RNA–Protein interactions for RNA: ENST00000546869.1

DDX54-203, Transcript of DEAD-box helicase 54, humanhuman

TSL 3

Gene DDX54, Length 420 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX54-203ENST00000546869 PLXNA1Q9UIW2 1896 aa16.65■□□□□ 0.26
DDX54-203ENST00000546869 RBM47A0AV96 593 aaKnown RBP16.65■□□□□ 0.26
DDX54-203ENST00000546869 POTEFA5A3E0 1075 aa16.65■□□□□ 0.26
DDX54-203ENST00000546869 MYCP01106 439 aaPredicted RBP16.65■□□□□ 0.26
DDX54-203ENST00000546869 AKR1A1P14550 325 aa16.65■□□□□ 0.26
DDX54-203ENST00000546869 NAPAP54920 295 aa16.65■□□□□ 0.26
DDX54-203ENST00000546869 TYW1BQ6NUM6 668 aa16.65■□□□□ 0.26
DDX54-203ENST00000546869 ANKLE1Q8NAG6 615 aa16.65■□□□□ 0.26
DDX54-203ENST00000546869 GPKOWQ92917 476 aaPredicted RBP eCLIP16.65■□□□□ 0.26
DDX54-203ENST00000546869 ZMYND12Q9H0C1 365 aa16.65■□□□□ 0.26
DDX54-203ENST00000546869 PXMP2Q9NR77 195 aa16.65■□□□□ 0.26
DDX54-203ENST00000546869 SH2B1Q9NRF2 756 aaPredicted RBP16.65■□□□□ 0.26
DDX54-203ENST00000546869 FRMPD4Q14CM0 1322 aa16.65■□□□□ 0.26
DDX54-203ENST00000546869 STK36Q9NRP7 1315 aa16.65■□□□□ 0.26
DDX54-203ENST00000546869 MYH6P13533 1939 aa16.64■□□□□ 0.26
DDX54-203ENST00000546869 SMCO2A6NFE2 343 aa16.64■□□□□ 0.25
DDX54-203ENST00000546869 CTDNEP1O95476 244 aa16.64■□□□□ 0.25
DDX54-203ENST00000546869 CNGA1P29973 690 aa16.64■□□□□ 0.25
DDX54-203ENST00000546869 HOXA13P31271 388 aaPredicted RBP16.64■□□□□ 0.25
DDX54-203ENST00000546869 MCM2P49736 904 aa16.64■□□□□ 0.25
DDX54-203ENST00000546869 STXBP2Q15833 593 aa16.64■□□□□ 0.25
DDX54-203ENST00000546869 IFFO2Q5TF58 517 aa16.64■□□□□ 0.25
DDX54-203ENST00000546869 ARHGEF16Q5VV41 709 aa16.64■□□□□ 0.25
DDX54-203ENST00000546869 MCTP2Q6DN12 878 aa16.64■□□□□ 0.25
DDX54-203ENST00000546869 IQSEC1Q6DN90 963 aa16.64■□□□□ 0.25
DDX54-203ENST00000546869 TAPT1Q6NXT6 567 aa16.64■□□□□ 0.25
DDX54-203ENST00000546869 USP17L6PQ6QN14 398 aa16.64■□□□□ 0.25
DDX54-203ENST00000546869 VSIG10LQ86VR7 867 aa16.64■□□□□ 0.25
DDX54-203ENST00000546869 SMARCC2Q8TAQ2 1214 aa16.64■□□□□ 0.25
DDX54-203ENST00000546869 PDCD2LQ9BRP1 358 aa16.64■□□□□ 0.25
DDX54-203ENST00000546869 EIF3JO75822 258 aaKnown RBP16.63■□□□□ 0.25
DDX54-203ENST00000546869 LARGE1O95461 756 aa16.63■□□□□ 0.25
DDX54-203ENST00000546869 FOSP01100 380 aaPredicted RBP16.63■□□□□ 0.25
DDX54-203ENST00000546869 NR3C2P08235 984 aa16.63■□□□□ 0.25
DDX54-203ENST00000546869 GNA11P29992 359 aa16.63■□□□□ 0.25
DDX54-203ENST00000546869 PDE4DQ08499 809 aa16.63■□□□□ 0.25
DDX54-203ENST00000546869 XRRA1Q6P2D8 792 aa16.63■□□□□ 0.25
DDX54-203ENST00000546869 CCDC148Q8NFR7 591 aa16.63■□□□□ 0.25
DDX54-203ENST00000546869 LLPHQ9BRT6 129 aaKnown RBP16.63■□□□□ 0.25
DDX54-203ENST00000546869 Q9Y3F1 56 aa16.63■□□□□ 0.25
DDX54-203ENST00000546869 RBBP6Q7Z6E9 1792 aaKnown RBP16.63■□□□□ 0.25
DDX54-203ENST00000546869 DUSP11O75319 330 aaKnown RBP16.62■□□□□ 0.25
DDX54-203ENST00000546869 STAM2O75886 525 aa16.62■□□□□ 0.25
DDX54-203ENST00000546869 TFRCP02786 760 aaKnown RBP16.62■□□□□ 0.25
DDX54-203ENST00000546869 EN2P19622 333 aaPredicted RBP16.62■□□□□ 0.25
DDX54-203ENST00000546869 CLK2P49760 499 aaKnown RBP16.62■□□□□ 0.25
DDX54-203ENST00000546869 ADCY7P51828 1080 aa16.62■□□□□ 0.25
DDX54-203ENST00000546869 SOX10P56693 466 aa16.62■□□□□ 0.25
DDX54-203ENST00000546869 NKX3-2P78367 333 aa16.62■□□□□ 0.25
DDX54-203ENST00000546869 PGM5Q15124 567 aa16.62■□□□□ 0.25
DDX54-203ENST00000546869 CCDC144BQ3MJ40 725 aa16.62■□□□□ 0.25
DDX54-203ENST00000546869 NECAB1Q8N987 351 aa16.62■□□□□ 0.25
DDX54-203ENST00000546869 WASF1Q92558 559 aa16.62■□□□□ 0.25
DDX54-203ENST00000546869 SHISA4Q96DD7 197 aa16.62■□□□□ 0.25
DDX54-203ENST00000546869 C6orf50Q9HD87 102 aa16.62■□□□□ 0.25
DDX54-203ENST00000546869 ZHX1Q9UKY1 873 aaPredicted RBP16.62■□□□□ 0.25
DDX54-203ENST00000546869 LCTP09848 1927 aa16.62■□□□□ 0.25
DDX54-203ENST00000546869 RARBP10826 455 aa16.61■□□□□ 0.25
DDX54-203ENST00000546869 EIF2AK2P19525 551 aaKnown RBP16.61■□□□□ 0.25
DDX54-203ENST00000546869 AP3B2Q13367 1082 aa16.61■□□□□ 0.25
DDX54-203ENST00000546869 GALNT17Q6IS24 598 aa16.61■□□□□ 0.25
DDX54-203ENST00000546869 NOL8Q76FK4 1167 aaKnown RBP16.61■□□□□ 0.25
DDX54-203ENST00000546869 UBE2Q1Q7Z7E8 422 aa16.61■□□□□ 0.25
DDX54-203ENST00000546869 FCHSD1Q86WN1 690 aa16.61■□□□□ 0.25
DDX54-203ENST00000546869 ARRDC4Q8NCT1 418 aa16.61■□□□□ 0.25
DDX54-203ENST00000546869 NSUN7Q8NE18 718 aaKnown RBP16.61■□□□□ 0.25
DDX54-203ENST00000546869 BICD2Q8TD16 824 aa16.61■□□□□ 0.25
DDX54-203ENST00000546869 SPDYE3A6NKU9 549 aa16.6■□□□□ 0.25
DDX54-203ENST00000546869 NKRFO15226 690 aaKnown RBP eCLIP16.6■□□□□ 0.25
DDX54-203ENST00000546869 FDPSP14324 419 aaKnown RBP16.6■□□□□ 0.25
DDX54-203ENST00000546869 CCND2P30279 289 aa16.6■□□□□ 0.25
DDX54-203ENST00000546869 TNFAIP2Q03169 654 aa16.6■□□□□ 0.25
DDX54-203ENST00000546869 ST3GAL1Q11201 340 aa16.6■□□□□ 0.25
DDX54-203ENST00000546869 DUSP28Q4G0W2 176 aa16.6■□□□□ 0.25
DDX54-203ENST00000546869 PCNX4Q63HM2 1172 aa16.6■□□□□ 0.25
DDX54-203ENST00000546869 KCNV1Q6PIU1 500 aa16.6■□□□□ 0.25
DDX54-203ENST00000546869 SCFD2Q8WU76 684 aa16.6■□□□□ 0.25
DDX54-203ENST00000546869 PCDHA6Q9UN73 950 aa16.6■□□□□ 0.25
DDX54-203ENST00000546869 GNEQ9Y223 722 aaKnown RBP16.6■□□□□ 0.25
DDX54-203ENST00000546869 PCDHA8Q9Y5H6 950 aa16.6■□□□□ 0.25
DDX54-203ENST00000546869 PPFIA3O75145 1194 aa16.59■□□□□ 0.25
DDX54-203ENST00000546869 TGFB3P10600 412 aa16.59■□□□□ 0.25
DDX54-203ENST00000546869 XBP1P17861 261 aa16.59■□□□□ 0.25
DDX54-203ENST00000546869 MNX1P50219 401 aaPredicted RBP16.59■□□□□ 0.25
DDX54-203ENST00000546869 GJA9P57773 515 aa16.59■□□□□ 0.25
DDX54-203ENST00000546869 EEPD1Q7L9B9 569 aa16.59■□□□□ 0.25
DDX54-203ENST00000546869 FBXO16Q8IX29 292 aaPredicted RBP16.59■□□□□ 0.25
DDX54-203ENST00000546869 DAGLBQ8NCG7 672 aa16.59■□□□□ 0.25
DDX54-203ENST00000546869 UPF3AQ9H1J1 476 aaKnown RBP16.59■□□□□ 0.25
DDX54-203ENST00000546869 EHMT1Q9H9B1 1298 aa16.59■□□□□ 0.25
DDX54-203ENST00000546869 PDGFCQ9NRA1 345 aa16.59■□□□□ 0.25
DDX54-203ENST00000546869 ORC3Q9UBD5 711 aaPredicted RBP16.59■□□□□ 0.25
DDX54-203ENST00000546869 DDX49Q9Y6V7 483 aaKnown RBP16.59■□□□□ 0.25
DDX54-203ENST00000546869 KIAA0100Q14667 2235 aaKnown RBP16.59■□□□□ 0.25
DDX54-203ENST00000546869 ADAMTS4O75173 837 aa16.58■□□□□ 0.24
DDX54-203ENST00000546869 RGS20O76081 388 aa16.58■□□□□ 0.24
DDX54-203ENST00000546869 SMPD1P17405 629 aa16.58■□□□□ 0.24
DDX54-203ENST00000546869 CST5P28325 142 aaPredicted RBP16.58■□□□□ 0.24
DDX54-203ENST00000546869 ADCYAP1R1P41586 468 aa16.58■□□□□ 0.24
DDX54-203ENST00000546869 TTLL4Q14679 1199 aa16.58■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms