RNA–Protein interactions for RNA: ENST00000553308.1

SYNE2-209, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 4

Gene SYNE2, Length 557 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-209ENST00000553308 KHSRPQ92945 711 aaKnown RBP eCLIP10.72□□□□□ -0.69
SYNE2-209ENST00000553308 LRFN3Q9BTN0 628 aa10.72□□□□□ -0.69
SYNE2-209ENST00000553308 COG5Q9UP83 839 aa10.72□□□□□ -0.69
SYNE2-209ENST00000553308 RAD50Q92878 1312 aa10.72□□□□□ -0.69
SYNE2-209ENST00000553308 TET1Q8NFU7 2136 aa10.72□□□□□ -0.69
SYNE2-209ENST00000553308 A6NJR5 290 aa10.71□□□□□ -0.69
SYNE2-209ENST00000553308 NKRFO15226 690 aaKnown RBP eCLIP10.71□□□□□ -0.69
SYNE2-209ENST00000553308 ORC4O43929 436 aa10.71□□□□□ -0.69
SYNE2-209ENST00000553308 NCOR1O75376 2440 aa10.71□□□□□ -0.69
SYNE2-209ENST00000553308 ARIH2O95376 493 aa10.71□□□□□ -0.69
SYNE2-209ENST00000553308 EDNRBP24530 442 aa10.71□□□□□ -0.69
SYNE2-209ENST00000553308 HOXD11P31277 338 aaPredicted RBP10.71□□□□□ -0.69
SYNE2-209ENST00000553308 RPS6P62753 249 aaKnown RBP10.71□□□□□ -0.69
SYNE2-209ENST00000553308 BFSP2Q13515 415 aa10.71□□□□□ -0.69
SYNE2-209ENST00000553308 BRDTQ58F21 947 aaPredicted RBP10.71□□□□□ -0.69
SYNE2-209ENST00000553308 RNF207Q6ZRF8 634 aa10.71□□□□□ -0.69
SYNE2-209ENST00000553308 GDPD5Q8WTR4 605 aa10.71□□□□□ -0.69
SYNE2-209ENST00000553308 SCFD2Q8WU76 684 aa10.71□□□□□ -0.69
SYNE2-209ENST00000553308 HLA-CQ95604 372 aa10.71□□□□□ -0.69
SYNE2-209ENST00000553308 CTAGE1Q96RT6 745 aa10.71□□□□□ -0.69
SYNE2-209ENST00000553308 TMEM47Q9BQJ4 181 aa10.71□□□□□ -0.69
SYNE2-209ENST00000553308 TOMM22Q9NS69 142 aa10.71□□□□□ -0.69
SYNE2-209ENST00000553308 ANAPC4Q9UJX5 808 aa10.71□□□□□ -0.69
SYNE2-209ENST00000553308 NOD1Q9Y239 953 aa10.71□□□□□ -0.69
SYNE2-209ENST00000553308 FAM86C2PA6NEL3 165 aa10.7□□□□□ -0.7
SYNE2-209ENST00000553308 KIF28PB7ZC32 967 aa10.7□□□□□ -0.7
SYNE2-209ENST00000553308 KPNA6O60684 536 aa10.7□□□□□ -0.7
SYNE2-209ENST00000553308 BAIAP3O94812 1187 aa10.7□□□□□ -0.7
SYNE2-209ENST00000553308 TXNP10599 105 aaKnown RBP10.7□□□□□ -0.7
SYNE2-209ENST00000553308 PDHBP11177 359 aa10.7□□□□□ -0.7
SYNE2-209ENST00000553308 TOP1P11387 765 aaKnown RBP10.7□□□□□ -0.7
SYNE2-209ENST00000553308 KCNJ6P48051 423 aa10.7□□□□□ -0.7
SYNE2-209ENST00000553308 WDR5P61964 334 aaKnown RBP10.7□□□□□ -0.7
SYNE2-209ENST00000553308 DEFB103AP81534 67 aa10.7□□□□□ -0.7
SYNE2-209ENST00000553308 PTPN11Q06124 597 aaPredicted RBP10.7□□□□□ -0.7
SYNE2-209ENST00000553308 GPNMBQ14956 572 aa10.7□□□□□ -0.7
SYNE2-209ENST00000553308 PTGISQ16647 500 aa10.7□□□□□ -0.7
SYNE2-209ENST00000553308 RRP12Q5JTH9 1297 aaKnown RBP10.7□□□□□ -0.7
SYNE2-209ENST00000553308 TMEM31Q5JXX7 168 aa10.7□□□□□ -0.7
SYNE2-209ENST00000553308 C11orf16Q9NQ32 467 aa10.7□□□□□ -0.7
SYNE2-209ENST00000553308 HCN4Q9Y3Q4 1203 aa10.7□□□□□ -0.7
SYNE2-209ENST00000553308 WDR19Q8NEZ3 1342 aa10.69□□□□□ -0.7
SYNE2-209ENST00000553308 FGRP09769 529 aa10.69□□□□□ -0.7
SYNE2-209ENST00000553308 MX1P20591 662 aa10.69□□□□□ -0.7
SYNE2-209ENST00000553308 ZNF543Q08ER8 600 aa10.69□□□□□ -0.7
SYNE2-209ENST00000553308 TCTN1Q2MV58 587 aa10.69□□□□□ -0.7
SYNE2-209ENST00000553308 GDF6Q6KF10 455 aaPredicted RBP10.69□□□□□ -0.7
SYNE2-209ENST00000553308 DNERQ8NFT8 737 aa10.69□□□□□ -0.7
SYNE2-209ENST00000553308 AFG1LQ8WV93 481 aa10.69□□□□□ -0.7
SYNE2-209ENST00000553308 DHX38Q92620 1227 aaKnown RBP10.69□□□□□ -0.7
SYNE2-209ENST00000553308 MPHOSPH6Q99547 160 aaKnown RBP10.69□□□□□ -0.7
SYNE2-209ENST00000553308 CD320Q9NPF0 282 aa10.69□□□□□ -0.7
SYNE2-209ENST00000553308 MTUS1Q9ULD2 1270 aa10.69□□□□□ -0.7
SYNE2-209ENST00000553308 TRIP12Q14669 1992 aaPredicted RBP10.68□□□□□ -0.7
SYNE2-209ENST00000553308 SALL3Q9BXA9 1300 aa10.68□□□□□ -0.7
SYNE2-209ENST00000553308 BDP1A6H8Y1 2624 aa10.68□□□□□ -0.7
SYNE2-209ENST00000553308 NBNO60934 754 aa10.68□□□□□ -0.7
SYNE2-209ENST00000553308 MMP3P08254 477 aa10.68□□□□□ -0.7
SYNE2-209ENST00000553308 SELPP16109 830 aa10.68□□□□□ -0.7
SYNE2-209ENST00000553308 USH1GQ495M9 461 aa10.68□□□□□ -0.7
SYNE2-209ENST00000553308 CCDC62Q6P9F0 684 aa10.68□□□□□ -0.7
SYNE2-209ENST00000553308 LRRC8DQ7L1W4 858 aa10.68□□□□□ -0.7
SYNE2-209ENST00000553308 CCDC155Q8N6L0 562 aa10.68□□□□□ -0.7
SYNE2-209ENST00000553308 CAGE1Q8TC20 777 aa10.68□□□□□ -0.7
SYNE2-209ENST00000553308 AFAP1L1Q8TED9 768 aa10.68□□□□□ -0.7
SYNE2-209ENST00000553308 KAT2BQ92831 832 aa10.68□□□□□ -0.7
SYNE2-209ENST00000553308 ZBED2Q9BTP6 218 aa10.68□□□□□ -0.7
SYNE2-209ENST00000553308 CPVLQ9H3G5 476 aa10.68□□□□□ -0.7
SYNE2-209ENST00000553308 XIRP2A4UGR9 3374 aa10.67□□□□□ -0.7
SYNE2-209ENST00000553308 A0A0D9SFI3 127 aa10.67□□□□□ -0.7
SYNE2-209ENST00000553308 GH1P01241 217 aa10.67□□□□□ -0.7
SYNE2-209ENST00000553308 FGAP02671 866 aa10.67□□□□□ -0.7
SYNE2-209ENST00000553308 SNHG28P0DPA3 235 aa10.67□□□□□ -0.7
SYNE2-209ENST00000553308 HAND2P61296 217 aa10.67□□□□□ -0.7
SYNE2-209ENST00000553308 ARHGAP1Q07960 439 aa10.67□□□□□ -0.7
SYNE2-209ENST00000553308 ALX1Q15699 326 aa10.67□□□□□ -0.7
SYNE2-209ENST00000553308 LY6KQ17RY6 165 aa10.67□□□□□ -0.7
SYNE2-209ENST00000553308 CNKSR3Q6P9H4 555 aa10.67□□□□□ -0.7
SYNE2-209ENST00000553308 SEPT14Q6ZU15 432 aa10.67□□□□□ -0.7
SYNE2-209ENST00000553308 CHST3Q7LGC8 479 aa10.67□□□□□ -0.7
SYNE2-209ENST00000553308 SESTD1Q86VW0 696 aa10.67□□□□□ -0.7
SYNE2-209ENST00000553308 FAM227BQ96M60 508 aa10.67□□□□□ -0.7
SYNE2-209ENST00000553308 SUGCTQ9HAC7 445 aa10.67□□□□□ -0.7
SYNE2-209ENST00000553308 TCP11L1Q9NUJ3 509 aa10.67□□□□□ -0.7
SYNE2-209ENST00000553308 COL20A1Q9P218 1284 aa10.67□□□□□ -0.7
SYNE2-209ENST00000553308 PNMA2Q9UL42 364 aa10.67□□□□□ -0.7
SYNE2-209ENST00000553308 ARIH1Q9Y4X5 557 aaPredicted RBP10.67□□□□□ -0.7
SYNE2-209ENST00000553308 PCDHB15Q9Y5E8 787 aa10.67□□□□□ -0.7
SYNE2-209ENST00000553308 SIP14410 1827 aa10.67□□□□□ -0.7
SYNE2-209ENST00000553308 TRANK1O15050 2925 aa10.67□□□□□ -0.7
SYNE2-209ENST00000553308 LINC01553A4QN01 128 aa10.66□□□□□ -0.7
SYNE2-209ENST00000553308 B4DLN1 442 aa10.66□□□□□ -0.7
SYNE2-209ENST00000553308 GPR37L1O60883 481 aa10.66□□□□□ -0.7
SYNE2-209ENST00000553308 GJB5O95377 273 aa10.66□□□□□ -0.7
SYNE2-209ENST00000553308 CXCL10P02778 98 aa10.66□□□□□ -0.7
SYNE2-209ENST00000553308 GOLGA8HP0CJ92 632 aa10.66□□□□□ -0.7
SYNE2-209ENST00000553308 CKBP12277 381 aa10.66□□□□□ -0.7
SYNE2-209ENST00000553308 MRPL12P52815 198 aaKnown RBP10.66□□□□□ -0.7
SYNE2-209ENST00000553308 ERVK-21P61565 698 aa10.66□□□□□ -0.7
SYNE2-209ENST00000553308 RBL2Q08999 1139 aa10.66□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms