RNA–Protein interactions for RNA: ENST00000574428.5

ATPAF1-213, Transcript of ATP synthase mitochondrial F1 complex assembly factor 1, humanhuman

TSL 1 (best) BASIC

Gene ATPAF1, Length 1,760 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATPAF1-213ENST00000574428 GADD45BO75293 160 aaPredicted RBP27.35■■□□□ 1.97
ATPAF1-213ENST00000574428 TDP2O95551 362 aa27.35■■□□□ 1.97
ATPAF1-213ENST00000574428 MARCKSP29966 332 aaPredicted RBP27.35■■□□□ 1.97
ATPAF1-213ENST00000574428 COPB2P35606 906 aa27.35■■□□□ 1.97
ATPAF1-213ENST00000574428 ANKRD35Q8N283 1001 aa27.35■■□□□ 1.97
ATPAF1-213ENST00000574428 KCNG4Q8TDN1 519 aa27.35■■□□□ 1.97
ATPAF1-213ENST00000574428 CRYGNQ8WXF5 182 aa27.35■■□□□ 1.97
ATPAF1-213ENST00000574428 CPA4Q9UI42 421 aa27.35■■□□□ 1.97
ATPAF1-213ENST00000574428 CEP131Q9UPN4 1083 aa27.35■■□□□ 1.97
ATPAF1-213ENST00000574428 WDR78Q5VTH9 848 aa27.35■■□□□ 1.97
ATPAF1-213ENST00000574428 TAAR1Q96RJ0 339 aa27.35■■□□□ 1.97
ATPAF1-213ENST00000574428 ME1P48163 572 aa27.34■■□□□ 1.97
ATPAF1-213ENST00000574428 PTGDRQ13258 359 aa27.34■■□□□ 1.97
ATPAF1-213ENST00000574428 MROH8Q9H579 483 aa27.34■■□□□ 1.97
ATPAF1-213ENST00000574428 EHMT1Q9H9B1 1298 aa27.34■■□□□ 1.97
ATPAF1-213ENST00000574428 EFCC1Q9HA90 598 aa27.34■■□□□ 1.97
ATPAF1-213ENST00000574428 CCNA1P78396 465 aa27.33■■□□□ 1.97
ATPAF1-213ENST00000574428 FAM110CQ1W6H9 321 aa27.33■■□□□ 1.97
ATPAF1-213ENST00000574428 SHCBP1Q8NEM2 672 aa27.33■■□□□ 1.97
ATPAF1-213ENST00000574428 USP11P51784 963 aa27.32■■□□□ 1.96
ATPAF1-213ENST00000574428 PFASO15067 1338 aa27.32■■□□□ 1.96
ATPAF1-213ENST00000574428 RPTORQ8N122 1335 aa27.32■■□□□ 1.96
ATPAF1-213ENST00000574428 SLC37A4O43826 429 aa27.32■■□□□ 1.96
ATPAF1-213ENST00000574428 BMP15O95972 392 aa27.32■■□□□ 1.96
ATPAF1-213ENST00000574428 RMDN3Q96TC7 470 aa27.32■■□□□ 1.96
ATPAF1-213ENST00000574428 PCDHA7Q9UN72 937 aa27.32■■□□□ 1.96
ATPAF1-213ENST00000574428 EIF2AK2P19525 551 aaKnown RBP27.31■■□□□ 1.96
ATPAF1-213ENST00000574428 ATP2C1P98194 919 aaPredicted RBP27.31■■□□□ 1.96
ATPAF1-213ENST00000574428 CRHR2Q13324 411 aa27.31■■□□□ 1.96
ATPAF1-213ENST00000574428 PPP4R3AQ6IN85 833 aa27.31■■□□□ 1.96
ATPAF1-213ENST00000574428 C4orf32Q8N8J7 132 aa27.31■■□□□ 1.96
ATPAF1-213ENST00000574428 IL31RAQ8NI17 732 aa27.31■■□□□ 1.96
ATPAF1-213ENST00000574428 MAF1Q9H063 256 aa27.31■■□□□ 1.96
ATPAF1-213ENST00000574428 TMEM60Q9H2L4 133 aa27.31■■□□□ 1.96
ATPAF1-213ENST00000574428 ZFYVE28Q9HCC9 887 aa27.31■■□□□ 1.96
ATPAF1-213ENST00000574428 LCTP09848 1927 aa27.3■■□□□ 1.96
ATPAF1-213ENST00000574428 NEMFO60524 1076 aa27.3■■□□□ 1.96
ATPAF1-213ENST00000574428 PPP6R2O75170 966 aa27.3■■□□□ 1.96
ATPAF1-213ENST00000574428 POTEDQ86YR6 584 aa27.3■■□□□ 1.96
ATPAF1-213ENST00000574428 MMP19Q99542 508 aa27.3■■□□□ 1.96
ATPAF1-213ENST00000574428 PXMP2Q9NR77 195 aa27.3■■□□□ 1.96
ATPAF1-213ENST00000574428 DDX25Q9UHL0 483 aaKnown RBP27.3■■□□□ 1.96
ATPAF1-213ENST00000574428 FRMPD4Q14CM0 1322 aa27.3■■□□□ 1.96
ATPAF1-213ENST00000574428 TLR2O60603 784 aa27.3■■□□□ 1.96
ATPAF1-213ENST00000574428 CYP3A4P08684 503 aa27.3■■□□□ 1.96
ATPAF1-213ENST00000574428 BCRP11274 1271 aa27.3■■□□□ 1.96
ATPAF1-213ENST00000574428 VEGFBP49765 207 aa27.3■■□□□ 1.96
ATPAF1-213ENST00000574428 CNTN2Q02246 1040 aa27.3■■□□□ 1.96
ATPAF1-213ENST00000574428 ARHGEF16Q5VV41 709 aa27.3■■□□□ 1.96
ATPAF1-213ENST00000574428 CCAR1Q8IX12 1150 aaKnown RBP27.3■■□□□ 1.96
ATPAF1-213ENST00000574428 JMYQ8N9B5 988 aa27.3■■□□□ 1.96
ATPAF1-213ENST00000574428 ZFP91Q96JP5 570 aaPredicted RBP27.3■■□□□ 1.96
ATPAF1-213ENST00000574428 GCFC2P16383 781 aaKnown RBP27.29■■□□□ 1.96
ATPAF1-213ENST00000574428 ORC2Q13416 577 aaPredicted RBP27.29■■□□□ 1.96
ATPAF1-213ENST00000574428 KCTD2Q14681 263 aa27.29■■□□□ 1.96
ATPAF1-213ENST00000574428 DHX30Q7L2E3 1194 aaKnown RBP eCLIP27.29■■□□□ 1.96
ATPAF1-213ENST00000574428 NAP1L4Q99733 375 aaKnown RBP27.29■■□□□ 1.96
ATPAF1-213ENST00000574428 FBXO2Q9UK22 296 aaPredicted RBP27.29■■□□□ 1.96
ATPAF1-213ENST00000574428 FAM86B1E9PN63 330 aa27.28■■□□□ 1.96
ATPAF1-213ENST00000574428 FAM86B2P0C5J1 330 aa27.28■■□□□ 1.96
ATPAF1-213ENST00000574428 FCER1AP12319 257 aa27.28■■□□□ 1.96
ATPAF1-213ENST00000574428 ZNF76P36508 570 aa27.28■■□□□ 1.96
ATPAF1-213ENST00000574428 UBE2HP62256 183 aa27.28■■□□□ 1.96
ATPAF1-213ENST00000574428 CYP3A7-CYP3A51PA0A087WV96 503 aa27.27■■□□□ 1.96
ATPAF1-213ENST00000574428 GOLGA6L4A6NEF3 574 aa27.27■■□□□ 1.96
ATPAF1-213ENST00000574428 POTEB2H3BUK9 544 aa27.27■■□□□ 1.96
ATPAF1-213ENST00000574428 CYP3A7P24462 503 aa27.27■■□□□ 1.96
ATPAF1-213ENST00000574428 GRIN1Q05586 938 aa27.27■■□□□ 1.96
ATPAF1-213ENST00000574428 PGM5Q15124 567 aa27.27■■□□□ 1.96
ATPAF1-213ENST00000574428 C17orf99Q6UX52 265 aa27.27■■□□□ 1.96
ATPAF1-213ENST00000574428 KRI1Q8N9T8 703 aaKnown RBP27.27■■□□□ 1.96
ATPAF1-213ENST00000574428 CYP2W1Q8TAV3 490 aa27.27■■□□□ 1.96
ATPAF1-213ENST00000574428 CLIC6Q96NY7 704 aa27.27■■□□□ 1.96
ATPAF1-213ENST00000574428 PDCD2LQ9BRP1 358 aa27.27■■□□□ 1.96
ATPAF1-213ENST00000574428 CA12O43570 354 aa27.27■■□□□ 1.96
ATPAF1-213ENST00000574428 PGK2P07205 417 aa27.27■■□□□ 1.96
ATPAF1-213ENST00000574428 CIITAP33076 1130 aa27.27■■□□□ 1.96
ATPAF1-213ENST00000574428 PRR16Q569H4 304 aa27.27■■□□□ 1.96
ATPAF1-213ENST00000574428 AXDND1Q5T1B0 1012 aaPredicted RBP27.27■■□□□ 1.96
ATPAF1-213ENST00000574428 MOXD1Q6UVY6 613 aa27.27■■□□□ 1.96
ATPAF1-213ENST00000574428 NSUN6Q8TEA1 469 aaKnown RBP27.27■■□□□ 1.96
ATPAF1-213ENST00000574428 MBOAT7Q96N66 472 aa27.27■■□□□ 1.96
ATPAF1-213ENST00000574428 MORC2Q9Y6X9 1032 aaPredicted RBP27.27■■□□□ 1.96
ATPAF1-213ENST00000574428 ASTN1O14525 1302 aa27.26■■□□□ 1.95
ATPAF1-213ENST00000574428 ALDH1A1P00352 501 aa27.26■■□□□ 1.95
ATPAF1-213ENST00000574428 PTMSP20962 102 aa27.26■■□□□ 1.95
ATPAF1-213ENST00000574428 PTPREP23469 700 aa27.26■■□□□ 1.95
ATPAF1-213ENST00000574428 CALCRLQ16602 461 aa27.26■■□□□ 1.95
ATPAF1-213ENST00000574428 PCNX4Q63HM2 1172 aa27.26■■□□□ 1.95
ATPAF1-213ENST00000574428 REM2Q8IYK8 340 aaPredicted RBP27.26■■□□□ 1.95
ATPAF1-213ENST00000574428 SRPRBQ9Y5M8 271 aaKnown RBP27.26■■□□□ 1.95
ATPAF1-213ENST00000574428 DDX49Q9Y6V7 483 aaKnown RBP27.26■■□□□ 1.95
ATPAF1-213ENST00000574428 PLXNB2O15031 1838 aa27.25■■□□□ 1.95
ATPAF1-213ENST00000574428 ECM2O94769 699 aaPredicted RBP27.25■■□□□ 1.95
ATPAF1-213ENST00000574428 OR52Z1P0C646 297 aa27.25■■□□□ 1.95
ATPAF1-213ENST00000574428 IL17AQ16552 155 aa27.25■■□□□ 1.95
ATPAF1-213ENST00000574428 LENG9Q96B70 501 aa27.25■■□□□ 1.95
ATPAF1-213ENST00000574428 LAD1O00515 517 aa27.25■■□□□ 1.95
ATPAF1-213ENST00000574428 MYCLP12524 364 aaPredicted RBP27.25■■□□□ 1.95
ATPAF1-213ENST00000574428 FAM133AQ8N9E0 248 aa27.25■■□□□ 1.95
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms