RNA–Protein interactions for RNA: ENST00000566824.6

CLN3-225, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,326 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-225ENST00000566824 DNERQ8NFT8 737 aa22.51■■□□□ 1.19
CLN3-225ENST00000566824 ZFP91Q96JP5 570 aaPredicted RBP22.51■■□□□ 1.19
CLN3-225ENST00000566824 PXMP2Q9NR77 195 aa22.51■■□□□ 1.19
CLN3-225ENST00000566824 PDGFCQ9NRA1 345 aa22.51■■□□□ 1.19
CLN3-225ENST00000566824 VPS54Q9P1Q0 977 aa22.51■■□□□ 1.19
CLN3-225ENST00000566824 ADD3Q9UEY8 706 aaKnown RBP22.51■■□□□ 1.19
CLN3-225ENST00000566824 ZHX1Q9UKY1 873 aaPredicted RBP22.51■■□□□ 1.19
CLN3-225ENST00000566824 KIAA1217Q5T5P2 1943 aa22.5■■□□□ 1.19
CLN3-225ENST00000566824 AKAP17AQ02040 695 aaKnown RBP22.5■■□□□ 1.19
CLN3-225ENST00000566824 U2AF1L4Q8WU68 220 aaKnown RBP22.5■■□□□ 1.19
CLN3-225ENST00000566824 TMEM106CQ9BVX2 250 aa22.5■■□□□ 1.19
CLN3-225ENST00000566824 GJB4Q9NTQ9 266 aa22.5■■□□□ 1.19
CLN3-225ENST00000566824 CNPY2Q9Y2B0 182 aa22.5■■□□□ 1.19
CLN3-225ENST00000566824 SMCO2A6NFE2 343 aa22.49■■□□□ 1.19
CLN3-225ENST00000566824 PIK3CDO00329 1044 aa22.49■■□□□ 1.19
CLN3-225ENST00000566824 ARHGEF16Q5VV41 709 aa22.49■■□□□ 1.19
CLN3-225ENST00000566824 TAPT1Q6NXT6 567 aa22.49■■□□□ 1.19
CLN3-225ENST00000566824 PPP1R18Q6NYC8 613 aa22.49■■□□□ 1.19
CLN3-225ENST00000566824 TRIM22Q8IYM9 498 aa22.49■■□□□ 1.19
CLN3-225ENST00000566824 SAMD3Q8N6K7 520 aa22.49■■□□□ 1.19
CLN3-225ENST00000566824 NSUN6Q8TEA1 469 aaKnown RBP22.49■■□□□ 1.19
CLN3-225ENST00000566824 RIC8AQ9NPQ8 531 aa22.49■■□□□ 1.19
CLN3-225ENST00000566824 TMEM260Q9NX78 707 aa22.49■■□□□ 1.19
CLN3-225ENST00000566824 MAP3K20Q9NYL2 800 aaKnown RBP22.49■■□□□ 1.19
CLN3-225ENST00000566824 C11orf97A0A1B0GVM6 126 aaPredicted RBP22.48■■□□□ 1.19
CLN3-225ENST00000566824 hCG_1984214I3L0E3 225 aa22.48■■□□□ 1.19
CLN3-225ENST00000566824 SEPT4O43236 478 aa22.48■■□□□ 1.19
CLN3-225ENST00000566824 SGPL1O95470 568 aa22.48■■□□□ 1.19
CLN3-225ENST00000566824 GJA8P48165 433 aa22.48■■□□□ 1.19
CLN3-225ENST00000566824 ADCY7P51828 1080 aa22.48■■□□□ 1.19
CLN3-225ENST00000566824 CPLX2Q6PUV4 134 aaKnown RBP22.48■■□□□ 1.19
CLN3-225ENST00000566824 ZNF713Q8N859 430 aaPredicted RBP22.48■■□□□ 1.19
CLN3-225ENST00000566824 SMARCC2Q8TAQ2 1214 aa22.48■■□□□ 1.19
CLN3-225ENST00000566824 PGBD1Q96JS3 809 aa22.48■■□□□ 1.19
CLN3-225ENST00000566824 PDCD2LQ9BRP1 358 aa22.48■■□□□ 1.19
CLN3-225ENST00000566824 ABHD16BQ9H3Z7 469 aa22.48■■□□□ 1.19
CLN3-225ENST00000566824 RBM27Q9P2N5 1060 aaKnown RBP22.48■■□□□ 1.19
CLN3-225ENST00000566824 DDX20Q9UHI6 824 aaKnown RBP22.48■■□□□ 1.19
CLN3-225ENST00000566824 NRBP1Q9UHY1 535 aa22.48■■□□□ 1.19
CLN3-225ENST00000566824 ST18O60284 1047 aa22.47■■□□□ 1.19
CLN3-225ENST00000566824 DEXIO95424 95 aa22.47■■□□□ 1.19
CLN3-225ENST00000566824 NR3C2P08235 984 aa22.47■■□□□ 1.19
CLN3-225ENST00000566824 ADCYAP1R1P41586 468 aa22.47■■□□□ 1.19
CLN3-225ENST00000566824 IRX5P78411 483 aaPredicted RBP22.47■■□□□ 1.19
CLN3-225ENST00000566824 PDE4DQ08499 809 aa22.47■■□□□ 1.19
CLN3-225ENST00000566824 PGM5Q15124 567 aa22.47■■□□□ 1.19
CLN3-225ENST00000566824 CCDC144BQ3MJ40 725 aa22.47■■□□□ 1.19
CLN3-225ENST00000566824 CUL5Q93034 780 aa22.47■■□□□ 1.19
CLN3-225ENST00000566824 ZSCAN31Q96LW9 406 aaPredicted RBP22.47■■□□□ 1.19
CLN3-225ENST00000566824 CRISPLD2Q9H0B8 497 aa22.47■■□□□ 1.19
CLN3-225ENST00000566824 ORC3Q9UBD5 711 aaPredicted RBP22.47■■□□□ 1.19
CLN3-225ENST00000566824 FRMPD4Q14CM0 1322 aa22.46■■□□□ 1.19
CLN3-225ENST00000566824 STK36Q9NRP7 1315 aa22.46■■□□□ 1.19
CLN3-225ENST00000566824 CDKL5O76039 1030 aa22.46■■□□□ 1.19
CLN3-225ENST00000566824 ZMYND12Q9H0C1 365 aa22.46■■□□□ 1.19
CLN3-225ENST00000566824 LOC102724159A0A0B4J2E5 919 aa22.45■■□□□ 1.18
CLN3-225ENST00000566824 TFRCP02786 760 aaKnown RBP22.45■■□□□ 1.18
CLN3-225ENST00000566824 MYCLP12524 364 aaPredicted RBP22.45■■□□□ 1.18
CLN3-225ENST00000566824 CLK2P49760 499 aaKnown RBP22.45■■□□□ 1.18
CLN3-225ENST00000566824 PWP2Q15269 919 aaKnown RBP22.45■■□□□ 1.18
CLN3-225ENST00000566824 GJC2Q5T442 439 aaPredicted RBP22.45■■□□□ 1.18
CLN3-225ENST00000566824 RASGRP4Q8TDF6 673 aa22.45■■□□□ 1.18
CLN3-225ENST00000566824 TMX3Q96JJ7 454 aa22.45■■□□□ 1.18
CLN3-225ENST00000566824 IWS1Q96ST2 819 aa22.45■■□□□ 1.18
CLN3-225ENST00000566824 VTA1Q9NP79 307 aa22.45■■□□□ 1.18
CLN3-225ENST00000566824 MYH7BA7E2Y1 1941 aa22.44■■□□□ 1.18
CLN3-225ENST00000566824 ESYT2A0FGR8 921 aa22.44■■□□□ 1.18
CLN3-225ENST00000566824 RGS20O76081 388 aa22.44■■□□□ 1.18
CLN3-225ENST00000566824 MNX1P50219 401 aaPredicted RBP22.44■■□□□ 1.18
CLN3-225ENST00000566824 MRPL12P52815 198 aaKnown RBP22.44■■□□□ 1.18
CLN3-225ENST00000566824 NPY5RQ15761 445 aa22.44■■□□□ 1.18
CLN3-225ENST00000566824 VSIG10LQ86VR7 867 aa22.44■■□□□ 1.18
CLN3-225ENST00000566824 SH2B1Q9NRF2 756 aaPredicted RBP22.44■■□□□ 1.18
CLN3-225ENST00000566824 OGDHLQ9ULD0 1010 aa22.44■■□□□ 1.18
CLN3-225ENST00000566824 FAM184BQ9ULE4 1060 aa22.44■■□□□ 1.18
CLN3-225ENST00000566824 PCDHA6Q9UN73 950 aa22.44■■□□□ 1.18
CLN3-225ENST00000566824 KCNJ14Q9UNX9 436 aa22.44■■□□□ 1.18
CLN3-225ENST00000566824 PCDHA8Q9Y5H6 950 aa22.44■■□□□ 1.18
CLN3-225ENST00000566824 AKR1A1P14550 325 aa22.43■■□□□ 1.18
CLN3-225ENST00000566824 SMPD1P17405 629 aa22.43■■□□□ 1.18
CLN3-225ENST00000566824 FOSBP53539 338 aa22.43■■□□□ 1.18
CLN3-225ENST00000566824 MRPS9P82933 396 aaKnown RBP22.43■■□□□ 1.18
CLN3-225ENST00000566824 JAKMIP3Q5VZ66 844 aa22.43■■□□□ 1.18
CLN3-225ENST00000566824 SH3GLB2Q9NR46 395 aa22.43■■□□□ 1.18
CLN3-225ENST00000566824 RBM47A0AV96 593 aaKnown RBP22.42■■□□□ 1.18
CLN3-225ENST00000566824 ARIH2O95376 493 aa22.42■■□□□ 1.18
CLN3-225ENST00000566824 STXBP2Q15833 593 aa22.42■■□□□ 1.18
CLN3-225ENST00000566824 SEPT14Q6ZU15 432 aa22.42■■□□□ 1.18
CLN3-225ENST00000566824 DIS3LQ8TF46 1054 aaKnown RBP22.42■■□□□ 1.18
CLN3-225ENST00000566824 ALG1Q9BT22 464 aa22.42■■□□□ 1.18
CLN3-225ENST00000566824 C6orf50Q9HD87 102 aa22.42■■□□□ 1.18
CLN3-225ENST00000566824 DOCK5Q9H7D0 1870 aa22.42■■□□□ 1.18
CLN3-225ENST00000566824 MYADML2A6NDP7 307 aa22.41■■□□□ 1.18
CLN3-225ENST00000566824 PGK1P00558 417 aa22.41■■□□□ 1.18
CLN3-225ENST00000566824 NLRP5P59047 1200 aa22.41■■□□□ 1.18
CLN3-225ENST00000566824 TNFAIP2Q03169 654 aa22.41■■□□□ 1.18
CLN3-225ENST00000566824 COPS5Q92905 334 aa22.41■■□□□ 1.18
CLN3-225ENST00000566824 EIF3JO75822 258 aaKnown RBP22.4■■□□□ 1.18
CLN3-225ENST00000566824 RARBP10826 455 aa22.4■■□□□ 1.18
CLN3-225ENST00000566824 CCND2P30279 289 aa22.4■■□□□ 1.18
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms