RNA–Protein interactions for RNA: ENST00000596814.5

VRK3-212, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 1,736 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-212ENST00000596814 CRYGNQ8WXF5 182 aa16.67■□□□□ 0.26
VRK3-212ENST00000596814 NAP1L4Q99733 375 aaKnown RBP16.67■□□□□ 0.26
VRK3-212ENST00000596814 CYP39A1Q9NYL5 469 aa16.67■□□□□ 0.26
VRK3-212ENST00000596814 MORC2Q9Y6X9 1032 aaPredicted RBP16.67■□□□□ 0.26
VRK3-212ENST00000596814 PFASO15067 1338 aa16.66■□□□□ 0.26
VRK3-212ENST00000596814 EDIL3O43854 480 aa16.66■□□□□ 0.26
VRK3-212ENST00000596814 GADD45BO75293 160 aaPredicted RBP16.66■□□□□ 0.26
VRK3-212ENST00000596814 TDP2O95551 362 aa16.66■□□□□ 0.26
VRK3-212ENST00000596814 GCFC2P16383 781 aaKnown RBP16.66■□□□□ 0.26
VRK3-212ENST00000596814 MARCKSP29966 332 aaPredicted RBP16.66■□□□□ 0.26
VRK3-212ENST00000596814 TM4SF4P48230 202 aa16.66■□□□□ 0.26
VRK3-212ENST00000596814 USP11P51784 963 aa16.66■□□□□ 0.26
VRK3-212ENST00000596814 UBE2HP62256 183 aa16.66■□□□□ 0.26
VRK3-212ENST00000596814 ATP2C1P98194 919 aaPredicted RBP16.66■□□□□ 0.26
VRK3-212ENST00000596814 ANKRD35Q8N283 1001 aa16.66■□□□□ 0.26
VRK3-212ENST00000596814 ZIC5Q96T25 663 aa16.66■□□□□ 0.26
VRK3-212ENST00000596814 MROH8Q9H579 483 aa16.66■□□□□ 0.26
VRK3-212ENST00000596814 FRMPD4Q14CM0 1322 aa16.66■□□□□ 0.26
VRK3-212ENST00000596814 RPTORQ8N122 1335 aa16.66■□□□□ 0.26
VRK3-212ENST00000596814 ADGRA2Q96PE1 1338 aa16.66■□□□□ 0.26
VRK3-212ENST00000596814 GOLGA6L4A6NEF3 574 aa16.65■□□□□ 0.26
VRK3-212ENST00000596814 NEMFO60524 1076 aa16.65■□□□□ 0.26
VRK3-212ENST00000596814 PTGDRQ13258 359 aa16.65■□□□□ 0.26
VRK3-212ENST00000596814 FAM110CQ1W6H9 321 aa16.65■□□□□ 0.26
VRK3-212ENST00000596814 PPP4R3AQ6IN85 833 aa16.65■□□□□ 0.26
VRK3-212ENST00000596814 MOXD1Q6UVY6 613 aa16.65■□□□□ 0.26
VRK3-212ENST00000596814 DHX30Q7L2E3 1194 aaKnown RBP eCLIP16.65■□□□□ 0.26
VRK3-212ENST00000596814 PLXNB2O15031 1838 aa16.65■□□□□ 0.26
VRK3-212ENST00000596814 CYP3A4P08684 503 aa16.65■□□□□ 0.26
VRK3-212ENST00000596814 TAAR1Q96RJ0 339 aa16.65■□□□□ 0.26
VRK3-212ENST00000596814 DDX25Q9UHL0 483 aaKnown RBP16.65■□□□□ 0.26
VRK3-212ENST00000596814 PCDHA7Q9UN72 937 aa16.65■□□□□ 0.26
VRK3-212ENST00000596814 LAD1O00515 517 aa16.64■□□□□ 0.25
VRK3-212ENST00000596814 AOC2O75106 756 aa16.64■□□□□ 0.25
VRK3-212ENST00000596814 UBXN2AP68543 259 aa16.64■□□□□ 0.25
VRK3-212ENST00000596814 TPRNQ4KMQ1 711 aa16.64■□□□□ 0.25
VRK3-212ENST00000596814 WDR78Q5VTH9 848 aa16.64■□□□□ 0.25
VRK3-212ENST00000596814 POTEDQ86YR6 584 aa16.64■□□□□ 0.25
VRK3-212ENST00000596814 KRI1Q8N9T8 703 aaKnown RBP16.64■□□□□ 0.25
VRK3-212ENST00000596814 RMDN3Q96TC7 470 aa16.64■□□□□ 0.25
VRK3-212ENST00000596814 PORCNQ9H237 461 aa16.64■□□□□ 0.25
VRK3-212ENST00000596814 ZFYVE28Q9HCC9 887 aa16.64■□□□□ 0.25
VRK3-212ENST00000596814 MRVI1Q9Y6F6 885 aa16.64■□□□□ 0.25
VRK3-212ENST00000596814 CYP3A7-CYP3A51PA0A087WV96 503 aa16.63■□□□□ 0.25
VRK3-212ENST00000596814 SLC37A4O43826 429 aa16.63■□□□□ 0.25
VRK3-212ENST00000596814 EIF2AK2P19525 551 aaKnown RBP16.63■□□□□ 0.25
VRK3-212ENST00000596814 CYP3A7P24462 503 aa16.63■□□□□ 0.25
VRK3-212ENST00000596814 CIITAP33076 1130 aa16.63■□□□□ 0.25
VRK3-212ENST00000596814 ARHGEF16Q5VV41 709 aa16.63■□□□□ 0.25
VRK3-212ENST00000596814 ARL6IP4Q66PJ3 421 aaKnown RBP16.63■□□□□ 0.25
VRK3-212ENST00000596814 CCAR1Q8IX12 1150 aaKnown RBP16.63■□□□□ 0.25
VRK3-212ENST00000596814 C4orf32Q8N8J7 132 aa16.63■□□□□ 0.25
VRK3-212ENST00000596814 MBOAT7Q96N66 472 aa16.63■□□□□ 0.25
VRK3-212ENST00000596814 MMP19Q99542 508 aa16.63■□□□□ 0.25
VRK3-212ENST00000596814 TMEM60Q9H2L4 133 aa16.63■□□□□ 0.25
VRK3-212ENST00000596814 R3HDMLQ9H3Y0 253 aa16.63■□□□□ 0.25
VRK3-212ENST00000596814 EFCC1Q9HA90 598 aa16.63■□□□□ 0.25
VRK3-212ENST00000596814 PXMP2Q9NR77 195 aa16.63■□□□□ 0.25
VRK3-212ENST00000596814 CPA4Q9UI42 421 aa16.63■□□□□ 0.25
VRK3-212ENST00000596814 FBXO2Q9UK22 296 aaPredicted RBP16.63■□□□□ 0.25
VRK3-212ENST00000596814 SRPRBQ9Y5M8 271 aaKnown RBP16.63■□□□□ 0.25
VRK3-212ENST00000596814 CUTAO60888 179 aa16.62■□□□□ 0.25
VRK3-212ENST00000596814 MBD3O95983 291 aa16.62■□□□□ 0.25
VRK3-212ENST00000596814 OR52Z1P0C646 297 aa16.62■□□□□ 0.25
VRK3-212ENST00000596814 BCRP11274 1271 aa16.62■□□□□ 0.25
VRK3-212ENST00000596814 PTPREP23469 700 aa16.62■□□□□ 0.25
VRK3-212ENST00000596814 ZNF76P36508 570 aa16.62■□□□□ 0.25
VRK3-212ENST00000596814 KCTD2Q14681 263 aa16.62■□□□□ 0.25
VRK3-212ENST00000596814 CALCRLQ16602 461 aa16.62■□□□□ 0.25
VRK3-212ENST00000596814 ADALQ6DHV7 355 aa16.62■□□□□ 0.25
VRK3-212ENST00000596814 REM2Q8IYK8 340 aaPredicted RBP16.62■□□□□ 0.25
VRK3-212ENST00000596814 FERMT2Q96AC1 680 aa16.62■□□□□ 0.25
VRK3-212ENST00000596814 PURBQ96QR8 312 aaKnown RBP16.62■□□□□ 0.25
VRK3-212ENST00000596814 POTEB2H3BUK9 544 aa16.62■□□□□ 0.25
VRK3-212ENST00000596814 TLR2O60603 784 aa16.62■□□□□ 0.25
VRK3-212ENST00000596814 ALDH1A1P00352 501 aa16.62■□□□□ 0.25
VRK3-212ENST00000596814 FCER1AP12319 257 aa16.62■□□□□ 0.25
VRK3-212ENST00000596814 PGM5Q15124 567 aa16.62■□□□□ 0.25
VRK3-212ENST00000596814 AXDND1Q5T1B0 1012 aaPredicted RBP16.62■□□□□ 0.25
VRK3-212ENST00000596814 PCNX4Q63HM2 1172 aa16.62■□□□□ 0.25
VRK3-212ENST00000596814 IL31RAQ8NI17 732 aa16.62■□□□□ 0.25
VRK3-212ENST00000596814 NSUN6Q8TEA1 469 aaKnown RBP16.62■□□□□ 0.25
VRK3-212ENST00000596814 PDCD2LQ9BRP1 358 aa16.62■□□□□ 0.25
VRK3-212ENST00000596814 DDX49Q9Y6V7 483 aaKnown RBP16.62■□□□□ 0.25
VRK3-212ENST00000596814 ZNFX1Q9P2E3 1918 aaKnown RBP16.62■□□□□ 0.25
VRK3-212ENST00000596814 THSD7BQ9C0I4 1608 aa16.61■□□□□ 0.25
VRK3-212ENST00000596814 A0A1W2PQ27 194 aa16.61■□□□□ 0.25
VRK3-212ENST00000596814 A0A1W2PQ64 194 aa16.61■□□□□ 0.25
VRK3-212ENST00000596814 A0A1W2PQD8 194 aa16.61■□□□□ 0.25
VRK3-212ENST00000596814 FAM86B1E9PN63 330 aa16.61■□□□□ 0.25
VRK3-212ENST00000596814 FAM86B2P0C5J1 330 aa16.61■□□□□ 0.25
VRK3-212ENST00000596814 PRPHP41219 470 aa16.61■□□□□ 0.25
VRK3-212ENST00000596814 CRHR2Q13324 411 aa16.61■□□□□ 0.25
VRK3-212ENST00000596814 Q4G0T1 1027 aa16.61■□□□□ 0.25
VRK3-212ENST00000596814 PRR16Q569H4 304 aa16.61■□□□□ 0.25
VRK3-212ENST00000596814 DNERQ8NFT8 737 aa16.61■□□□□ 0.25
VRK3-212ENST00000596814 CLIC6Q96NY7 704 aa16.61■□□□□ 0.25
VRK3-212ENST00000596814 VWA3AA6NCI4 1184 aa16.6■□□□□ 0.25
VRK3-212ENST00000596814 CA12O43570 354 aa16.6■□□□□ 0.25
VRK3-212ENST00000596814 MAPK4P31152 587 aa16.6■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms