RNA–Protein interactions for RNA: ENST00000585031.2

TOP3A-220, Transcript of DNA topoisomerase III alpha, humanhuman

TSL 4

Gene TOP3A, Length 575 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOP3A-220ENST00000585031 TTBK2Q6IQ55 1244 aa21.47■■□□□ 1.03
TOP3A-220ENST00000585031 SEC62Q99442 399 aaKnown RBP21.47■■□□□ 1.03
TOP3A-220ENST00000585031 GRXCR2A6NFK2 248 aa21.46■■□□□ 1.03
TOP3A-220ENST00000585031 A6NJR5 290 aa21.46■■□□□ 1.03
TOP3A-220ENST00000585031 PATL2C9JE40 543 aaKnown RBP21.46■■□□□ 1.03
TOP3A-220ENST00000585031 APPP05067 770 aa21.46■■□□□ 1.03
TOP3A-220ENST00000585031 DHX38Q92620 1227 aaKnown RBP21.46■■□□□ 1.03
TOP3A-220ENST00000585031 ZNF318Q5VUA4 2279 aa21.45■■□□□ 1.02
TOP3A-220ENST00000585031 USP34Q70CQ2 3546 aa21.45■■□□□ 1.02
TOP3A-220ENST00000585031 ICAM1P05362 532 aa21.45■■□□□ 1.02
TOP3A-220ENST00000585031 SSTR3P32745 418 aaPredicted RBP21.45■■□□□ 1.02
TOP3A-220ENST00000585031 SLC16A2P36021 539 aa21.45■■□□□ 1.02
TOP3A-220ENST00000585031 ERVK-21P61565 698 aa21.45■■□□□ 1.02
TOP3A-220ENST00000585031 CSPP1Q1MSJ5 1256 aa21.45■■□□□ 1.02
TOP3A-220ENST00000585031 SLC30A10Q6XR72 485 aa21.45■■□□□ 1.02
TOP3A-220ENST00000585031 ANKS1AQ92625 1134 aa21.45■■□□□ 1.02
TOP3A-220ENST00000585031 RANBP17Q9H2T7 1088 aaKnown RBP21.45■■□□□ 1.02
TOP3A-220ENST00000585031 ZNF287Q9HBT7 754 aa21.45■■□□□ 1.02
TOP3A-220ENST00000585031 GPHNQ9NQX3 736 aaPredicted RBP21.45■■□□□ 1.02
TOP3A-220ENST00000585031 MTMR7Q9Y216 660 aa21.45■■□□□ 1.02
TOP3A-220ENST00000585031 MYO7AQ13402 2215 aa21.45■■□□□ 1.02
TOP3A-220ENST00000585031 LINC01553A4QN01 128 aa21.44■■□□□ 1.02
TOP3A-220ENST00000585031 ARIH2O95376 493 aa21.44■■□□□ 1.02
TOP3A-220ENST00000585031 KCNA5P22460 613 aa21.44■■□□□ 1.02
TOP3A-220ENST00000585031 BFSP2Q13515 415 aa21.44■■□□□ 1.02
TOP3A-220ENST00000585031 PTCRAQ6ISU1 281 aaPredicted RBP21.44■■□□□ 1.02
TOP3A-220ENST00000585031 GDF6Q6KF10 455 aaPredicted RBP21.44■■□□□ 1.02
TOP3A-220ENST00000585031 CLEC4DQ8WXI8 215 aa21.44■■□□□ 1.02
TOP3A-220ENST00000585031 DCXO43602 365 aa21.43■■□□□ 1.02
TOP3A-220ENST00000585031 NBNO60934 754 aa21.43■■□□□ 1.02
TOP3A-220ENST00000585031 KCNJ6P48051 423 aa21.43■■□□□ 1.02
TOP3A-220ENST00000585031 CHMP4BP1P59074 171 aa21.43■■□□□ 1.02
TOP3A-220ENST00000585031 HNRNPUQ00839 825 aaKnown RBP eCLIP21.43■■□□□ 1.02
TOP3A-220ENST00000585031 PTPN11Q06124 597 aaPredicted RBP21.43■■□□□ 1.02
TOP3A-220ENST00000585031 PTGISQ16647 500 aa21.43■■□□□ 1.02
TOP3A-220ENST00000585031 ECHDC1Q9NTX5 307 aa21.43■■□□□ 1.02
TOP3A-220ENST00000585031 ADD3Q9UEY8 706 aaKnown RBP21.43■■□□□ 1.02
TOP3A-220ENST00000585031 STX8Q9UNK0 236 aa21.43■■□□□ 1.02
TOP3A-220ENST00000585031 DDX52Q9Y2R4 599 aaKnown RBP eCLIP21.43■■□□□ 1.02
TOP3A-220ENST00000585031 PTPDC1A2A3K4 754 aa21.42■■□□□ 1.02
TOP3A-220ENST00000585031 FOXP2O15409 715 aa21.42■■□□□ 1.02
TOP3A-220ENST00000585031 GJB5O95377 273 aa21.42■■□□□ 1.02
TOP3A-220ENST00000585031 GNAT2P19087 354 aa21.42■■□□□ 1.02
TOP3A-220ENST00000585031 EDNRBP24530 442 aa21.42■■□□□ 1.02
TOP3A-220ENST00000585031 PPARAQ07869 468 aa21.42■■□□□ 1.02
TOP3A-220ENST00000585031 PUS10Q3MIT2 529 aaKnown RBP21.42■■□□□ 1.02
TOP3A-220ENST00000585031 NEK9Q8TD19 979 aa21.42■■□□□ 1.02
TOP3A-220ENST00000585031 TGS1Q96RS0 853 aaKnown RBP21.42■■□□□ 1.02
TOP3A-220ENST00000585031 RAD9AQ99638 391 aa21.42■■□□□ 1.02
TOP3A-220ENST00000585031 ZBED2Q9BTP6 218 aa21.42■■□□□ 1.02
TOP3A-220ENST00000585031 LRRCC1Q9C099 1032 aa21.42■■□□□ 1.02
TOP3A-220ENST00000585031 CXCL10P02778 98 aa21.41■■□□□ 1.02
TOP3A-220ENST00000585031 CALML3P27482 149 aa21.41■■□□□ 1.02
TOP3A-220ENST00000585031 CTDSPL2Q05D32 466 aa21.41■■□□□ 1.02
TOP3A-220ENST00000585031 PDE4BQ07343 736 aa21.41■■□□□ 1.02
TOP3A-220ENST00000585031 LRRFIP1Q32MZ4 808 aaKnown RBP21.41■■□□□ 1.02
TOP3A-220ENST00000585031 FAM117BQ6P1L5 589 aa21.41■■□□□ 1.02
TOP3A-220ENST00000585031 KAT2BQ92831 832 aa21.41■■□□□ 1.02
TOP3A-220ENST00000585031 ATG2AQ2TAZ0 1938 aa21.4■■□□□ 1.02
TOP3A-220ENST00000585031 NOVP48745 357 aa21.4■■□□□ 1.02
TOP3A-220ENST00000585031 PPP2R5BQ15173 497 aa21.4■■□□□ 1.02
TOP3A-220ENST00000585031 TRAF7Q6Q0C0 670 aa21.4■■□□□ 1.02
TOP3A-220ENST00000585031 BTNL9Q6UXG8 535 aa21.4■■□□□ 1.02
TOP3A-220ENST00000585031 AFAP1L1Q8TED9 768 aa21.4■■□□□ 1.02
TOP3A-220ENST00000585031 C17orf80Q9BSJ5 609 aa21.4■■□□□ 1.02
TOP3A-220ENST00000585031 NOD1Q9Y239 953 aa21.4■■□□□ 1.02
TOP3A-220ENST00000585031 MICAL3Q7RTP6 2002 aa21.39■■□□□ 1.02
TOP3A-220ENST00000585031 KIAA1217Q5T5P2 1943 aa21.39■■□□□ 1.02
TOP3A-220ENST00000585031 LOC102724159A0A0B4J2E5 919 aa21.39■■□□□ 1.01
TOP3A-220ENST00000585031 NKRFO15226 690 aaKnown RBP eCLIP21.39■■□□□ 1.01
TOP3A-220ENST00000585031 KPNA6O60684 536 aa21.39■■□□□ 1.01
TOP3A-220ENST00000585031 TXNP10599 105 aaKnown RBP21.39■■□□□ 1.01
TOP3A-220ENST00000585031 SELPP16109 830 aa21.39■■□□□ 1.01
TOP3A-220ENST00000585031 MBTPS1Q14703 1052 aa21.39■■□□□ 1.01
TOP3A-220ENST00000585031 PWP2Q15269 919 aaKnown RBP21.39■■□□□ 1.01
TOP3A-220ENST00000585031 CNKSR3Q6P9H4 555 aa21.39■■□□□ 1.01
TOP3A-220ENST00000585031 LRRC8DQ7L1W4 858 aa21.39■■□□□ 1.01
TOP3A-220ENST00000585031 WNT8BQ93098 351 aa21.39■■□□□ 1.01
TOP3A-220ENST00000585031 MYH7BA7E2Y1 1941 aa21.39■■□□□ 1.01
TOP3A-220ENST00000585031 C19orf67A6NJJ6 358 aa21.38■■□□□ 1.01
TOP3A-220ENST00000585031 CKBP12277 381 aa21.38■■□□□ 1.01
TOP3A-220ENST00000585031 RPS6P62753 249 aaKnown RBP21.38■■□□□ 1.01
TOP3A-220ENST00000585031 PDE4DQ08499 809 aa21.38■■□□□ 1.01
TOP3A-220ENST00000585031 CCDC96Q2M329 555 aa21.38■■□□□ 1.01
TOP3A-220ENST00000585031 SYDE2Q5VT97 1194 aa21.38■■□□□ 1.01
TOP3A-220ENST00000585031 CCDC62Q6P9F0 684 aa21.38■■□□□ 1.01
TOP3A-220ENST00000585031 HFE2Q6ZVN8 426 aa21.38■■□□□ 1.01
TOP3A-220ENST00000585031 CAGE1Q8TC20 777 aa21.38■■□□□ 1.01
TOP3A-220ENST00000585031 SCFD2Q8WU76 684 aa21.38■■□□□ 1.01
TOP3A-220ENST00000585031 AFG1LQ8WV93 481 aa21.38■■□□□ 1.01
TOP3A-220ENST00000585031 CFAP54Q96N23 3096 aa21.37■■□□□ 1.01
TOP3A-220ENST00000585031 FRMPD2Q68DX3 1309 aaPredicted RBP21.37■■□□□ 1.01
TOP3A-220ENST00000585031 H3BQ06 376 aaPredicted RBP21.37■■□□□ 1.01
TOP3A-220ENST00000585031 RBL2Q08999 1139 aa21.37■■□□□ 1.01
TOP3A-220ENST00000585031 BRDTQ58F21 947 aaPredicted RBP21.37■■□□□ 1.01
TOP3A-220ENST00000585031 LIN28BQ6ZN17 250 aaKnown RBP eCLIP21.37■■□□□ 1.01
TOP3A-220ENST00000585031 RNF207Q6ZRF8 634 aa21.37■■□□□ 1.01
TOP3A-220ENST00000585031 SESTD1Q86VW0 696 aa21.37■■□□□ 1.01
TOP3A-220ENST00000585031 NAPBQ9H115 298 aa21.37■■□□□ 1.01
TOP3A-220ENST00000585031 GPCPD1Q9NPB8 672 aa21.37■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms