RNA–Protein interactions for RNA: ENST00000588410.1

TPM4-208, Transcript of tropomyosin 4, humanhuman

TSL 4

Gene TPM4, Length 563 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM4-208ENST00000588410 COL20A1Q9P218 1284 aa22.67■■□□□ 1.22
TPM4-208ENST00000588410 TLR3O15455 904 aaKnown RBP22.66■■□□□ 1.22
TPM4-208ENST00000588410 CALM1P0DP23 149 aa22.66■■□□□ 1.22
TPM4-208ENST00000588410 CALM2P0DP24 149 aa22.66■■□□□ 1.22
TPM4-208ENST00000588410 CALM3P0DP25 149 aa22.66■■□□□ 1.22
TPM4-208ENST00000588410 TXNP10599 105 aaKnown RBP22.66■■□□□ 1.22
TPM4-208ENST00000588410 LIFRP42702 1097 aa22.66■■□□□ 1.22
TPM4-208ENST00000588410 CPT1AP50416 773 aa22.66■■□□□ 1.22
TPM4-208ENST00000588410 HSD17B4P51659 736 aa22.66■■□□□ 1.22
TPM4-208ENST00000588410 TTLL4Q14679 1199 aa22.66■■□□□ 1.22
TPM4-208ENST00000588410 STXBP2Q15833 593 aa22.66■■□□□ 1.22
TPM4-208ENST00000588410 SLC35G1Q2M3R5 365 aa22.66■■□□□ 1.22
TPM4-208ENST00000588410 SAMD3Q8N6K7 520 aa22.66■■□□□ 1.22
TPM4-208ENST00000588410 RRP36Q96EU6 259 aaKnown RBP22.66■■□□□ 1.22
TPM4-208ENST00000588410 NEK1Q96PY6 1258 aa22.66■■□□□ 1.22
TPM4-208ENST00000588410 SLC12A7Q9Y666 1083 aa22.66■■□□□ 1.22
TPM4-208ENST00000588410 KIAA0355O15063 1070 aa22.65■■□□□ 1.22
TPM4-208ENST00000588410 CYTH3O43739 400 aa22.65■■□□□ 1.22
TPM4-208ENST00000588410 EIF2AK2P19525 551 aaKnown RBP22.65■■□□□ 1.22
TPM4-208ENST00000588410 CDK7P50613 346 aa22.65■■□□□ 1.22
TPM4-208ENST00000588410 FAAP100Q0VG06 881 aa22.65■■□□□ 1.22
TPM4-208ENST00000588410 SYNE3Q6ZMZ3 975 aa22.65■■□□□ 1.22
TPM4-208ENST00000588410 LRRC2Q9BYS8 371 aa22.65■■□□□ 1.22
TPM4-208ENST00000588410 POLR3EQ9NVU0 708 aa22.65■■□□□ 1.22
TPM4-208ENST00000588410 SEC63Q9UGP8 760 aaKnown RBP22.65■■□□□ 1.22
TPM4-208ENST00000588410 SMCHD1A6NHR9 2005 aa22.65■■□□□ 1.22
TPM4-208ENST00000588410 GCOM1H8Y6P7 765 aaPredicted RBP22.64■■□□□ 1.21
TPM4-208ENST00000588410 SOX1O00570 391 aaPredicted RBP22.64■■□□□ 1.21
TPM4-208ENST00000588410 OPLAHO14841 1288 aa22.64■■□□□ 1.21
TPM4-208ENST00000588410 POLR2MP0CAP2 368 aa22.64■■□□□ 1.21
TPM4-208ENST00000588410 ITGA7Q13683 1181 aa22.64■■□□□ 1.21
TPM4-208ENST00000588410 KRT32Q14532 448 aa22.64■■□□□ 1.21
TPM4-208ENST00000588410 LRIT3Q3SXY7 679 aa22.64■■□□□ 1.21
TPM4-208ENST00000588410 SEPT14Q6ZU15 432 aa22.64■■□□□ 1.21
TPM4-208ENST00000588410 SPZ1Q9BXG8 430 aa22.64■■□□□ 1.21
TPM4-208ENST00000588410 SEZ6LQ9BYH1 1024 aa22.64■■□□□ 1.21
TPM4-208ENST00000588410 PXMP2Q9NR77 195 aa22.64■■□□□ 1.21
TPM4-208ENST00000588410 TRIOBPQ9H2D6 2365 aa22.64■■□□□ 1.21
TPM4-208ENST00000588410 NR3C2P08235 984 aa22.63■■□□□ 1.21
TPM4-208ENST00000588410 MYL3P08590 195 aa22.63■■□□□ 1.21
TPM4-208ENST00000588410 SMARCA1P28370 1054 aa22.63■■□□□ 1.21
TPM4-208ENST00000588410 HOXA13P31271 388 aaPredicted RBP22.63■■□□□ 1.21
TPM4-208ENST00000588410 GHRHRQ02643 423 aa22.63■■□□□ 1.21
TPM4-208ENST00000588410 EIF3JO75822 258 aaKnown RBP22.62■■□□□ 1.21
TPM4-208ENST00000588410 RXRAP19793 462 aa22.62■■□□□ 1.21
TPM4-208ENST00000588410 COL9A3Q14050 684 aaPredicted RBP22.62■■□□□ 1.21
TPM4-208ENST00000588410 COPS5Q92905 334 aa22.62■■□□□ 1.21
TPM4-208ENST00000588410 LRCH3Q96II8 777 aa22.62■■□□□ 1.21
TPM4-208ENST00000588410 MYCLP12524 364 aaPredicted RBP22.61■■□□□ 1.21
TPM4-208ENST00000588410 ITGB8P26012 769 aa22.61■■□□□ 1.21
TPM4-208ENST00000588410 PSMC6P62333 389 aa22.61■■□□□ 1.21
TPM4-208ENST00000588410 TSGA10IPQ3SY00 556 aa22.61■■□□□ 1.21
TPM4-208ENST00000588410 DHX32Q7L7V1 743 aaKnown RBP22.61■■□□□ 1.21
TPM4-208ENST00000588410 FCHSD1Q86WN1 690 aa22.61■■□□□ 1.21
TPM4-208ENST00000588410 RAB11FIP4Q86YS3 637 aa22.61■■□□□ 1.21
TPM4-208ENST00000588410 FAM126BQ8IXS8 530 aa22.61■■□□□ 1.21
TPM4-208ENST00000588410 KPNA6O60684 536 aa22.6■■□□□ 1.21
TPM4-208ENST00000588410 ARIH2O95376 493 aa22.6■■□□□ 1.21
TPM4-208ENST00000588410 PLEKHA8P1O95397 391 aa22.6■■□□□ 1.21
TPM4-208ENST00000588410 TIMP1P01033 207 aa22.6■■□□□ 1.21
TPM4-208ENST00000588410 GH1P01241 217 aa22.6■■□□□ 1.21
TPM4-208ENST00000588410 HMGB1P09429 215 aaKnown RBP22.6■■□□□ 1.21
TPM4-208ENST00000588410 FPGSQ05932 587 aa22.6■■□□□ 1.21
TPM4-208ENST00000588410 SGMS1Q86VZ5 419 aa22.6■■□□□ 1.21
TPM4-208ENST00000588410 MICU3Q86XE3 530 aa22.6■■□□□ 1.21
TPM4-208ENST00000588410 RASEFQ8IZ41 740 aa22.6■■□□□ 1.21
TPM4-208ENST00000588410 SLC43A3Q8NBI5 491 aa22.6■■□□□ 1.21
TPM4-208ENST00000588410 PDCD2LQ9BRP1 358 aa22.6■■□□□ 1.21
TPM4-208ENST00000588410 MTG1Q9BT17 334 aaPredicted RBP22.6■■□□□ 1.21
TPM4-208ENST00000588410 TBX21Q9UL17 535 aa22.6■■□□□ 1.21
TPM4-208ENST00000588410 PURAQ00577 322 aaKnown RBP22.59■■□□□ 1.21
TPM4-208ENST00000588410 LY6KQ17RY6 165 aa22.59■■□□□ 1.21
TPM4-208ENST00000588410 CCDC62Q6P9F0 684 aa22.59■■□□□ 1.21
TPM4-208ENST00000588410 SRBD1Q8N5C6 995 aaKnown RBP22.59■■□□□ 1.21
TPM4-208ENST00000588410 FANCBQ8NB91 859 aa22.59■■□□□ 1.21
TPM4-208ENST00000588410 CUL5Q93034 780 aa22.59■■□□□ 1.21
TPM4-208ENST00000588410 MRVI1Q9Y6F6 885 aa22.59■■□□□ 1.21
TPM4-208ENST00000588410 MCM3APO60318 1980 aa22.59■■□□□ 1.21
TPM4-208ENST00000588410 LRRC37A2A6NM11 1700 aa22.59■■□□□ 1.21
TPM4-208ENST00000588410 A6NJR5 290 aa22.58■■□□□ 1.21
TPM4-208ENST00000588410 REC8O95072 547 aa22.58■■□□□ 1.21
TPM4-208ENST00000588410 CCND2P30279 289 aa22.58■■□□□ 1.21
TPM4-208ENST00000588410 FGD1P98174 961 aa22.58■■□□□ 1.21
TPM4-208ENST00000588410 EXOSC10Q01780 885 aaKnown RBP22.58■■□□□ 1.21
TPM4-208ENST00000588410 SHHQ15465 462 aa22.58■■□□□ 1.21
TPM4-208ENST00000588410 ADCK5Q3MIX3 580 aa22.58■■□□□ 1.21
TPM4-208ENST00000588410 CMTR1Q8N1G2 835 aaKnown RBP22.58■■□□□ 1.21
TPM4-208ENST00000588410 TCEANC2Q96MN5 208 aa22.58■■□□□ 1.21
TPM4-208ENST00000588410 RANBP2P49792 3224 aaKnown RBP22.58■■□□□ 1.2
TPM4-208ENST00000588410 CD4P01730 458 aa22.57■■□□□ 1.2
TPM4-208ENST00000588410 PGM5Q15124 567 aa22.57■■□□□ 1.2
TPM4-208ENST00000588410 CCDC82Q8N4S0 544 aa22.57■■□□□ 1.2
TPM4-208ENST00000588410 SMARCC2Q8TAQ2 1214 aa22.57■■□□□ 1.2
TPM4-208ENST00000588410 PPP1R12CQ9BZL4 782 aa22.57■■□□□ 1.2
TPM4-208ENST00000588410 PPP4R2Q9NY27 417 aa22.57■■□□□ 1.2
TPM4-208ENST00000588410 LCTP09848 1927 aa22.57■■□□□ 1.2
TPM4-208ENST00000588410 GRIN2DO15399 1336 aa22.57■■□□□ 1.2
TPM4-208ENST00000588410 CENPBP07199 599 aaPredicted RBP22.56■■□□□ 1.2
TPM4-208ENST00000588410 FAM47CQ5HY64 1035 aa22.56■■□□□ 1.2
TPM4-208ENST00000588410 C9orf50Q5SZB4 431 aa22.56■■□□□ 1.2
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms