RNA–Protein interactions for RNA: ENST00000542274.5

CDH3-203, Transcript of cadherin 3, humanhuman

TSL 2

Gene CDH3, Length 2,746 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-203ENST00000542274 KIF28PB7ZC32 967 aa12.3□□□□□ -0.44
CDH3-203ENST00000542274 WDHD1O75717 1129 aaPredicted RBP12.3□□□□□ -0.44
CDH3-203ENST00000542274 GFPT2O94808 682 aa12.3□□□□□ -0.44
CDH3-203ENST00000542274 EVCP57679 992 aa12.3□□□□□ -0.44
CDH3-203ENST00000542274 DYNLL1P63167 89 aaKnown RBP12.3□□□□□ -0.44
CDH3-203ENST00000542274 GRAPQ13588 217 aa12.3□□□□□ -0.44
CDH3-203ENST00000542274 CCDC93Q567U6 631 aa12.3□□□□□ -0.44
CDH3-203ENST00000542274 KANK3Q6NY19 840 aa12.3□□□□□ -0.44
CDH3-203ENST00000542274 VPS37DQ86XT2 251 aa12.3□□□□□ -0.44
CDH3-203ENST00000542274 DRC7Q8IY82 874 aa12.3□□□□□ -0.44
CDH3-203ENST00000542274 CMTR1Q8N1G2 835 aaKnown RBP12.3□□□□□ -0.44
CDH3-203ENST00000542274 GRAPLQ8TC17 118 aaPredicted RBP12.3□□□□□ -0.44
CDH3-203ENST00000542274 ZNF384Q8TF68 577 aa12.3□□□□□ -0.44
CDH3-203ENST00000542274 DTNBP1Q96EV8 351 aa12.3□□□□□ -0.44
CDH3-203ENST00000542274 FAM84BQ96KN1 310 aaPredicted RBP12.3□□□□□ -0.44
CDH3-203ENST00000542274 SPOCK3Q9BQ16 436 aa12.3□□□□□ -0.44
CDH3-203ENST00000542274 UBE2OQ9C0C9 1292 aaKnown RBP12.3□□□□□ -0.44
CDH3-203ENST00000542274 ZSWIM5Q9P217 1185 aa12.3□□□□□ -0.44
CDH3-203ENST00000542274 SH2B2O14492 632 aaPredicted RBP12.29□□□□□ -0.44
CDH3-203ENST00000542274 LDHAP00338 332 aaKnown RBP12.29□□□□□ -0.44
CDH3-203ENST00000542274 MMP10P09238 476 aa12.29□□□□□ -0.44
CDH3-203ENST00000542274 CYP7A1P22680 504 aa12.29□□□□□ -0.44
CDH3-203ENST00000542274 UBE4AQ14139 1066 aa12.29□□□□□ -0.44
CDH3-203ENST00000542274 GALNT15Q8N3T1 639 aa12.29□□□□□ -0.44
CDH3-203ENST00000542274 CCDC82Q8N4S0 544 aa12.29□□□□□ -0.44
CDH3-203ENST00000542274 TRIM58Q8NG06 486 aa12.29□□□□□ -0.44
CDH3-203ENST00000542274 ZFAND2BQ8WV99 257 aa12.29□□□□□ -0.44
CDH3-203ENST00000542274 SH3GL1Q99961 368 aa12.29□□□□□ -0.44
CDH3-203ENST00000542274 NUP62CLQ9H1M0 184 aa12.29□□□□□ -0.44
CDH3-203ENST00000542274 GOLPH3LQ9H4A5 285 aa12.29□□□□□ -0.44
CDH3-203ENST00000542274 CACNA1SQ13698 1873 aa12.29□□□□□ -0.44
CDH3-203ENST00000542274 CPLX1O14810 134 aa12.29□□□□□ -0.44
CDH3-203ENST00000542274 FSBPO95073 299 aa12.29□□□□□ -0.44
CDH3-203ENST00000542274 FAM76AQ8TAV0 307 aa12.29□□□□□ -0.44
CDH3-203ENST00000542274 PDGFDQ9GZP0 370 aaPredicted RBP12.29□□□□□ -0.44
CDH3-203ENST00000542274 ZNHIT6Q9NWK9 470 aaKnown RBP12.29□□□□□ -0.44
CDH3-203ENST00000542274 CORO1CQ9ULV4 474 aaPredicted RBP12.29□□□□□ -0.44
CDH3-203ENST00000542274 ANGEL1Q9UNK9 670 aaKnown RBP12.29□□□□□ -0.44
CDH3-203ENST00000542274 ZNF804BA4D1E1 1349 aa12.28□□□□□ -0.44
CDH3-203ENST00000542274 B4DLN1 442 aa12.28□□□□□ -0.44
CDH3-203ENST00000542274 PDHBP11177 359 aa12.28□□□□□ -0.44
CDH3-203ENST00000542274 NAA16Q6N069 864 aaPredicted RBP12.28□□□□□ -0.44
CDH3-203ENST00000542274 NEK10Q6ZWH5 1172 aa12.28□□□□□ -0.44
CDH3-203ENST00000542274 SLC15A3Q8IY34 581 aa12.28□□□□□ -0.44
CDH3-203ENST00000542274 IGDCC4Q8TDY8 1250 aa12.28□□□□□ -0.44
CDH3-203ENST00000542274 TRPC6Q9Y210 931 aa12.28□□□□□ -0.44
CDH3-203ENST00000542274 PRELID1Q9Y255 219 aa12.28□□□□□ -0.44
CDH3-203ENST00000542274 MINDY4BA8MYZ0 360 aa12.28□□□□□ -0.44
CDH3-203ENST00000542274 SCG2P13521 617 aa12.28□□□□□ -0.44
CDH3-203ENST00000542274 MATR3P43243 847 aaKnown RBP eCLIP12.28□□□□□ -0.44
CDH3-203ENST00000542274 APOA5Q6Q788 366 aa12.28□□□□□ -0.44
CDH3-203ENST00000542274 OLFM4Q6UX06 510 aa12.28□□□□□ -0.44
CDH3-203ENST00000542274 CACTINQ8WUQ7 758 aaKnown RBP12.28□□□□□ -0.44
CDH3-203ENST00000542274 C8orf76Q96K31 380 aa12.28□□□□□ -0.44
CDH3-203ENST00000542274 GALNT8Q9NY28 637 aa12.28□□□□□ -0.44
CDH3-203ENST00000542274 KLHL42Q9P2K6 505 aa12.28□□□□□ -0.44
CDH3-203ENST00000542274 PHF24Q9UPV7 400 aa12.28□□□□□ -0.44
CDH3-203ENST00000542274 CLIC4Q9Y696 253 aa12.28□□□□□ -0.44
CDH3-203ENST00000542274 N4BP1O75113 896 aaKnown RBP12.27□□□□□ -0.44
CDH3-203ENST00000542274 METAP2P50579 478 aaKnown RBP eCLIP12.27□□□□□ -0.44
CDH3-203ENST00000542274 SNCBQ16143 134 aa12.27□□□□□ -0.44
CDH3-203ENST00000542274 CAVIN4Q5BKX8 364 aa12.27□□□□□ -0.44
CDH3-203ENST00000542274 GJC2Q5T442 439 aaPredicted RBP12.27□□□□□ -0.44
CDH3-203ENST00000542274 AGAP9Q5VTM2 703 aa12.27□□□□□ -0.44
CDH3-203ENST00000542274 DPY19L2Q6NUT2 758 aa12.27□□□□□ -0.44
CDH3-203ENST00000542274 WDR75Q8IWA0 830 aaKnown RBP12.27□□□□□ -0.44
CDH3-203ENST00000542274 FBXL16Q8N461 479 aa12.27□□□□□ -0.44
CDH3-203ENST00000542274 ENOX1Q8TC92 643 aaKnown RBP12.27□□□□□ -0.44
CDH3-203ENST00000542274 HOOK2Q96ED9 719 aa12.27□□□□□ -0.44
CDH3-203ENST00000542274 CAMKK2Q96RR4 588 aa12.27□□□□□ -0.44
CDH3-203ENST00000542274 EPC1Q9H2F5 836 aa12.27□□□□□ -0.44
CDH3-203ENST00000542274 TNMDQ9H2S6 317 aa12.27□□□□□ -0.44
CDH3-203ENST00000542274 LY9Q9HBG7 655 aa12.27□□□□□ -0.44
CDH3-203ENST00000542274 CROTQ9UKG9 612 aa12.27□□□□□ -0.44
CDH3-203ENST00000542274 SLC26A4O43511 780 aa12.27□□□□□ -0.45
CDH3-203ENST00000542274 RANBP6O60518 1105 aaKnown RBP12.27□□□□□ -0.45
CDH3-203ENST00000542274 USP11P51784 963 aa12.27□□□□□ -0.45
CDH3-203ENST00000542274 GPSM2P81274 684 aa12.27□□□□□ -0.45
CDH3-203ENST00000542274 CBX3Q13185 183 aa12.27□□□□□ -0.45
CDH3-203ENST00000542274 TMEM67Q5HYA8 995 aa12.27□□□□□ -0.45
CDH3-203ENST00000542274 CCDC68Q9H2F9 335 aa12.27□□□□□ -0.45
CDH3-203ENST00000542274 TAOK3Q9H2K8 898 aa12.27□□□□□ -0.45
CDH3-203ENST00000542274 FAM217BQ9NTX9 383 aaPredicted RBP12.27□□□□□ -0.45
CDH3-203ENST00000542274 MAP2K7O14733 419 aa12.26□□□□□ -0.45
CDH3-203ENST00000542274 PRDM1O75626 825 aa12.26□□□□□ -0.45
CDH3-203ENST00000542274 BBOX1O75936 387 aa12.26□□□□□ -0.45
CDH3-203ENST00000542274 LINGO3P0C6S8 592 aa12.26□□□□□ -0.45
CDH3-203ENST00000542274 MAP3K11Q16584 847 aa12.26□□□□□ -0.45
CDH3-203ENST00000542274 MAP7D1Q3KQU3 841 aa12.26□□□□□ -0.45
CDH3-203ENST00000542274 CRY2Q49AN0 593 aa12.26□□□□□ -0.45
CDH3-203ENST00000542274 LUZP1Q86V48 1076 aa12.26□□□□□ -0.45
CDH3-203ENST00000542274 CCDC170Q8IYT3 715 aa12.26□□□□□ -0.45
CDH3-203ENST00000542274 NLGN1Q8N2Q7 840 aa12.26□□□□□ -0.45
CDH3-203ENST00000542274 FBXW7Q969H0 707 aa12.26□□□□□ -0.45
CDH3-203ENST00000542274 OXCT2Q9BYC2 517 aaPredicted RBP12.26□□□□□ -0.45
CDH3-203ENST00000542274 ANKRD2Q9GZV1 360 aa12.26□□□□□ -0.45
CDH3-203ENST00000542274 KLF15Q9UIH9 416 aa12.26□□□□□ -0.45
CDH3-203ENST00000542274 PAIP2BQ9ULR5 123 aaKnown RBP12.26□□□□□ -0.45
CDH3-203ENST00000542274 IFIT3O14879 490 aaKnown RBP12.26□□□□□ -0.45
CDH3-203ENST00000542274 SMIM24O75264 130 aa12.26□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms