RNA–Protein interactions for RNA: ENST00000541770.1

CLSTN3-212, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 568 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-212ENST00000541770 TSPY8P0CW00 308 aa10.19□□□□□ -0.78
CLSTN3-212ENST00000541770 NKX3-2P78367 333 aa10.19□□□□□ -0.78
CLSTN3-212ENST00000541770 NECTIN1Q15223 517 aa10.19□□□□□ -0.78
CLSTN3-212ENST00000541770 IQSEC1Q6DN90 963 aa10.19□□□□□ -0.78
CLSTN3-212ENST00000541770 NSMFQ6X4W1 530 aa10.19□□□□□ -0.78
CLSTN3-212ENST00000541770 MFSD6Q6ZSS7 791 aa10.19□□□□□ -0.78
CLSTN3-212ENST00000541770 RETREG2Q8NC44 543 aa10.19□□□□□ -0.78
CLSTN3-212ENST00000541770 CHURC1Q8WUH1 139 aa10.19□□□□□ -0.78
CLSTN3-212ENST00000541770 HLA-CQ95604 372 aa10.19□□□□□ -0.78
CLSTN3-212ENST00000541770 PURBQ96QR8 312 aaKnown RBP10.19□□□□□ -0.78
CLSTN3-212ENST00000541770 SLC9A7Q96T83 725 aa10.19□□□□□ -0.78
CLSTN3-212ENST00000541770 MTMR4Q9NYA4 1195 aa10.19□□□□□ -0.78
CLSTN3-212ENST00000541770 TRIP12Q14669 1992 aaPredicted RBP10.19□□□□□ -0.78
CLSTN3-212ENST00000541770 LAMA4Q16363 1823 aa10.19□□□□□ -0.78
CLSTN3-212ENST00000541770 ZNF536O15090 1300 aa10.18□□□□□ -0.78
CLSTN3-212ENST00000541770 IGKV6D-41A0A0C4DH26 115 aa10.18□□□□□ -0.78
CLSTN3-212ENST00000541770 TSPY2A6NKD2 308 aa10.18□□□□□ -0.78
CLSTN3-212ENST00000541770 TLL1O43897 1013 aa10.18□□□□□ -0.78
CLSTN3-212ENST00000541770 FDX1P10109 184 aa10.18□□□□□ -0.78
CLSTN3-212ENST00000541770 MCCP23508 829 aa10.18□□□□□ -0.78
CLSTN3-212ENST00000541770 SLC1A4P43007 532 aa10.18□□□□□ -0.78
CLSTN3-212ENST00000541770 TFAP4Q01664 338 aa10.18□□□□□ -0.78
CLSTN3-212ENST00000541770 TAP1Q03518 808 aa10.18□□□□□ -0.78
CLSTN3-212ENST00000541770 TKFCQ3LXA3 575 aa10.18□□□□□ -0.78
CLSTN3-212ENST00000541770 MUM1L1Q5H9M0 696 aa10.18□□□□□ -0.78
CLSTN3-212ENST00000541770 PPP4R3BQ5MIZ7 849 aa10.18□□□□□ -0.78
CLSTN3-212ENST00000541770 TAPT1Q6NXT6 567 aa10.18□□□□□ -0.78
CLSTN3-212ENST00000541770 KCTD1Q719H9 257 aa10.18□□□□□ -0.78
CLSTN3-212ENST00000541770 FAM160B2Q86V87 743 aa10.18□□□□□ -0.78
CLSTN3-212ENST00000541770 GMCL1P1Q8NEA9 526 aa10.18□□□□□ -0.78
CLSTN3-212ENST00000541770 NEDD1Q8NHV4 660 aa10.18□□□□□ -0.78
CLSTN3-212ENST00000541770 KHSRPQ92945 711 aaKnown RBP eCLIP10.18□□□□□ -0.78
CLSTN3-212ENST00000541770 MKL1Q969V6 931 aa10.18□□□□□ -0.78
CLSTN3-212ENST00000541770 CNNM2Q9H8M5 875 aa10.18□□□□□ -0.78
CLSTN3-212ENST00000541770 INCENPQ9NQS7 918 aa10.18□□□□□ -0.78
CLSTN3-212ENST00000541770 TCP11L1Q9NUJ3 509 aa10.18□□□□□ -0.78
CLSTN3-212ENST00000541770 POLR3EQ9NVU0 708 aa10.18□□□□□ -0.78
CLSTN3-212ENST00000541770 NOD1Q9Y239 953 aa10.18□□□□□ -0.78
CLSTN3-212ENST00000541770 PRRC2BQ5JSZ5 2229 aaKnown RBP10.18□□□□□ -0.78
CLSTN3-212ENST00000541770 RANBP6O60518 1105 aaKnown RBP10.17□□□□□ -0.78
CLSTN3-212ENST00000541770 ARHGEF15O94989 841 aa10.17□□□□□ -0.78
CLSTN3-212ENST00000541770 KCNJ6P48051 423 aa10.17□□□□□ -0.78
CLSTN3-212ENST00000541770 NOVP48745 357 aa10.17□□□□□ -0.78
CLSTN3-212ENST00000541770 CPT1AP50416 773 aa10.17□□□□□ -0.78
CLSTN3-212ENST00000541770 GRB10Q13322 594 aa10.17□□□□□ -0.78
CLSTN3-212ENST00000541770 TSGA10IPQ3SY00 556 aa10.17□□□□□ -0.78
CLSTN3-212ENST00000541770 RNF20Q5VTR2 975 aa10.17□□□□□ -0.78
CLSTN3-212ENST00000541770 CREB3L3Q68CJ9 461 aa10.17□□□□□ -0.78
CLSTN3-212ENST00000541770 ALYREFQ86V81 257 aaKnown RBP10.17□□□□□ -0.78
CLSTN3-212ENST00000541770 HERC6Q8IVU3 1022 aa10.17□□□□□ -0.78
CLSTN3-212ENST00000541770 OR6J1Q8NGC5 347 aa10.17□□□□□ -0.78
CLSTN3-212ENST00000541770 ESR2Q92731 530 aa10.17□□□□□ -0.78
CLSTN3-212ENST00000541770 VWCEQ96DN2 955 aa10.17□□□□□ -0.78
CLSTN3-212ENST00000541770 WDR11Q9BZH6 1224 aa10.17□□□□□ -0.78
CLSTN3-212ENST00000541770 KRT23Q9C075 422 aa10.17□□□□□ -0.78
CLSTN3-212ENST00000541770 VTA1Q9NP79 307 aa10.17□□□□□ -0.78
CLSTN3-212ENST00000541770 TOMM22Q9NS69 142 aa10.17□□□□□ -0.78
CLSTN3-212ENST00000541770 MTUS1Q9ULD2 1270 aa10.17□□□□□ -0.78
CLSTN3-212ENST00000541770 CCPG1Q9ULG6 757 aa10.17□□□□□ -0.78
CLSTN3-212ENST00000541770 SYNPO2Q9UMS6 1093 aa10.17□□□□□ -0.78
CLSTN3-212ENST00000541770 Q9Y3F1 56 aa10.17□□□□□ -0.78
CLSTN3-212ENST00000541770 NEDD4P46934 1319 aa10.16□□□□□ -0.78
CLSTN3-212ENST00000541770 PTPDC1A2A3K4 754 aa10.16□□□□□ -0.78
CLSTN3-212ENST00000541770 E7EWF7 191 aa10.16□□□□□ -0.78
CLSTN3-212ENST00000541770 SLC27A2O14975 620 aa10.16□□□□□ -0.78
CLSTN3-212ENST00000541770 IQCF3P0C7M6 154 aa10.16□□□□□ -0.78
CLSTN3-212ENST00000541770 POU3F3P20264 500 aaPredicted RBP10.16□□□□□ -0.78
CLSTN3-212ENST00000541770 RFC2P35250 354 aa10.16□□□□□ -0.78
CLSTN3-212ENST00000541770 PURAQ00577 322 aaKnown RBP10.16□□□□□ -0.78
CLSTN3-212ENST00000541770 TRDNQ13061 729 aa10.16□□□□□ -0.78
CLSTN3-212ENST00000541770 CCDC96Q2M329 555 aa10.16□□□□□ -0.78
CLSTN3-212ENST00000541770 NBPF20Q3BBV1 942 aa10.16□□□□□ -0.78
CLSTN3-212ENST00000541770 DUSP28Q4G0W2 176 aa10.16□□□□□ -0.78
CLSTN3-212ENST00000541770 BRDTQ58F21 947 aaPredicted RBP10.16□□□□□ -0.78
CLSTN3-212ENST00000541770 RRP12Q5JTH9 1297 aaKnown RBP10.16□□□□□ -0.78
CLSTN3-212ENST00000541770 SPRED2Q7Z698 418 aa10.16□□□□□ -0.78
CLSTN3-212ENST00000541770 TMCO2Q7Z6W1 182 aaPredicted RBP10.16□□□□□ -0.78
CLSTN3-212ENST00000541770 PHOSPHO2Q8TCD6 241 aa10.16□□□□□ -0.78
CLSTN3-212ENST00000541770 GDPD5Q8WTR4 605 aa10.16□□□□□ -0.78
CLSTN3-212ENST00000541770 KCNB2Q92953 911 aa10.16□□□□□ -0.78
CLSTN3-212ENST00000541770 UIMC1Q96RL1 719 aa10.16□□□□□ -0.78
CLSTN3-212ENST00000541770 MTG1Q9BT17 334 aaPredicted RBP10.16□□□□□ -0.78
CLSTN3-212ENST00000541770 ZBED2Q9BTP6 218 aa10.16□□□□□ -0.78
CLSTN3-212ENST00000541770 USP26Q9BXU7 913 aa10.16□□□□□ -0.78
CLSTN3-212ENST00000541770 CYP39A1Q9NYL5 469 aa10.16□□□□□ -0.78
CLSTN3-212ENST00000541770 PRR12Q9ULL5 1215 aa10.16□□□□□ -0.78
CLSTN3-212ENST00000541770 STX8Q9UNK0 236 aa10.16□□□□□ -0.78
CLSTN3-212ENST00000541770 ARIH1Q9Y4X5 557 aaPredicted RBP10.16□□□□□ -0.78
CLSTN3-212ENST00000541770 REV3LO60673 3130 aa10.16□□□□□ -0.78
CLSTN3-212ENST00000541770 SIP14410 1827 aa10.15□□□□□ -0.78
CLSTN3-212ENST00000541770 B4E1Z4 1266 aa10.15□□□□□ -0.78
CLSTN3-212ENST00000541770 GPR37L1O60883 481 aa10.15□□□□□ -0.78
CLSTN3-212ENST00000541770 KDM4AO75164 1064 aa10.15□□□□□ -0.78
CLSTN3-212ENST00000541770 CALML3P27482 149 aa10.15□□□□□ -0.78
CLSTN3-212ENST00000541770 HSPA4P34932 840 aa10.15□□□□□ -0.78
CLSTN3-212ENST00000541770 ALDH5A1P51649 535 aaPredicted RBP10.15□□□□□ -0.78
CLSTN3-212ENST00000541770 BFSP2Q13515 415 aa10.15□□□□□ -0.78
CLSTN3-212ENST00000541770 BAATQ14032 418 aaPredicted RBP10.15□□□□□ -0.78
CLSTN3-212ENST00000541770 C8orf34Q49A92 452 aa10.15□□□□□ -0.78
CLSTN3-212ENST00000541770 CCDC178Q5BJE1 867 aa10.15□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms