RNA–Protein interactions for RNA: ENST00000543633.5

VPS33A-208, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 5

Gene VPS33A, Length 2,019 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-208ENST00000543633 PRDX5P30044 214 aa15.26■□□□□ 0.03
VPS33A-208ENST00000543633 EPHB4P54760 987 aa15.26■□□□□ 0.03
VPS33A-208ENST00000543633 LRRC63Q05C16 580 aa15.26■□□□□ 0.03
VPS33A-208ENST00000543633 TXNRD1Q16881 649 aa15.26■□□□□ 0.03
VPS33A-208ENST00000543633 VWA3BQ502W6 1294 aa15.26■□□□□ 0.03
VPS33A-208ENST00000543633 GLE1Q53GS7 698 aaKnown RBP15.26■□□□□ 0.03
VPS33A-208ENST00000543633 C3orf67Q6ZVT6 689 aa15.26■□□□□ 0.03
VPS33A-208ENST00000543633 NEK8Q86SG6 692 aa15.26■□□□□ 0.03
VPS33A-208ENST00000543633 GUF1Q8N442 669 aaKnown RBP15.26■□□□□ 0.03
VPS33A-208ENST00000543633 SH3GL2Q99962 352 aa15.26■□□□□ 0.03
VPS33A-208ENST00000543633 NYXQ9GZU5 481 aa15.26■□□□□ 0.03
VPS33A-208ENST00000543633 ZNF287Q9HBT7 754 aa15.26■□□□□ 0.03
VPS33A-208ENST00000543633 C6orf50Q9HD87 102 aa15.26■□□□□ 0.03
VPS33A-208ENST00000543633 PCDHA13Q9Y5I0 950 aa15.26■□□□□ 0.03
VPS33A-208ENST00000543633 CNTNAP4Q9C0A0 1308 aa15.26■□□□□ 0.03
VPS33A-208ENST00000543633 TAF1LQ8IZX4 1826 aa15.26■□□□□ 0.03
VPS33A-208ENST00000543633 CDK5RAP2Q96SN8 1893 aa15.25■□□□□ 0.03
VPS33A-208ENST00000543633 ATAD5Q96QE3 1844 aa15.25■□□□□ 0.03
VPS33A-208ENST00000543633 SSU72P8A0A1W2PR75 194 aa15.25■□□□□ 0.03
VPS33A-208ENST00000543633 AGPSO00116 658 aa15.25■□□□□ 0.03
VPS33A-208ENST00000543633 ZNF263O14978 683 aa15.25■□□□□ 0.03
VPS33A-208ENST00000543633 CYTH3O43739 400 aa15.25■□□□□ 0.03
VPS33A-208ENST00000543633 OPA1O60313 960 aa15.25■□□□□ 0.03
VPS33A-208ENST00000543633 EPB41P11171 864 aaKnown RBP15.25■□□□□ 0.03
VPS33A-208ENST00000543633 GGCXP38435 758 aa15.25■□□□□ 0.03
VPS33A-208ENST00000543633 KIF11P52732 1056 aa15.25■□□□□ 0.03
VPS33A-208ENST00000543633 GSTO1P78417 241 aa15.25■□□□□ 0.03
VPS33A-208ENST00000543633 STK4Q13043 487 aa15.25■□□□□ 0.03
VPS33A-208ENST00000543633 PPFIA1Q13136 1202 aa15.25■□□□□ 0.03
VPS33A-208ENST00000543633 CCDC96Q2M329 555 aa15.25■□□□□ 0.03
VPS33A-208ENST00000543633 SLC35G1Q2M3R5 365 aa15.25■□□□□ 0.03
VPS33A-208ENST00000543633 FAM196AQ6ZSG2 479 aa15.25■□□□□ 0.03
VPS33A-208ENST00000543633 UNC13DQ70J99 1090 aa15.25■□□□□ 0.03
VPS33A-208ENST00000543633 DZIP1Q86YF9 867 aaKnown RBP15.25■□□□□ 0.03
VPS33A-208ENST00000543633 EFCAB13Q8IY85 973 aa15.25■□□□□ 0.03
VPS33A-208ENST00000543633 PPM1EQ8WY54 764 aa15.25■□□□□ 0.03
VPS33A-208ENST00000543633 CELF1Q92879 486 aaKnown RBP15.25■□□□□ 0.03
VPS33A-208ENST00000543633 CAVIN3Q969G5 261 aa15.25■□□□□ 0.03
VPS33A-208ENST00000543633 LRRC27Q9C0I9 530 aa15.25■□□□□ 0.03
VPS33A-208ENST00000543633 NUCKS1Q9H1E3 243 aaKnown RBP15.25■□□□□ 0.03
VPS33A-208ENST00000543633 RNF216Q9NWF9 866 aaPredicted RBP15.25■□□□□ 0.03
VPS33A-208ENST00000543633 LRWD1Q9UFC0 647 aa15.25■□□□□ 0.03
VPS33A-208ENST00000543633 IRS2Q9Y4H2 1338 aa15.24■□□□□ 0.03
VPS33A-208ENST00000543633 MACROD2A1Z1Q3 448 aa15.24■□□□□ 0.03
VPS33A-208ENST00000543633 GOLGA6CA6NDK9 693 aa15.24■□□□□ 0.03
VPS33A-208ENST00000543633 TRIM66O15016 1216 aa15.24■□□□□ 0.03
VPS33A-208ENST00000543633 CPP00450 1065 aa15.24■□□□□ 0.03
VPS33A-208ENST00000543633 USP17L8P0C7I0 530 aa15.24■□□□□ 0.03
VPS33A-208ENST00000543633 GOLGA6DP0CG33 693 aa15.24■□□□□ 0.03
VPS33A-208ENST00000543633 RPS8P62241 208 aaKnown RBP15.24■□□□□ 0.03
VPS33A-208ENST00000543633 C2orf54Q08AI8 447 aa15.24■□□□□ 0.03
VPS33A-208ENST00000543633 MAPK8IP2Q13387 824 aaPredicted RBP15.24■□□□□ 0.03
VPS33A-208ENST00000543633 DNAJC21Q5F1R6 531 aaKnown RBP15.24■□□□□ 0.03
VPS33A-208ENST00000543633 ALS2CLQ60I27 953 aa15.24■□□□□ 0.03
VPS33A-208ENST00000543633 RNF10Q8N5U6 811 aaKnown RBP15.24■□□□□ 0.03
VPS33A-208ENST00000543633 FBXO41Q8TF61 875 aa15.24■□□□□ 0.03
VPS33A-208ENST00000543633 NDST4Q9H3R1 872 aa15.24■□□□□ 0.03
VPS33A-208ENST00000543633 GOLGA6AQ9NYA3 693 aa15.24■□□□□ 0.03
VPS33A-208ENST00000543633 ARHGAP20Q9P2F6 1191 aa15.24■□□□□ 0.03
VPS33A-208ENST00000543633 TSPY3P0CV98 308 aa15.24■□□□□ 0.03
VPS33A-208ENST00000543633 TSPY8P0CW00 308 aa15.24■□□□□ 0.03
VPS33A-208ENST00000543633 MYBL2P10244 700 aa15.24■□□□□ 0.03
VPS33A-208ENST00000543633 KLK7P49862 253 aa15.24■□□□□ 0.03
VPS33A-208ENST00000543633 PPP4CP60510 307 aa15.24■□□□□ 0.03
VPS33A-208ENST00000543633 APBA1Q02410 837 aa15.24■□□□□ 0.03
VPS33A-208ENST00000543633 PSMD2Q13200 908 aa15.24■□□□□ 0.03
VPS33A-208ENST00000543633 RC3H1Q5TC82 1133 aaKnown RBP15.24■□□□□ 0.03
VPS33A-208ENST00000543633 SV2BQ7L1I2 683 aa15.24■□□□□ 0.03
VPS33A-208ENST00000543633 PROM2Q8N271 834 aa15.24■□□□□ 0.03
VPS33A-208ENST00000543633 KIAA0895Q8NCT3 520 aa15.24■□□□□ 0.03
VPS33A-208ENST00000543633 SPATA4Q8NEY3 305 aa15.24■□□□□ 0.03
VPS33A-208ENST00000543633 OSBPL9Q96SU4 736 aa15.24■□□□□ 0.03
VPS33A-208ENST00000543633 SEMA6BQ9H3T3 888 aa15.24■□□□□ 0.03
VPS33A-208ENST00000543633 MKNK2Q9HBH9 465 aa15.24■□□□□ 0.03
VPS33A-208ENST00000543633 RGS17Q9UGC6 210 aaPredicted RBP15.24■□□□□ 0.03
VPS33A-208ENST00000543633 TFR2Q9UP52 801 aa15.24■□□□□ 0.03
VPS33A-208ENST00000543633 WTIPA6NIX2 430 aaPredicted RBP15.23■□□□□ 0.03
VPS33A-208ENST00000543633 ZNF185O15231 689 aa15.23■□□□□ 0.03
VPS33A-208ENST00000543633 FXR2P51116 673 aaKnown RBP eCLIP15.23■□□□□ 0.03
VPS33A-208ENST00000543633 NAPAP54920 295 aa15.23■□□□□ 0.03
VPS33A-208ENST00000543633 CYP27A1Q02318 531 aa15.23■□□□□ 0.03
VPS33A-208ENST00000543633 WDR66Q8TBY9 1149 aa15.23■□□□□ 0.03
VPS33A-208ENST00000543633 MMTAG2Q9BU76 263 aaKnown RBP15.23■□□□□ 0.03
VPS33A-208ENST00000543633 RIC8AQ9NPQ8 531 aa15.23■□□□□ 0.03
VPS33A-208ENST00000543633 RSPH14Q9UHP6 348 aa15.23■□□□□ 0.03
VPS33A-208ENST00000543633 CCNL1Q9UK58 526 aaPredicted RBP15.23■□□□□ 0.03
VPS33A-208ENST00000543633 CAPN6Q9Y6Q1 641 aa15.23■□□□□ 0.03
VPS33A-208ENST00000543633 SNED1Q8TER0 1413 aa15.23■□□□□ 0.03
VPS33A-208ENST00000543633 RBAK-RBAKDNI3L0D1 243 aa15.22■□□□□ 0.03
VPS33A-208ENST00000543633 PAFAH1B1P43034 410 aa15.22■□□□□ 0.03
VPS33A-208ENST00000543633 SEPT2Q15019 361 aa15.22■□□□□ 0.03
VPS33A-208ENST00000543633 FOXR1Q6PIV2 292 aa15.22■□□□□ 0.03
VPS33A-208ENST00000543633 ZNF444Q8N0Y2 327 aaPredicted RBP15.22■□□□□ 0.03
VPS33A-208ENST00000543633 SYN2Q92777 582 aaPredicted RBP15.22■□□□□ 0.03
VPS33A-208ENST00000543633 TMEM47Q9BQJ4 181 aa15.22■□□□□ 0.03
VPS33A-208ENST00000543633 DEF6Q9H4E7 631 aa15.22■□□□□ 0.03
VPS33A-208ENST00000543633 STIM2Q9P246 746 aa15.22■□□□□ 0.03
VPS33A-208ENST00000543633 DUSP10Q9Y6W6 482 aa15.22■□□□□ 0.03
VPS33A-208ENST00000543633 CCNT1O60563 726 aaKnown RBP15.22■□□□□ 0.03
VPS33A-208ENST00000543633 BAG3O95817 575 aa15.22■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms