RNA–Protein interactions for RNA: ENST00000586119.1

LIG3-207, Transcript of DNA ligase 3, humanhuman

TSL 3

Gene LIG3, Length 565 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-207ENST00000586119 CCDC171Q6TFL3 1326 aa13.65□□□□□ -0.22
LIG3-207ENST00000586119 TNFRSF10AO00220 468 aa13.65□□□□□ -0.22
LIG3-207ENST00000586119 IQCF3P0C7M6 154 aa13.65□□□□□ -0.22
LIG3-207ENST00000586119 ATP2A2P16615 1042 aaKnown RBP13.65□□□□□ -0.22
LIG3-207ENST00000586119 CPT1AP50416 773 aa13.65□□□□□ -0.22
LIG3-207ENST00000586119 HDAC1Q13547 482 aaPredicted RBP13.65□□□□□ -0.22
LIG3-207ENST00000586119 GPNMBQ14956 572 aa13.65□□□□□ -0.22
LIG3-207ENST00000586119 LY6KQ17RY6 165 aa13.65□□□□□ -0.22
LIG3-207ENST00000586119 PPP2R2DQ66LE6 453 aa13.65□□□□□ -0.22
LIG3-207ENST00000586119 TTC14Q96N46 770 aa13.65□□□□□ -0.22
LIG3-207ENST00000586119 NECAB3Q96P71 396 aaPredicted RBP13.65□□□□□ -0.22
LIG3-207ENST00000586119 SEZ6LQ9BYH1 1024 aa13.65□□□□□ -0.22
LIG3-207ENST00000586119 MTIF3Q9H2K0 278 aaKnown RBP13.65□□□□□ -0.22
LIG3-207ENST00000586119 GPHNQ9NQX3 736 aaPredicted RBP13.65□□□□□ -0.22
LIG3-207ENST00000586119 THEGQ9P2T0 379 aa13.65□□□□□ -0.22
LIG3-207ENST00000586119 PCDHA11Q9Y5I1 949 aa13.65□□□□□ -0.22
LIG3-207ENST00000586119 A6NJR5 290 aa13.64□□□□□ -0.23
LIG3-207ENST00000586119 IGHDP01880 384 aa13.64□□□□□ -0.23
LIG3-207ENST00000586119 CA3P07451 260 aa13.64□□□□□ -0.23
LIG3-207ENST00000586119 SUPT20HL2P0C7V6 817 aa13.64□□□□□ -0.23
LIG3-207ENST00000586119 SDSP20132 328 aa13.64□□□□□ -0.23
LIG3-207ENST00000586119 TFF2Q03403 129 aa13.64□□□□□ -0.23
LIG3-207ENST00000586119 PPP2R5BQ15173 497 aa13.64□□□□□ -0.23
LIG3-207ENST00000586119 SEPT14Q6ZU15 432 aa13.64□□□□□ -0.23
LIG3-207ENST00000586119 TMCO2Q7Z6W1 182 aaPredicted RBP13.64□□□□□ -0.23
LIG3-207ENST00000586119 ADAMTS19Q8TE59 1207 aa13.64□□□□□ -0.23
LIG3-207ENST00000586119 AFG1LQ8WV93 481 aa13.64□□□□□ -0.23
LIG3-207ENST00000586119 ATXN2LQ8WWM7 1075 aaKnown RBP13.64□□□□□ -0.23
LIG3-207ENST00000586119 CTAGE1Q96RT6 745 aa13.64□□□□□ -0.23
LIG3-207ENST00000586119 VAT1LQ9HCJ6 419 aa13.64□□□□□ -0.23
LIG3-207ENST00000586119 KIAA1217Q5T5P2 1943 aa13.64□□□□□ -0.23
LIG3-207ENST00000586119 MUC3AQ02505 3323 aa13.63□□□□□ -0.23
LIG3-207ENST00000586119 KDM4AO75164 1064 aa13.63□□□□□ -0.23
LIG3-207ENST00000586119 MRPS5P82675 430 aaKnown RBP13.63□□□□□ -0.23
LIG3-207ENST00000586119 CDC37Q16543 378 aaPredicted RBP13.63□□□□□ -0.23
LIG3-207ENST00000586119 TCTN1Q2MV58 587 aa13.63□□□□□ -0.23
LIG3-207ENST00000586119 CCDC62Q6P9F0 684 aa13.63□□□□□ -0.23
LIG3-207ENST00000586119 CHST3Q7LGC8 479 aa13.63□□□□□ -0.23
LIG3-207ENST00000586119 PLEKHM2Q8IWE5 1019 aa13.63□□□□□ -0.23
LIG3-207ENST00000586119 ADGRF4Q8IZF3 695 aa13.63□□□□□ -0.23
LIG3-207ENST00000586119 DNERQ8NFT8 737 aa13.63□□□□□ -0.23
LIG3-207ENST00000586119 SYTL5Q8TDW5 730 aaPredicted RBP13.63□□□□□ -0.23
LIG3-207ENST00000586119 SCFD2Q8WU76 684 aa13.63□□□□□ -0.23
LIG3-207ENST00000586119 KAT2BQ92831 832 aa13.63□□□□□ -0.23
LIG3-207ENST00000586119 WDR19Q8NEZ3 1342 aa13.63□□□□□ -0.23
LIG3-207ENST00000586119 BAZ2BQ9UIF8 2168 aaKnown RBP13.62□□□□□ -0.23
LIG3-207ENST00000586119 NCOR1O75376 2440 aa13.62□□□□□ -0.23
LIG3-207ENST00000586119 LOC102724159A0A0B4J2E5 919 aa13.62□□□□□ -0.23
LIG3-207ENST00000586119 B4E1Z4 1266 aa13.62□□□□□ -0.23
LIG3-207ENST00000586119 ZNF213O14771 459 aa13.62□□□□□ -0.23
LIG3-207ENST00000586119 CENPBP07199 599 aaPredicted RBP13.62□□□□□ -0.23
LIG3-207ENST00000586119 PWP2Q15269 919 aaKnown RBP13.62□□□□□ -0.23
LIG3-207ENST00000586119 TMEM67Q5HYA8 995 aa13.62□□□□□ -0.23
LIG3-207ENST00000586119 GDF6Q6KF10 455 aaPredicted RBP13.62□□□□□ -0.23
LIG3-207ENST00000586119 NFRKBQ6P4R8 1299 aa13.62□□□□□ -0.23
LIG3-207ENST00000586119 CWC27Q6UX04 472 aaKnown RBP13.62□□□□□ -0.23
LIG3-207ENST00000586119 DGKHQ86XP1 1220 aa13.62□□□□□ -0.23
LIG3-207ENST00000586119 RETREG2Q8NC44 543 aa13.62□□□□□ -0.23
LIG3-207ENST00000586119 PNMA1Q8ND90 353 aa13.62□□□□□ -0.23
LIG3-207ENST00000586119 DHX38Q92620 1227 aaKnown RBP13.62□□□□□ -0.23
LIG3-207ENST00000586119 ZFP91Q96JP5 570 aaPredicted RBP13.62□□□□□ -0.23
LIG3-207ENST00000586119 FTOQ9C0B1 505 aaKnown RBP eCLIP13.62□□□□□ -0.23
LIG3-207ENST00000586119 ZSWIM5Q9P217 1185 aa13.62□□□□□ -0.23
LIG3-207ENST00000586119 MTCH2Q9Y6C9 303 aa13.62□□□□□ -0.23
LIG3-207ENST00000586119 ZMYM6O95789 1325 aa13.62□□□□□ -0.23
LIG3-207ENST00000586119 NKRFO15226 690 aaKnown RBP eCLIP13.61□□□□□ -0.23
LIG3-207ENST00000586119 SORBS3O60504 671 aa13.61□□□□□ -0.23
LIG3-207ENST00000586119 MMP3P08254 477 aa13.61□□□□□ -0.23
LIG3-207ENST00000586119 BMP1P13497 986 aa13.61□□□□□ -0.23
LIG3-207ENST00000586119 COL9A1P20849 921 aa13.61□□□□□ -0.23
LIG3-207ENST00000586119 KCNQ1P51787 676 aa13.61□□□□□ -0.23
LIG3-207ENST00000586119 TAP1Q03518 808 aa13.61□□□□□ -0.23
LIG3-207ENST00000586119 ARHGAP1Q07960 439 aa13.61□□□□□ -0.23
LIG3-207ENST00000586119 PTGISQ16647 500 aa13.61□□□□□ -0.23
LIG3-207ENST00000586119 QRICH1Q2TAL8 776 aa13.61□□□□□ -0.23
LIG3-207ENST00000586119 ARNTL2Q8WYA1 636 aa13.61□□□□□ -0.23
LIG3-207ENST00000586119 ESR2Q92731 530 aa13.61□□□□□ -0.23
LIG3-207ENST00000586119 UHRF1Q96T88 793 aaPredicted RBP13.61□□□□□ -0.23
LIG3-207ENST00000586119 IL25Q9H293 177 aa13.61□□□□□ -0.23
LIG3-207ENST00000586119 TANC1Q9C0D5 1861 aa13.61□□□□□ -0.23
LIG3-207ENST00000586119 LCHNA4D1U4 455 aa13.6□□□□□ -0.23
LIG3-207ENST00000586119 KPNA6O60684 536 aa13.6□□□□□ -0.23
LIG3-207ENST00000586119 PFKMP08237 780 aa13.6□□□□□ -0.23
LIG3-207ENST00000586119 EIF2AK2P19525 551 aaKnown RBP13.6□□□□□ -0.23
LIG3-207ENST00000586119 ZNF200P98182 395 aaPredicted RBP13.6□□□□□ -0.23
LIG3-207ENST00000586119 BRDTQ58F21 947 aaPredicted RBP13.6□□□□□ -0.23
LIG3-207ENST00000586119 GPATCH4Q5T3I0 446 aaKnown RBP13.6□□□□□ -0.23
LIG3-207ENST00000586119 HERC6Q8IVU3 1022 aa13.6□□□□□ -0.23
LIG3-207ENST00000586119 SMC5Q8IY18 1101 aa13.6□□□□□ -0.23
LIG3-207ENST00000586119 STAG2Q8N3U4 1231 aa13.6□□□□□ -0.23
LIG3-207ENST00000586119 ENAHQ8N8S7 591 aaPredicted RBP13.6□□□□□ -0.23
LIG3-207ENST00000586119 RGS22Q8NE09 1264 aa13.6□□□□□ -0.23
LIG3-207ENST00000586119 ANKS1AQ92625 1134 aa13.6□□□□□ -0.23
LIG3-207ENST00000586119 WNT8BQ93098 351 aa13.6□□□□□ -0.23
LIG3-207ENST00000586119 ALG1Q9BT22 464 aa13.6□□□□□ -0.23
LIG3-207ENST00000586119 JMJD4Q9H9V9 463 aa13.6□□□□□ -0.23
LIG3-207ENST00000586119 PITPNM1O00562 1244 aa13.59□□□□□ -0.23
LIG3-207ENST00000586119 OPLAHO14841 1288 aa13.59□□□□□ -0.23
LIG3-207ENST00000586119 GH1P01241 217 aa13.59□□□□□ -0.23
LIG3-207ENST00000586119 PCP11498 1178 aaKnown RBP13.59□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms