RNA–Protein interactions for RNA: ENST00000568642.5

VPS35-209, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-209ENST00000568642 GRIK4Q16099 956 aa3.66□□□□□ -1.82
VPS35-209ENST00000568642 FXNQ16595 210 aa3.66□□□□□ -1.82
VPS35-209ENST00000568642 RTN1Q16799 776 aa3.66□□□□□ -1.82
VPS35-209ENST00000568642 C8orf34Q49A92 452 aa3.66□□□□□ -1.82
VPS35-209ENST00000568642 SEZ6Q53EL9 994 aa3.66□□□□□ -1.82
VPS35-209ENST00000568642 FNDC3BQ53EP0 1204 aaKnown RBP3.66□□□□□ -1.82
VPS35-209ENST00000568642 PRRT3Q5FWE3 981 aa3.66□□□□□ -1.82
VPS35-209ENST00000568642 AXDND1Q5T1B0 1012 aaPredicted RBP3.66□□□□□ -1.82
VPS35-209ENST00000568642 ANO1Q5XXA6 986 aa3.66□□□□□ -1.82
VPS35-209ENST00000568642 C6orf15Q6UXA7 325 aaPredicted RBP3.66□□□□□ -1.82
VPS35-209ENST00000568642 LDHAL6AQ6ZMR3 332 aa3.66□□□□□ -1.82
VPS35-209ENST00000568642 BNC2Q6ZN30 1099 aaPredicted RBP3.66□□□□□ -1.82
VPS35-209ENST00000568642 AGMOQ6ZNB7 445 aa3.66□□□□□ -1.82
VPS35-209ENST00000568642 LRRC69Q6ZNQ3 347 aa3.66□□□□□ -1.82
VPS35-209ENST00000568642 MMS22LQ6ZRQ5 1243 aa3.66□□□□□ -1.82
VPS35-209ENST00000568642 EEPD1Q7L9B9 569 aa3.66□□□□□ -1.82
VPS35-209ENST00000568642 FAM178BQ8IXR5 827 aa3.66□□□□□ -1.82
VPS35-209ENST00000568642 IFNL2Q8IZJ0 200 aa3.66□□□□□ -1.82
VPS35-209ENST00000568642 CPXCR1Q8N123 301 aa3.66□□□□□ -1.82
VPS35-209ENST00000568642 VPS37AQ8NEZ2 397 aa3.66□□□□□ -1.82
VPS35-209ENST00000568642 CPLX3Q8WVH0 158 aa3.66□□□□□ -1.82
VPS35-209ENST00000568642 RSPH1Q8WYR4 309 aa3.66□□□□□ -1.82
VPS35-209ENST00000568642 TMEM87BQ96K49 555 aa3.66□□□□□ -1.82
VPS35-209ENST00000568642 GPR101Q96P66 508 aaPredicted RBP3.66□□□□□ -1.82
VPS35-209ENST00000568642 P2RX7Q99572 595 aaKnown RBP3.66□□□□□ -1.82
VPS35-209ENST00000568642 KIF2CQ99661 725 aa3.66□□□□□ -1.82
VPS35-209ENST00000568642 TRIM39Q9HCM9 518 aa3.66□□□□□ -1.82
VPS35-209ENST00000568642 KMT5AQ9NQR1 393 aa3.66□□□□□ -1.82
VPS35-209ENST00000568642 SMYD2Q9NRG4 433 aa3.66□□□□□ -1.82
VPS35-209ENST00000568642 STRN4Q9NRL3 753 aa3.66□□□□□ -1.82
VPS35-209ENST00000568642 AASDHPPTQ9NRN7 309 aa3.66□□□□□ -1.82
VPS35-209ENST00000568642 PCMTD2Q9NV79 361 aa3.66□□□□□ -1.82
VPS35-209ENST00000568642 TMEM63CQ9P1W3 806 aa3.66□□□□□ -1.82
VPS35-209ENST00000568642 FRMD4BQ9Y2L6 1034 aa3.66□□□□□ -1.82
VPS35-209ENST00000568642 MORC2Q9Y6X9 1032 aaPredicted RBP3.66□□□□□ -1.82
VPS35-209ENST00000568642 CLIP1P30622 1438 aa3.66□□□□□ -1.82
VPS35-209ENST00000568642 IGSF1Q8N6C5 1336 aa3.66□□□□□ -1.82
VPS35-209ENST00000568642 N4BP2Q86UW6 1770 aaPredicted RBP3.66□□□□□ -1.82
VPS35-209ENST00000568642 ARFGEF1Q9Y6D6 1849 aa3.65□□□□□ -1.82
VPS35-209ENST00000568642 DUOX2Q9NRD8 1548 aa3.65□□□□□ -1.82
VPS35-209ENST00000568642 OVOS2A0A0G2JMS6 1433 aa3.65□□□□□ -1.83
VPS35-209ENST00000568642 OVOS2A0A0J9YW53 1432 aa3.65□□□□□ -1.83
VPS35-209ENST00000568642 OVOS2Q6IE36 1432 aa3.65□□□□□ -1.83
VPS35-209ENST00000568642 EREGO14944 169 aa3.65□□□□□ -1.83
VPS35-209ENST00000568642 PMM2O15305 246 aa3.65□□□□□ -1.83
VPS35-209ENST00000568642 FBXO24O75426 580 aa3.65□□□□□ -1.83
VPS35-209ENST00000568642 IL2RAP01589 272 aa3.65□□□□□ -1.83
VPS35-209ENST00000568642 ASGR2P07307 311 aa3.65□□□□□ -1.83
VPS35-209ENST00000568642 CT47B1P0C2W7 299 aaPredicted RBP3.65□□□□□ -1.83
VPS35-209ENST00000568642 NCAM1P13591 858 aa3.65□□□□□ -1.83
VPS35-209ENST00000568642 CCNFP41002 786 aa3.65□□□□□ -1.83
VPS35-209ENST00000568642 TM4SF4P48230 202 aa3.65□□□□□ -1.83
VPS35-209ENST00000568642 ERVK-21P61565 698 aa3.65□□□□□ -1.83
VPS35-209ENST00000568642 ITKQ08881 620 aa3.65□□□□□ -1.83
VPS35-209ENST00000568642 PWP1Q13610 501 aa3.65□□□□□ -1.83
VPS35-209ENST00000568642 ODF1Q14990 250 aa3.65□□□□□ -1.83
VPS35-209ENST00000568642 CCDC85BQ15834 202 aaPredicted RBP3.65□□□□□ -1.83
VPS35-209ENST00000568642 PPP2R5EQ16537 467 aa3.65□□□□□ -1.83
VPS35-209ENST00000568642 CDC37Q16543 378 aaPredicted RBP3.65□□□□□ -1.83
VPS35-209ENST00000568642 MAP3K11Q16584 847 aa3.65□□□□□ -1.83
VPS35-209ENST00000568642 SLC10A6Q3KNW5 377 aa3.65□□□□□ -1.83
VPS35-209ENST00000568642 ATP13A4Q4VNC1 1196 aa3.65□□□□□ -1.83
VPS35-209ENST00000568642 WDR44Q5JSH3 913 aa3.65□□□□□ -1.83
VPS35-209ENST00000568642 WDR45BQ5MNZ6 344 aa3.65□□□□□ -1.83
VPS35-209ENST00000568642 L1TD1Q5T7N2 865 aaKnown RBP3.65□□□□□ -1.83
VPS35-209ENST00000568642 SYDE2Q5VT97 1194 aa3.65□□□□□ -1.83
VPS35-209ENST00000568642 YOD1Q5VVQ6 348 aaPredicted RBP3.65□□□□□ -1.83
VPS35-209ENST00000568642 KIAA1614Q5VZ46 1190 aa3.65□□□□□ -1.83
VPS35-209ENST00000568642 DUSP27Q5VZP5 1158 aa3.65□□□□□ -1.83
VPS35-209ENST00000568642 RNF219Q5W0B1 726 aaPredicted RBP3.65□□□□□ -1.83
VPS35-209ENST00000568642 SLC6A19Q695T7 634 aa3.65□□□□□ -1.83
VPS35-209ENST00000568642 PLBD1Q6P4A8 553 aa3.65□□□□□ -1.83
VPS35-209ENST00000568642 PKN3Q6P5Z2 889 aa3.65□□□□□ -1.83
VPS35-209ENST00000568642 SYDE1Q6ZW31 735 aaPredicted RBP3.65□□□□□ -1.83
VPS35-209ENST00000568642 SV2BQ7L1I2 683 aa3.65□□□□□ -1.83
VPS35-209ENST00000568642 CHST15Q7LFX5 561 aaPredicted RBP3.65□□□□□ -1.83
VPS35-209ENST00000568642 FAM43AQ8N2R8 423 aa3.65□□□□□ -1.83
VPS35-209ENST00000568642 CNTD1Q8N815 330 aa3.65□□□□□ -1.83
VPS35-209ENST00000568642 WDR66Q8TBY9 1149 aa3.65□□□□□ -1.83
VPS35-209ENST00000568642 PARD3BQ8TEW8 1205 aa3.65□□□□□ -1.83
VPS35-209ENST00000568642 MTMR8Q96EF0 704 aa3.65□□□□□ -1.83
VPS35-209ENST00000568642 DHRS4Q9BTZ2 278 aa3.65□□□□□ -1.83
VPS35-209ENST00000568642 DDX24Q9GZR7 859 aaKnown RBP eCLIP3.65□□□□□ -1.83
VPS35-209ENST00000568642 PUS7LQ9H0K6 701 aaKnown RBP3.65□□□□□ -1.83
VPS35-209ENST00000568642 RUBCNLQ9H714 662 aa3.65□□□□□ -1.83
VPS35-209ENST00000568642 ABCB6Q9NP58 842 aa3.65□□□□□ -1.83
VPS35-209ENST00000568642 ALG13Q9NP73 1137 aaKnown RBP3.65□□□□□ -1.83
VPS35-209ENST00000568642 UTP3Q9NQZ2 479 aaKnown RBP eCLIP3.65□□□□□ -1.83
VPS35-209ENST00000568642 PDLIM7Q9NR12 457 aa3.65□□□□□ -1.83
VPS35-209ENST00000568642 CWC25Q9NXE8 425 aaPredicted RBP3.65□□□□□ -1.83
VPS35-209ENST00000568642 ZFATQ9P243 1243 aa3.65□□□□□ -1.83
VPS35-209ENST00000568642 GJD2Q9UKL4 321 aa3.65□□□□□ -1.83
VPS35-209ENST00000568642 KCNMB2Q9Y691 235 aa3.65□□□□□ -1.83
VPS35-209ENST00000568642 RANBP2P49792 3224 aaKnown RBP3.65□□□□□ -1.83
VPS35-209ENST00000568642 TRANK1O15050 2925 aa3.65□□□□□ -1.83
VPS35-209ENST00000568642 LAMA2P24043 3122 aaKnown RBP3.65□□□□□ -1.83
VPS35-209ENST00000568642 SETXQ7Z333 2677 aaKnown RBP3.64□□□□□ -1.83
VPS35-209ENST00000568642 BRCA2P51587 3418 aa3.64□□□□□ -1.83
VPS35-209ENST00000568642 PHRF1Q9P1Y6 1649 aaKnown RBP3.64□□□□□ -1.83
VPS35-209ENST00000568642 A0A1W2PP55 124 aa3.64□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms