RNA–Protein interactions for RNA: ENST00000550280.1

SMARCD1-208, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1, humanhuman

TSL 2

Gene SMARCD1, Length 567 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCD1-208ENST00000550280 RPUSD2Q8IZ73 545 aaKnown RBP13.62□□□□□ -0.23
SMARCD1-208ENST00000550280 ZKSCAN3Q9BRR0 538 aa13.62□□□□□ -0.23
SMARCD1-208ENST00000550280 UBA5Q9GZZ9 404 aa13.62□□□□□ -0.23
SMARCD1-208ENST00000550280 CERS4Q9HA82 394 aa13.62□□□□□ -0.23
SMARCD1-208ENST00000550280 TRANK1O15050 2925 aa13.61□□□□□ -0.23
SMARCD1-208ENST00000550280 IQCF3P0C7M6 154 aa13.61□□□□□ -0.23
SMARCD1-208ENST00000550280 SUPT20HL2P0C7V6 817 aa13.61□□□□□ -0.23
SMARCD1-208ENST00000550280 BMP1P13497 986 aa13.61□□□□□ -0.23
SMARCD1-208ENST00000550280 COL9A1P20849 921 aa13.61□□□□□ -0.23
SMARCD1-208ENST00000550280 PDE4DQ08499 809 aa13.61□□□□□ -0.23
SMARCD1-208ENST00000550280 PPP2R5BQ15173 497 aa13.61□□□□□ -0.23
SMARCD1-208ENST00000550280 NFRKBQ6P4R8 1299 aa13.61□□□□□ -0.23
SMARCD1-208ENST00000550280 DNERQ8NFT8 737 aa13.61□□□□□ -0.23
SMARCD1-208ENST00000550280 SCFD2Q8WU76 684 aa13.61□□□□□ -0.23
SMARCD1-208ENST00000550280 DHX38Q92620 1227 aaKnown RBP13.61□□□□□ -0.23
SMARCD1-208ENST00000550280 KAT2BQ92831 832 aa13.61□□□□□ -0.23
SMARCD1-208ENST00000550280 MTCH2Q9Y6C9 303 aa13.61□□□□□ -0.23
SMARCD1-208ENST00000550280 TANC1Q9C0D5 1861 aa13.61□□□□□ -0.23
SMARCD1-208ENST00000550280 CCDC171Q6TFL3 1326 aa13.61□□□□□ -0.23
SMARCD1-208ENST00000550280 TET1Q8NFU7 2136 aa13.6□□□□□ -0.23
SMARCD1-208ENST00000550280 PITPNM1O00562 1244 aa13.6□□□□□ -0.23
SMARCD1-208ENST00000550280 NKRFO15226 690 aaKnown RBP eCLIP13.6□□□□□ -0.23
SMARCD1-208ENST00000550280 PFKMP08237 780 aa13.6□□□□□ -0.23
SMARCD1-208ENST00000550280 TXNP10599 105 aaKnown RBP13.6□□□□□ -0.23
SMARCD1-208ENST00000550280 POU3F3P20264 500 aaPredicted RBP13.6□□□□□ -0.23
SMARCD1-208ENST00000550280 KCNQ1P51787 676 aa13.6□□□□□ -0.23
SMARCD1-208ENST00000550280 TAP1Q03518 808 aa13.6□□□□□ -0.23
SMARCD1-208ENST00000550280 ARHGAP1Q07960 439 aa13.6□□□□□ -0.23
SMARCD1-208ENST00000550280 HDAC1Q13547 482 aaPredicted RBP13.6□□□□□ -0.23
SMARCD1-208ENST00000550280 USH1GQ495M9 461 aa13.6□□□□□ -0.23
SMARCD1-208ENST00000550280 FAM47CQ5HY64 1035 aa13.6□□□□□ -0.23
SMARCD1-208ENST00000550280 MICALL1Q8N3F8 863 aa13.6□□□□□ -0.23
SMARCD1-208ENST00000550280 TTC14Q96N46 770 aa13.6□□□□□ -0.23
SMARCD1-208ENST00000550280 TAAR1Q96RJ0 339 aa13.6□□□□□ -0.23
SMARCD1-208ENST00000550280 UHRF1Q96T88 793 aaPredicted RBP13.6□□□□□ -0.23
SMARCD1-208ENST00000550280 PTPRSQ13332 1948 aa13.59□□□□□ -0.23
SMARCD1-208ENST00000550280 OPLAHO14841 1288 aa13.59□□□□□ -0.23
SMARCD1-208ENST00000550280 LPXNO60711 386 aa13.59□□□□□ -0.23
SMARCD1-208ENST00000550280 LY6KQ17RY6 165 aa13.59□□□□□ -0.23
SMARCD1-208ENST00000550280 TMEM67Q5HYA8 995 aa13.59□□□□□ -0.23
SMARCD1-208ENST00000550280 GDF6Q6KF10 455 aaPredicted RBP13.59□□□□□ -0.23
SMARCD1-208ENST00000550280 TMCO2Q7Z6W1 182 aaPredicted RBP13.59□□□□□ -0.23
SMARCD1-208ENST00000550280 RGS22Q8NE09 1264 aa13.59□□□□□ -0.23
SMARCD1-208ENST00000550280 SYTL5Q8TDW5 730 aaPredicted RBP13.59□□□□□ -0.23
SMARCD1-208ENST00000550280 AFG1LQ8WV93 481 aa13.59□□□□□ -0.23
SMARCD1-208ENST00000550280 LNPKQ9C0E8 428 aa13.59□□□□□ -0.23
SMARCD1-208ENST00000550280 PRRC2BQ5JSZ5 2229 aaKnown RBP13.59□□□□□ -0.23
SMARCD1-208ENST00000550280 LCHNA4D1U4 455 aa13.58□□□□□ -0.24
SMARCD1-208ENST00000550280 MMP3P08254 477 aa13.58□□□□□ -0.24
SMARCD1-208ENST00000550280 PTPN11Q06124 597 aaPredicted RBP13.58□□□□□ -0.24
SMARCD1-208ENST00000550280 CDC37Q16543 378 aaPredicted RBP13.58□□□□□ -0.24
SMARCD1-208ENST00000550280 TRAF7Q6Q0C0 670 aa13.58□□□□□ -0.24
SMARCD1-208ENST00000550280 MFSD6Q6ZSS7 791 aa13.58□□□□□ -0.24
SMARCD1-208ENST00000550280 HERC6Q8IVU3 1022 aa13.58□□□□□ -0.24
SMARCD1-208ENST00000550280 WNT8BQ93098 351 aa13.58□□□□□ -0.24
SMARCD1-208ENST00000550280 SLC9A7Q96T83 725 aa13.58□□□□□ -0.24
SMARCD1-208ENST00000550280 IL25Q9H293 177 aa13.58□□□□□ -0.24
SMARCD1-208ENST00000550280 GPHNQ9NQX3 736 aaPredicted RBP13.58□□□□□ -0.24
SMARCD1-208ENST00000550280 SDSP20132 328 aa13.57□□□□□ -0.24
SMARCD1-208ENST00000550280 RFC2P35250 354 aa13.57□□□□□ -0.24
SMARCD1-208ENST00000550280 DEFB103AP81534 67 aa13.57□□□□□ -0.24
SMARCD1-208ENST00000550280 HIC1Q14526 733 aa13.57□□□□□ -0.24
SMARCD1-208ENST00000550280 SLC35G1Q2M3R5 365 aa13.57□□□□□ -0.24
SMARCD1-208ENST00000550280 GPATCH4Q5T3I0 446 aaKnown RBP13.57□□□□□ -0.24
SMARCD1-208ENST00000550280 SESTD1Q86VW0 696 aa13.57□□□□□ -0.24
SMARCD1-208ENST00000550280 DGKHQ86XP1 1220 aa13.57□□□□□ -0.24
SMARCD1-208ENST00000550280 TICAM2Q86XR7 235 aa13.57□□□□□ -0.24
SMARCD1-208ENST00000550280 ADGRF4Q8IZF3 695 aa13.57□□□□□ -0.24
SMARCD1-208ENST00000550280 PNMA1Q8ND90 353 aa13.57□□□□□ -0.24
SMARCD1-208ENST00000550280 PHOSPHO2Q8TCD6 241 aa13.57□□□□□ -0.24
SMARCD1-208ENST00000550280 ANKS1AQ92625 1134 aa13.57□□□□□ -0.24
SMARCD1-208ENST00000550280 BDP1A6H8Y1 2624 aa13.57□□□□□ -0.24
SMARCD1-208ENST00000550280 KPNA6O60684 536 aa13.56□□□□□ -0.24
SMARCD1-208ENST00000550280 PPP1R11O60927 126 aaPredicted RBP13.56□□□□□ -0.24
SMARCD1-208ENST00000550280 NBNO60934 754 aa13.56□□□□□ -0.24
SMARCD1-208ENST00000550280 KDM4AO75164 1064 aa13.56□□□□□ -0.24
SMARCD1-208ENST00000550280 RGS20O76081 388 aa13.56□□□□□ -0.24
SMARCD1-208ENST00000550280 PCP11498 1178 aaKnown RBP13.56□□□□□ -0.24
SMARCD1-208ENST00000550280 WDR5P61964 334 aaKnown RBP13.56□□□□□ -0.24
SMARCD1-208ENST00000550280 RBL2Q08999 1139 aa13.56□□□□□ -0.24
SMARCD1-208ENST00000550280 GRB10Q13322 594 aa13.56□□□□□ -0.24
SMARCD1-208ENST00000550280 MBTPS1Q14703 1052 aa13.56□□□□□ -0.24
SMARCD1-208ENST00000550280 PTGISQ16647 500 aa13.56□□□□□ -0.24
SMARCD1-208ENST00000550280 TRIM71Q2Q1W2 868 aaKnown RBP13.56□□□□□ -0.24
SMARCD1-208ENST00000550280 QRICH1Q2TAL8 776 aa13.56□□□□□ -0.24
SMARCD1-208ENST00000550280 SEPT14Q6ZU15 432 aa13.56□□□□□ -0.24
SMARCD1-208ENST00000550280 PLEKHM2Q8IWE5 1019 aa13.56□□□□□ -0.24
SMARCD1-208ENST00000550280 SMC5Q8IY18 1101 aa13.56□□□□□ -0.24
SMARCD1-208ENST00000550280 ENAHQ8N8S7 591 aaPredicted RBP13.56□□□□□ -0.24
SMARCD1-208ENST00000550280 ARNTL2Q8WYA1 636 aa13.56□□□□□ -0.24
SMARCD1-208ENST00000550280 RILPL2Q969X0 211 aa13.56□□□□□ -0.24
SMARCD1-208ENST00000550280 JMJD4Q9H9V9 463 aa13.56□□□□□ -0.24
SMARCD1-208ENST00000550280 PNMA2Q9UL42 364 aa13.56□□□□□ -0.24
SMARCD1-208ENST00000550280 RAD50Q92878 1312 aa13.56□□□□□ -0.24
SMARCD1-208ENST00000550280 TRIM6-TRIM34B2RNG4 842 aa13.55□□□□□ -0.24
SMARCD1-208ENST00000550280 B4E1Z4 1266 aa13.55□□□□□ -0.24
SMARCD1-208ENST00000550280 GH1P01241 217 aa13.55□□□□□ -0.24
SMARCD1-208ENST00000550280 CXCL10P02778 98 aa13.55□□□□□ -0.24
SMARCD1-208ENST00000550280 ACTN1P12814 892 aa13.55□□□□□ -0.24
SMARCD1-208ENST00000550280 CHMP4BP1P59074 171 aa13.55□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms