72 485 aa17.26■□□□□ 0.35
TRIM28-209ENST00000597423 NIPA1Q7RTP0 329 aa17.26■□□□□ 0.35
TRIM28-209ENST00000597423 FSIP1Q8NA03 581 aa17.26■□□□□ 0.35
TRIM28-209ENST00000597423 CAPNS2Q96L46 248 aa17.26■□□□□ 0.35
TRIM28-209ENST00000597423 AK8Q96MA6 479 aa17.26■□□□□ 0.35
TRIM28-209ENST00000597423 PYM1Q9BRP8 204 aaKnown RBP17.26■□□□□ 0.35
TRIM28-209ENST00000597423 PXMP2Q9NR77 195 aa17.26■□□□□ 0.35
TRIM28-209ENST00000597423 IVNS1ABPQ9Y6Y0 642 aa17.26■□□□□ 0.35
TRIM28-209ENST00000597423 RLFQ13129 1914 aa17.25■□□□□ 0.35
TRIM28-209ENST00000597423 VWA3AA6NCI4 1184 aa17.25■□□□□ 0.35
TRIM28-209ENST00000597423 WNT7AO00755 349 aa17.25■□□□□ 0.35
TRIM28-209ENST00000597423 TDP2O95551 362 aa17.25■□□□□ 0.35
TRIM28-209ENST00000597423 TXLNAP40222 546 aa17.25■□□□□ 0.35
TRIM28-209ENST00000597423 SETQ01105 290 aaPredicted RBP17.25■□□□□ 0.35
TRIM28-209ENST00000597423 PDIA5Q14554 519 aa17.25■□□□□ 0.35
TRIM28-209ENST00000597423 PRR16Q569H4 304 aa17.25■□□□□ 0.35
TRIM28-209ENST00000597423 ABRAQ8N0Z2 381 aa17.25■□□□□ 0.35
TRIM28-209ENST00000597423 CCDC34Q96HJ3 373 aa17.25■□□□□ 0.35
TRIM28-209ENST00000597423 MTMR9Q96QG7 549 aa17.25■□□□□ 0.35
TRIM28-209ENST00000597423 COL20A1Q9P218 1284 aa17.25■□□□□ 0.35
TRIM28-209ENST00000597423 STK24Q9Y6E0 443 aa17.25■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms