RNA–Protein interactions for RNA: ENST00000555213.1

SHMT2-218, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 611 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-218ENST00000555213 SYNGAP1Q96PV0 1343 aa12.51□□□□□ -0.41
SHMT2-218ENST00000555213 BAZ2BQ9UIF8 2168 aaKnown RBP12.5□□□□□ -0.41
SHMT2-218ENST00000555213 CCDC85CA6NKD9 419 aa12.5□□□□□ -0.41
SHMT2-218ENST00000555213 SPDYE3A6NKU9 549 aa12.5□□□□□ -0.41
SHMT2-218ENST00000555213 PIK3CDO00329 1044 aa12.5□□□□□ -0.41
SHMT2-218ENST00000555213 OPLAHO14841 1288 aa12.5□□□□□ -0.41
SHMT2-218ENST00000555213 PRKAR2AP13861 404 aaKnown RBP12.5□□□□□ -0.41
SHMT2-218ENST00000555213 HOXA13P31271 388 aaPredicted RBP12.5□□□□□ -0.41
SHMT2-218ENST00000555213 TRIM29Q14134 588 aa12.5□□□□□ -0.41
SHMT2-218ENST00000555213 PKN1Q16512 942 aa12.5□□□□□ -0.41
SHMT2-218ENST00000555213 CCL14Q16627 93 aa12.5□□□□□ -0.41
SHMT2-218ENST00000555213 FOXD4L5Q5VV16 416 aaPredicted RBP12.5□□□□□ -0.41
SHMT2-218ENST00000555213 SYTL5Q8TDW5 730 aaPredicted RBP12.5□□□□□ -0.41
SHMT2-218ENST00000555213 NSUN6Q8TEA1 469 aaKnown RBP12.5□□□□□ -0.41
SHMT2-218ENST00000555213 SH3TC2Q8TF17 1288 aa12.5□□□□□ -0.41
SHMT2-218ENST00000555213 FOXD4L4Q8WXT5 416 aaPredicted RBP12.5□□□□□ -0.41
SHMT2-218ENST00000555213 ARMC5Q96C12 935 aa12.5□□□□□ -0.41
SHMT2-218ENST00000555213 TINF2Q9BSI4 451 aa12.5□□□□□ -0.41
SHMT2-218ENST00000555213 RIC8AQ9NPQ8 531 aa12.5□□□□□ -0.41
SHMT2-218ENST00000555213 GJB4Q9NTQ9 266 aa12.5□□□□□ -0.41
SHMT2-218ENST00000555213 NRBP1Q9UHY1 535 aa12.5□□□□□ -0.41
SHMT2-218ENST00000555213 SMCO2A6NFE2 343 aa12.49□□□□□ -0.41
SHMT2-218ENST00000555213 BAG4O95429 457 aaKnown RBP12.49□□□□□ -0.41
SHMT2-218ENST00000555213 ALDH5A1P51649 535 aaPredicted RBP12.49□□□□□ -0.41
SHMT2-218ENST00000555213 NLRP5P59047 1200 aa12.49□□□□□ -0.41
SHMT2-218ENST00000555213 PDE4DQ08499 809 aa12.49□□□□□ -0.41
SHMT2-218ENST00000555213 ARHGEF16Q5VV41 709 aa12.49□□□□□ -0.41
SHMT2-218ENST00000555213 MCTP2Q6DN12 878 aa12.49□□□□□ -0.41
SHMT2-218ENST00000555213 MAMDC4Q6UXC1 1216 aa12.49□□□□□ -0.41
SHMT2-218ENST00000555213 ARMCX2Q7L311 632 aa12.49□□□□□ -0.41
SHMT2-218ENST00000555213 FCHSD1Q86WN1 690 aa12.49□□□□□ -0.41
SHMT2-218ENST00000555213 FAM184AQ8NB25 1140 aa12.49□□□□□ -0.41
SHMT2-218ENST00000555213 RMDN3Q96TC7 470 aa12.49□□□□□ -0.41
SHMT2-218ENST00000555213 ALG1Q9BT22 464 aa12.49□□□□□ -0.41
SHMT2-218ENST00000555213 VPS54Q9P1Q0 977 aa12.49□□□□□ -0.41
SHMT2-218ENST00000555213 SOWAHBA6NEL2 793 aa12.48□□□□□ -0.41
SHMT2-218ENST00000555213 F13A1P00488 732 aa12.48□□□□□ -0.41
SHMT2-218ENST00000555213 FOSP01100 380 aaPredicted RBP12.48□□□□□ -0.41
SHMT2-218ENST00000555213 CYP2C19P33261 490 aa12.48□□□□□ -0.41
SHMT2-218ENST00000555213 MCM4P33991 863 aa12.48□□□□□ -0.41
SHMT2-218ENST00000555213 AP3B2Q13367 1082 aa12.48□□□□□ -0.41
SHMT2-218ENST00000555213 GALNT17Q6IS24 598 aa12.48□□□□□ -0.41
SHMT2-218ENST00000555213 TYW1BQ6NUM6 668 aa12.48□□□□□ -0.41
SHMT2-218ENST00000555213 USP17L6PQ6QN14 398 aa12.48□□□□□ -0.41
SHMT2-218ENST00000555213 REXO1Q8N1G1 1221 aaKnown RBP12.48□□□□□ -0.41
SHMT2-218ENST00000555213 FBXO18Q8NFZ0 1043 aa12.48□□□□□ -0.41
SHMT2-218ENST00000555213 ZNF333Q96JL9 665 aa12.48□□□□□ -0.41
SHMT2-218ENST00000555213 IWS1Q96ST2 819 aa12.48□□□□□ -0.41
SHMT2-218ENST00000555213 ZMYND12Q9H0C1 365 aa12.48□□□□□ -0.41
SHMT2-218ENST00000555213 BRMS1Q9HCU9 246 aa12.48□□□□□ -0.41
SHMT2-218ENST00000555213 CDKN2AIPQ9NXV6 580 aaPredicted RBP12.48□□□□□ -0.41
SHMT2-218ENST00000555213 FLRT1Q9NZU1 646 aa12.48□□□□□ -0.41
SHMT2-218ENST00000555213 ZHX1Q9UKY1 873 aaPredicted RBP12.48□□□□□ -0.41
SHMT2-218ENST00000555213 RPTORQ8N122 1335 aa12.47□□□□□ -0.41
SHMT2-218ENST00000555213 MEIS2O14770 477 aa12.47□□□□□ -0.41
SHMT2-218ENST00000555213 PDIA4P13667 645 aaKnown RBP12.47□□□□□ -0.41
SHMT2-218ENST00000555213 EIF2AK2P19525 551 aaKnown RBP12.47□□□□□ -0.41
SHMT2-218ENST00000555213 PDCP20941 246 aa12.47□□□□□ -0.41
SHMT2-218ENST00000555213 CCND2P30279 289 aa12.47□□□□□ -0.41
SHMT2-218ENST00000555213 RESTQ13127 1097 aa12.47□□□□□ -0.41
SHMT2-218ENST00000555213 UBE2SQ16763 222 aa12.47□□□□□ -0.41
SHMT2-218ENST00000555213 MAP3K21Q5TCX8 1036 aa12.47□□□□□ -0.41
SHMT2-218ENST00000555213 TBC1D5Q92609 795 aa12.47□□□□□ -0.41
SHMT2-218ENST00000555213 FGD4Q96M96 766 aa12.47□□□□□ -0.41
SHMT2-218ENST00000555213 ABHD16BQ9H3Z7 469 aa12.47□□□□□ -0.41
SHMT2-218ENST00000555213 HMX1Q9NP08 348 aaPredicted RBP12.47□□□□□ -0.41
SHMT2-218ENST00000555213 VTA1Q9NP79 307 aa12.47□□□□□ -0.41
SHMT2-218ENST00000555213 PXMP2Q9NR77 195 aa12.47□□□□□ -0.41
SHMT2-218ENST00000555213 COL20A1Q9P218 1284 aa12.47□□□□□ -0.41
SHMT2-218ENST00000555213 DOCK3Q8IZD9 2030 aa12.47□□□□□ -0.41
SHMT2-218ENST00000555213 PLXNA1Q9UIW2 1896 aa12.46□□□□□ -0.41
SHMT2-218ENST00000555213 ASTN1O14525 1302 aa12.46□□□□□ -0.41
SHMT2-218ENST00000555213 MSCO60682 206 aa12.46□□□□□ -0.41
SHMT2-218ENST00000555213 MYCP01106 439 aaPredicted RBP12.46□□□□□ -0.41
SHMT2-218ENST00000555213 CYBAP13498 195 aa12.46□□□□□ -0.41
SHMT2-218ENST00000555213 CCL5P13501 91 aa12.46□□□□□ -0.41
SHMT2-218ENST00000555213 EDNRBP24530 442 aa12.46□□□□□ -0.41
SHMT2-218ENST00000555213 CNGA1P29973 690 aa12.46□□□□□ -0.41
SHMT2-218ENST00000555213 CACNB2Q08289 660 aaPredicted RBP12.46□□□□□ -0.41
SHMT2-218ENST00000555213 SAFBQ15424 915 aaKnown RBP eCLIP12.46□□□□□ -0.41
SHMT2-218ENST00000555213 STXBP2Q15833 593 aa12.46□□□□□ -0.41
SHMT2-218ENST00000555213 XRRA1Q6P2D8 792 aa12.46□□□□□ -0.41
SHMT2-218ENST00000555213 MORC4Q8TE76 937 aa12.46□□□□□ -0.41
SHMT2-218ENST00000555213 PURBQ96QR8 312 aaKnown RBP12.46□□□□□ -0.41
SHMT2-218ENST00000555213 TAAR1Q96RJ0 339 aa12.46□□□□□ -0.41
SHMT2-218ENST00000555213 PDCD2LQ9BRP1 358 aa12.46□□□□□ -0.41
SHMT2-218ENST00000555213 TMEM106CQ9BVX2 250 aa12.46□□□□□ -0.41
SHMT2-218ENST00000555213 XRN2Q9H0D6 950 aaKnown RBP eCLIP12.46□□□□□ -0.413e-7■□□□□ 10.1
SHMT2-218ENST00000555213 RNF208Q9H0X6 261 aa12.46□□□□□ -0.41
SHMT2-218ENST00000555213 PCDHA4Q9UN74 947 aa12.46□□□□□ -0.41
SHMT2-218ENST00000555213 FRMPD4Q14CM0 1322 aa12.45□□□□□ -0.42
SHMT2-218ENST00000555213 STAM2O75886 525 aa12.45□□□□□ -0.42
SHMT2-218ENST00000555213 IGHA2P01877 340 aa12.45□□□□□ -0.42
SHMT2-218ENST00000555213 NR3C2P08235 984 aa12.45□□□□□ -0.42
SHMT2-218ENST00000555213 AKR1A1P14550 325 aa12.45□□□□□ -0.42
SHMT2-218ENST00000555213 GUCY1B3Q02153 619 aa12.45□□□□□ -0.42
SHMT2-218ENST00000555213 TRIM32Q13049 653 aa12.45□□□□□ -0.42
SHMT2-218ENST00000555213 ACVR2BQ13705 512 aa12.45□□□□□ -0.42
SHMT2-218ENST00000555213 KRT40Q6A162 431 aa12.45□□□□□ -0.42
SHMT2-218ENST00000555213 FAM173BQ6P4H8 233 aa12.45□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms