RNA–Protein interactions for RNA: ENST00000577085.1

SF3B3-215, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 4

Gene SF3B3, Length 529 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-215ENST00000577085 LCTP09848 1927 aa17.98■□□□□ 0.47
SF3B3-215ENST00000577085 PTGS1P23219 599 aa17.98■□□□□ 0.47
SF3B3-215ENST00000577085 ITGA7Q13683 1181 aa17.98■□□□□ 0.47
SF3B3-215ENST00000577085 SEPT14Q6ZU15 432 aa17.98■□□□□ 0.47
SF3B3-215ENST00000577085 PIBF1Q8WXW3 757 aa17.98■□□□□ 0.47
SF3B3-215ENST00000577085 MTMR8Q96EF0 704 aa17.98■□□□□ 0.47
SF3B3-215ENST00000577085 SEZ6LQ9BYH1 1024 aa17.98■□□□□ 0.47
SF3B3-215ENST00000577085 LY9Q9HBG7 655 aa17.98■□□□□ 0.47
SF3B3-215ENST00000577085 POLR3EQ9NVU0 708 aa17.98■□□□□ 0.47
SF3B3-215ENST00000577085 MAP3K20Q9NYL2 800 aaKnown RBP17.98■□□□□ 0.47
SF3B3-215ENST00000577085 SEC63Q9UGP8 760 aaKnown RBP17.98■□□□□ 0.47
SF3B3-215ENST00000577085 PNMA6FA0A0J9YX94 578 aa17.97■□□□□ 0.47
SF3B3-215ENST00000577085 RBM47A0AV96 593 aaKnown RBP17.97■□□□□ 0.47
SF3B3-215ENST00000577085 MYL3P08590 195 aa17.97■□□□□ 0.47
SF3B3-215ENST00000577085 CALM1P0DP23 149 aa17.97■□□□□ 0.47
SF3B3-215ENST00000577085 CALM2P0DP24 149 aa17.97■□□□□ 0.47
SF3B3-215ENST00000577085 CALM3P0DP25 149 aa17.97■□□□□ 0.47
SF3B3-215ENST00000577085 EIF2AK2P19525 551 aaKnown RBP17.97■□□□□ 0.47
SF3B3-215ENST00000577085 CDK7P50613 346 aa17.97■□□□□ 0.47
SF3B3-215ENST00000577085 FPGSQ05932 587 aa17.97■□□□□ 0.47
SF3B3-215ENST00000577085 NECTIN1Q15223 517 aa17.97■□□□□ 0.47
SF3B3-215ENST00000577085 TMEM63BQ5T3F8 832 aa17.97■□□□□ 0.47
SF3B3-215ENST00000577085 SYNE3Q6ZMZ3 975 aa17.97■□□□□ 0.47
SF3B3-215ENST00000577085 RRP36Q96EU6 259 aaKnown RBP17.97■□□□□ 0.47
SF3B3-215ENST00000577085 MAP3K14Q99558 947 aa17.97■□□□□ 0.47
SF3B3-215ENST00000577085 LZTS2Q9BRK4 669 aa17.97■□□□□ 0.47
SF3B3-215ENST00000577085 MYL10Q9BUA6 226 aa17.97■□□□□ 0.47
SF3B3-215ENST00000577085 RIOX1Q9H6W3 641 aa17.97■□□□□ 0.47
SF3B3-215ENST00000577085 COL20A1Q9P218 1284 aa17.97■□□□□ 0.47
SF3B3-215ENST00000577085 SLC12A7Q9Y666 1083 aa17.97■□□□□ 0.47
SF3B3-215ENST00000577085 MYH6P13533 1939 aa17.96■□□□□ 0.47
SF3B3-215ENST00000577085 LTBP2Q14767 1821 aa17.96■□□□□ 0.47
SF3B3-215ENST00000577085 GCOM1H8Y6P7 765 aaPredicted RBP17.96■□□□□ 0.47
SF3B3-215ENST00000577085 SH2B2O14492 632 aaPredicted RBP17.96■□□□□ 0.47
SF3B3-215ENST00000577085 PPP1R11O60927 126 aaPredicted RBP17.96■□□□□ 0.47
SF3B3-215ENST00000577085 TIMP1P01033 207 aa17.96■□□□□ 0.47
SF3B3-215ENST00000577085 POLR2MP0CAP2 368 aa17.96■□□□□ 0.47
SF3B3-215ENST00000577085 GNAQP50148 359 aa17.96■□□□□ 0.47
SF3B3-215ENST00000577085 SAMD3Q8N6K7 520 aa17.96■□□□□ 0.47
SF3B3-215ENST00000577085 PXMP2Q9NR77 195 aa17.96■□□□□ 0.47
SF3B3-215ENST00000577085 KPNA6O60684 536 aa17.95■□□□□ 0.46
SF3B3-215ENST00000577085 EIF3JO75822 258 aaKnown RBP17.95■□□□□ 0.46
SF3B3-215ENST00000577085 HOXA13P31271 388 aaPredicted RBP17.95■□□□□ 0.46
SF3B3-215ENST00000577085 HSD17B4P51659 736 aa17.95■□□□□ 0.46
SF3B3-215ENST00000577085 PSMC6P62333 389 aa17.95■□□□□ 0.46
SF3B3-215ENST00000577085 SHHQ15465 462 aa17.95■□□□□ 0.46
SF3B3-215ENST00000577085 GPR153Q6NV75 609 aa17.95■□□□□ 0.46
SF3B3-215ENST00000577085 FAM126BQ8IXS8 530 aa17.95■□□□□ 0.46
SF3B3-215ENST00000577085 MTG1Q9BT17 334 aaPredicted RBP17.95■□□□□ 0.46
SF3B3-215ENST00000577085 CYTH3O43739 400 aa17.94■□□□□ 0.46
SF3B3-215ENST00000577085 NR3C2P08235 984 aa17.94■□□□□ 0.46
SF3B3-215ENST00000577085 MYCLP12524 364 aaPredicted RBP17.94■□□□□ 0.46
SF3B3-215ENST00000577085 ITGB8P26012 769 aa17.94■□□□□ 0.46
SF3B3-215ENST00000577085 LIFRP42702 1097 aa17.94■□□□□ 0.46
SF3B3-215ENST00000577085 FCHSD1Q86WN1 690 aa17.94■□□□□ 0.46
SF3B3-215ENST00000577085 TMEM199Q8N511 208 aa17.94■□□□□ 0.46
SF3B3-215ENST00000577085 NEK1Q96PY6 1258 aa17.94■□□□□ 0.46
SF3B3-215ENST00000577085 SPZ1Q9BXG8 430 aa17.94■□□□□ 0.46
SF3B3-215ENST00000577085 LRRC2Q9BYS8 371 aa17.94■□□□□ 0.46
SF3B3-215ENST00000577085 PPP1R12CQ9BZL4 782 aa17.94■□□□□ 0.46
SF3B3-215ENST00000577085 TBX21Q9UL17 535 aa17.94■□□□□ 0.46
SF3B3-215ENST00000577085 MRVI1Q9Y6F6 885 aa17.94■□□□□ 0.46
SF3B3-215ENST00000577085 GH1P01241 217 aa17.93■□□□□ 0.46
SF3B3-215ENST00000577085 CHMP4BP1P59074 171 aa17.93■□□□□ 0.46
SF3B3-215ENST00000577085 FGD1P98174 961 aa17.93■□□□□ 0.46
SF3B3-215ENST00000577085 PURAQ00577 322 aaKnown RBP17.93■□□□□ 0.46
SF3B3-215ENST00000577085 KRT32Q14532 448 aa17.93■□□□□ 0.46
SF3B3-215ENST00000577085 FAM47CQ5HY64 1035 aa17.93■□□□□ 0.46
SF3B3-215ENST00000577085 C9orf50Q5SZB4 431 aa17.93■□□□□ 0.46
SF3B3-215ENST00000577085 MFSD5Q6N075 450 aa17.93■□□□□ 0.46
SF3B3-215ENST00000577085 DEFB123Q8N688 67 aa17.93■□□□□ 0.46
SF3B3-215ENST00000577085 COPS5Q92905 334 aa17.93■□□□□ 0.46
SF3B3-215ENST00000577085 CUL5Q93034 780 aa17.93■□□□□ 0.46
SF3B3-215ENST00000577085 RNPC3Q96LT9 517 aaKnown RBP17.93■□□□□ 0.46
SF3B3-215ENST00000577085 OPLAHO14841 1288 aa17.92■□□□□ 0.46
SF3B3-215ENST00000577085 RXRAP19793 462 aa17.92■□□□□ 0.46
SF3B3-215ENST00000577085 SMARCA1P28370 1054 aa17.92■□□□□ 0.46
SF3B3-215ENST00000577085 PPIGQ13427 754 aaKnown RBP eCLIP17.92■□□□□ 0.467e-10■□□□□ 8.5
SF3B3-215ENST00000577085 LY6KQ17RY6 165 aa17.92■□□□□ 0.46
SF3B3-215ENST00000577085 SLC43A3Q8NBI5 491 aa17.92■□□□□ 0.46
SF3B3-215ENST00000577085 HIPK3Q9H422 1215 aa17.92■□□□□ 0.46
SF3B3-215ENST00000577085 LAMA3Q16787 3333 aa17.92■□□□□ 0.46
SF3B3-215ENST00000577085 A6NJR5 290 aa17.91■□□□□ 0.46
SF3B3-215ENST00000577085 B4GALT4O60513 344 aa17.91■□□□□ 0.46
SF3B3-215ENST00000577085 ARIH2O95376 493 aa17.91■□□□□ 0.46
SF3B3-215ENST00000577085 CD4P01730 458 aa17.91■□□□□ 0.46
SF3B3-215ENST00000577085 HMGB1P09429 215 aaKnown RBP17.91■□□□□ 0.46
SF3B3-215ENST00000577085 SUPT20HL2P0C7V6 817 aa17.91■□□□□ 0.46
SF3B3-215ENST00000577085 CCND2P30279 289 aa17.91■□□□□ 0.46
SF3B3-215ENST00000577085 GHRHRQ02643 423 aa17.91■□□□□ 0.46
SF3B3-215ENST00000577085 SLC35G1Q2M3R5 365 aa17.91■□□□□ 0.46
SF3B3-215ENST00000577085 KCNV1Q6PIU1 500 aa17.91■□□□□ 0.46
SF3B3-215ENST00000577085 MICU3Q86XE3 530 aa17.91■□□□□ 0.46
SF3B3-215ENST00000577085 RAB11FIP4Q86YS3 637 aa17.91■□□□□ 0.46
SF3B3-215ENST00000577085 SMARCC2Q8TAQ2 1214 aa17.91■□□□□ 0.46
SF3B3-215ENST00000577085 PDCD2LQ9BRP1 358 aa17.91■□□□□ 0.46
SF3B3-215ENST00000577085 TRPV6Q9H1D0 765 aa17.91■□□□□ 0.46
SF3B3-215ENST00000577085 SZT2Q5T011 3432 aa17.9■□□□□ 0.46
SF3B3-215ENST00000577085 PLEKHA8P1O95397 391 aa17.9■□□□□ 0.46
SF3B3-215ENST00000577085 PGM5Q15124 567 aa17.9■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms