RNA–Protein interactions for RNA: ENST00000562626.1

CLK3-208, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 812 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-208ENST00000562626 PIK3CDO00329 1044 aa11.26□□□□□ -0.61
CLK3-208ENST00000562626 EDIL3O43854 480 aa11.26□□□□□ -0.61
CLK3-208ENST00000562626 POLR2MP0CAP2 368 aa11.26□□□□□ -0.61
CLK3-208ENST00000562626 ZNF865P0CJ78 1059 aaPredicted RBP11.26□□□□□ -0.61
CLK3-208ENST00000562626 CYBAP13498 195 aa11.26□□□□□ -0.61
CLK3-208ENST00000562626 EIF2AK2P19525 551 aaKnown RBP11.26□□□□□ -0.61
CLK3-208ENST00000562626 CLK2P49760 499 aaKnown RBP11.26□□□□□ -0.61
CLK3-208ENST00000562626 SOX10P56693 466 aa11.26□□□□□ -0.61
CLK3-208ENST00000562626 PPP1R18Q6NYC8 613 aa11.26□□□□□ -0.61
CLK3-208ENST00000562626 MAMDC4Q6UXC1 1216 aa11.26□□□□□ -0.61
CLK3-208ENST00000562626 EEPD1Q7L9B9 569 aa11.26□□□□□ -0.61
CLK3-208ENST00000562626 ZNF467Q7Z7K2 595 aaPredicted RBP11.26□□□□□ -0.61
CLK3-208ENST00000562626 MCF2L2Q86YR7 1114 aa11.26□□□□□ -0.61
CLK3-208ENST00000562626 FBXO16Q8IX29 292 aaPredicted RBP11.26□□□□□ -0.61
CLK3-208ENST00000562626 TRIM22Q8IYM9 498 aa11.26□□□□□ -0.61
CLK3-208ENST00000562626 OXER1Q8TDS5 423 aa11.26□□□□□ -0.61
CLK3-208ENST00000562626 MORC4Q8TE76 937 aa11.26□□□□□ -0.61
CLK3-208ENST00000562626 ZMYND12Q9H0C1 365 aa11.26□□□□□ -0.61
CLK3-208ENST00000562626 PSTPIP2Q9H939 334 aa11.26□□□□□ -0.61
CLK3-208ENST00000562626 RIC8AQ9NPQ8 531 aa11.26□□□□□ -0.61
CLK3-208ENST00000562626 PXMP2Q9NR77 195 aa11.26□□□□□ -0.61
CLK3-208ENST00000562626 PDGFCQ9NRA1 345 aa11.26□□□□□ -0.61
CLK3-208ENST00000562626 CDKN2AIPQ9NXV6 580 aaPredicted RBP11.26□□□□□ -0.61
CLK3-208ENST00000562626 BIN2Q9UBW5 565 aaPredicted RBP11.26□□□□□ -0.61
CLK3-208ENST00000562626 FRMPD4Q14CM0 1322 aa11.26□□□□□ -0.61
CLK3-208ENST00000562626 ESYT2A0FGR8 921 aa11.25□□□□□ -0.61
CLK3-208ENST00000562626 FAM205CA6NFA0 338 aa11.25□□□□□ -0.61
CLK3-208ENST00000562626 M0R2N6 131 aa11.25□□□□□ -0.61
CLK3-208ENST00000562626 CDKL5O76039 1030 aa11.25□□□□□ -0.61
CLK3-208ENST00000562626 EDNRBP24530 442 aa11.25□□□□□ -0.61
CLK3-208ENST00000562626 ADCY7P51828 1080 aa11.25□□□□□ -0.61
CLK3-208ENST00000562626 IRX5P78411 483 aaPredicted RBP11.25□□□□□ -0.61
CLK3-208ENST00000562626 AKAP17AQ02040 695 aaKnown RBP11.25□□□□□ -0.61
CLK3-208ENST00000562626 GUCY1B3Q02153 619 aa11.25□□□□□ -0.61
CLK3-208ENST00000562626 CUL4AQ13619 759 aa11.25□□□□□ -0.61
CLK3-208ENST00000562626 PGM5Q15124 567 aa11.25□□□□□ -0.61
CLK3-208ENST00000562626 JAKMIP3Q5VZ66 844 aa11.25□□□□□ -0.61
CLK3-208ENST00000562626 ANO1Q5XXA6 986 aa11.25□□□□□ -0.61
CLK3-208ENST00000562626 CPLX2Q6PUV4 134 aaKnown RBP11.25□□□□□ -0.61
CLK3-208ENST00000562626 SNX21Q969T3 373 aa11.25□□□□□ -0.61
CLK3-208ENST00000562626 RMDN3Q96TC7 470 aa11.25□□□□□ -0.61
CLK3-208ENST00000562626 LLPHQ9BRT6 129 aaKnown RBP11.25□□□□□ -0.61
CLK3-208ENST00000562626 ALG1Q9BT22 464 aa11.25□□□□□ -0.61
CLK3-208ENST00000562626 FOXD4L1Q9NU39 408 aa11.25□□□□□ -0.61
CLK3-208ENST00000562626 RBM27Q9P2N5 1060 aaKnown RBP11.25□□□□□ -0.61
CLK3-208ENST00000562626 C11orf97A0A1B0GVM6 126 aaPredicted RBP11.24□□□□□ -0.61
CLK3-208ENST00000562626 POTEFA5A3E0 1075 aa11.24□□□□□ -0.61
CLK3-208ENST00000562626 hCG_1984214I3L0E3 225 aa11.24□□□□□ -0.61
CLK3-208ENST00000562626 K7ELQ4 463 aaPredicted RBP11.24□□□□□ -0.61
CLK3-208ENST00000562626 RGS20O76081 388 aa11.24□□□□□ -0.61
CLK3-208ENST00000562626 CCL5P13501 91 aa11.24□□□□□ -0.61
CLK3-208ENST00000562626 MRPS9P82933 396 aaKnown RBP11.24□□□□□ -0.61
CLK3-208ENST00000562626 EARS2Q5JPH6 523 aaKnown RBP11.24□□□□□ -0.61
CLK3-208ENST00000562626 GJC2Q5T442 439 aaPredicted RBP11.24□□□□□ -0.61
CLK3-208ENST00000562626 TAPT1Q6NXT6 567 aa11.24□□□□□ -0.61
CLK3-208ENST00000562626 ZNF713Q8N859 430 aaPredicted RBP11.24□□□□□ -0.61
CLK3-208ENST00000562626 CUL5Q93034 780 aa11.24□□□□□ -0.61
CLK3-208ENST00000562626 PDCD2LQ9BRP1 358 aa11.24□□□□□ -0.61
CLK3-208ENST00000562626 PHF20Q9BVI0 1012 aa11.24□□□□□ -0.61
CLK3-208ENST00000562626 PCDHA6Q9UN73 950 aa11.24□□□□□ -0.61
CLK3-208ENST00000562626 PCDHA8Q9Y5H6 950 aa11.24□□□□□ -0.61
CLK3-208ENST00000562626 SYNGAP1Q96PV0 1343 aa11.24□□□□□ -0.61
CLK3-208ENST00000562626 KAT6AQ92794 2004 aa11.24□□□□□ -0.61
CLK3-208ENST00000562626 ARIH2O95376 493 aa11.23□□□□□ -0.61
CLK3-208ENST00000562626 NR3C2P08235 984 aa11.23□□□□□ -0.61
CLK3-208ENST00000562626 MYCLP12524 364 aaPredicted RBP11.23□□□□□ -0.61
CLK3-208ENST00000562626 GJB2P29033 226 aa11.23□□□□□ -0.61
CLK3-208ENST00000562626 MCM2P49736 904 aa11.23□□□□□ -0.61
CLK3-208ENST00000562626 NLRP5P59047 1200 aa11.23□□□□□ -0.61
CLK3-208ENST00000562626 TRAF1Q13077 416 aa11.23□□□□□ -0.61
CLK3-208ENST00000562626 MFSD14CQ5VZR4 134 aa11.23□□□□□ -0.61
CLK3-208ENST00000562626 KRT40Q6A162 431 aa11.23□□□□□ -0.61
CLK3-208ENST00000562626 DNERQ8NFT8 737 aa11.23□□□□□ -0.61
CLK3-208ENST00000562626 CRYGNQ8WXF5 182 aa11.23□□□□□ -0.61
CLK3-208ENST00000562626 TNFRSF25Q93038 417 aa11.23□□□□□ -0.61
CLK3-208ENST00000562626 ANO3Q9BYT9 981 aa11.23□□□□□ -0.61
CLK3-208ENST00000562626 XRN2Q9H0D6 950 aaKnown RBP eCLIP11.23□□□□□ -0.61
CLK3-208ENST00000562626 PAK6Q9NQU5 681 aaPredicted RBP11.23□□□□□ -0.61
CLK3-208ENST00000562626 SH3GLB2Q9NR46 395 aa11.23□□□□□ -0.61
CLK3-208ENST00000562626 SLC5A4Q9NY91 659 aa11.23□□□□□ -0.61
CLK3-208ENST00000562626 ZHX1Q9UKY1 873 aaPredicted RBP11.23□□□□□ -0.61
CLK3-208ENST00000562626 PCDHA4Q9UN74 947 aa11.23□□□□□ -0.61
CLK3-208ENST00000562626 LOXHD1Q8IVV2 1947 aa11.23□□□□□ -0.61
CLK3-208ENST00000562626 SCN10AQ9Y5Y9 1956 aa11.23□□□□□ -0.61
CLK3-208ENST00000562626 WNT7AO00755 349 aa11.22□□□□□ -0.61
CLK3-208ENST00000562626 ADCYAP1R1P41586 468 aa11.22□□□□□ -0.61
CLK3-208ENST00000562626 MRPL12P52815 198 aaKnown RBP11.22□□□□□ -0.61
CLK3-208ENST00000562626 SEMA3FQ13275 785 aa11.22□□□□□ -0.61
CLK3-208ENST00000562626 NR5A1Q13285 461 aa11.22□□□□□ -0.61
CLK3-208ENST00000562626 ACVR2BQ13705 512 aa11.22□□□□□ -0.61
CLK3-208ENST00000562626 CCDC144BQ3MJ40 725 aa11.22□□□□□ -0.61
CLK3-208ENST00000562626 ARHGEF16Q5VV41 709 aa11.22□□□□□ -0.61
CLK3-208ENST00000562626 ARID2Q68CP9 1835 aa11.22□□□□□ -0.61
CLK3-208ENST00000562626 LHX8Q68G74 356 aa11.22□□□□□ -0.61
CLK3-208ENST00000562626 TRMT44Q8IYL2 757 aaKnown RBP11.22□□□□□ -0.61
CLK3-208ENST00000562626 BLIDQ8IZY5 108 aa11.22□□□□□ -0.61
CLK3-208ENST00000562626 REXO1Q8N1G1 1221 aaKnown RBP11.22□□□□□ -0.61
CLK3-208ENST00000562626 MSL3Q8N5Y2 521 aaKnown RBP11.22□□□□□ -0.61
CLK3-208ENST00000562626 SAMD3Q8N6K7 520 aa11.22□□□□□ -0.61
CLK3-208ENST00000562626 DAGLBQ8NCG7 672 aa11.22□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 69.6 ms