RNA–Protein interactions for RNA: ENST00000537706.5

USP28-205, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 1,900 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-205ENST00000537706 E9PSI1 815 aa10.99□□□□□ -0.65
USP28-205ENST00000537706 F5H6K3 240 aa10.99□□□□□ -0.65
USP28-205ENST00000537706 LMNAP02545 664 aaKnown RBP10.99□□□□□ -0.65
USP28-205ENST00000537706 CYP2D6P10635 497 aa10.99□□□□□ -0.65
USP28-205ENST00000537706 ATF7P17544 494 aaPredicted RBP10.99□□□□□ -0.65
USP28-205ENST00000537706 KLRC3Q07444 240 aa10.99□□□□□ -0.65
USP28-205ENST00000537706 COL9A2Q14055 689 aaPredicted RBP10.99□□□□□ -0.65
USP28-205ENST00000537706 PWP2Q15269 919 aaKnown RBP10.99□□□□□ -0.65
USP28-205ENST00000537706 ASTLQ6HA08 431 aaPredicted RBP10.99□□□□□ -0.65
USP28-205ENST00000537706 LIN28BQ6ZN17 250 aaKnown RBP eCLIP10.99□□□□□ -0.65
USP28-205ENST00000537706 SESTD1Q86VW0 696 aa10.99□□□□□ -0.65
USP28-205ENST00000537706 SMRP1Q8NCR6 262 aa10.99□□□□□ -0.65
USP28-205ENST00000537706 COL26A1Q96A83 441 aa10.99□□□□□ -0.65
USP28-205ENST00000537706 MSLNLQ96KJ4 702 aa10.99□□□□□ -0.65
USP28-205ENST00000537706 USP15Q9Y4E8 981 aaPredicted RBP10.99□□□□□ -0.65
USP28-205ENST00000537706 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP10.99□□□□□ -0.65
USP28-205ENST00000537706 NDUFB10O96000 172 aa10.98□□□□□ -0.65
USP28-205ENST00000537706 CHAMP1Q96JM3 812 aa10.98□□□□□ -0.65
USP28-205ENST00000537706 TRERF1Q96PN7 1200 aa10.98□□□□□ -0.65
USP28-205ENST00000537706 HAUS7Q99871 368 aa10.98□□□□□ -0.65
USP28-205ENST00000537706 API5Q9BZZ5 524 aaKnown RBP10.98□□□□□ -0.65
USP28-205ENST00000537706 NYAP2Q9P242 653 aa10.98□□□□□ -0.65
USP28-205ENST00000537706 PARP14Q460N5 1801 aa10.98□□□□□ -0.65
USP28-205ENST00000537706 FSD2A1L4K1 749 aa10.97□□□□□ -0.65
USP28-205ENST00000537706 B4DLN1 442 aa10.97□□□□□ -0.65
USP28-205ENST00000537706 C5orf67F2Z3F1 127 aa10.97□□□□□ -0.65
USP28-205ENST00000537706 UPP2O95045 317 aa10.97□□□□□ -0.65
USP28-205ENST00000537706 BMPR1AP36894 532 aa10.97□□□□□ -0.65
USP28-205ENST00000537706 MRPL12P52815 198 aaKnown RBP10.97□□□□□ -0.65
USP28-205ENST00000537706 PTK7Q13308 1070 aa10.97□□□□□ -0.65
USP28-205ENST00000537706 MTMR3Q13615 1198 aa10.97□□□□□ -0.65
USP28-205ENST00000537706 GPNMBQ14956 572 aa10.97□□□□□ -0.65
USP28-205ENST00000537706 TTF1Q15361 905 aaPredicted RBP10.97□□□□□ -0.65
USP28-205ENST00000537706 C16orf86Q6ZW13 317 aa10.97□□□□□ -0.65
USP28-205ENST00000537706 LRRC47Q8N1G4 583 aaKnown RBP10.97□□□□□ -0.65
USP28-205ENST00000537706 EFHBQ8N7U6 833 aa10.97□□□□□ -0.65
USP28-205ENST00000537706 TMEM105Q8N8V8 129 aa10.97□□□□□ -0.65
USP28-205ENST00000537706 SSH1Q8WYL5 1049 aa10.97□□□□□ -0.65
USP28-205ENST00000537706 SEPT8Q92599 483 aa10.97□□□□□ -0.65
USP28-205ENST00000537706 IL17RAQ96F46 866 aa10.97□□□□□ -0.65
USP28-205ENST00000537706 ATP8A2Q9NTI2 1148 aa10.97□□□□□ -0.65
USP28-205ENST00000537706 A6NJR5 290 aa10.97□□□□□ -0.65
USP28-205ENST00000537706 LINC01565O15544 149 aa10.97□□□□□ -0.65
USP28-205ENST00000537706 PDGFBP01127 241 aaPredicted RBP10.97□□□□□ -0.65
USP28-205ENST00000537706 SRGAP2BP0DMP2 458 aa10.97□□□□□ -0.65
USP28-205ENST00000537706 ALAS1P13196 640 aa10.97□□□□□ -0.65
USP28-205ENST00000537706 IKQ13123 557 aaPredicted RBP10.97□□□□□ -0.65
USP28-205ENST00000537706 ACAP1Q15027 740 aa10.97□□□□□ -0.65
USP28-205ENST00000537706 GDF6Q6KF10 455 aaPredicted RBP10.97□□□□□ -0.65
USP28-205ENST00000537706 C7orf31Q8N865 590 aa10.97□□□□□ -0.65
USP28-205ENST00000537706 MORC4Q8TE76 937 aa10.97□□□□□ -0.65
USP28-205ENST00000537706 PPP1R13LQ8WUF5 828 aa10.97□□□□□ -0.65
USP28-205ENST00000537706 SDR42E1Q8WUS8 393 aa10.97□□□□□ -0.65
USP28-205ENST00000537706 TOP1MTQ969P6 601 aa10.97□□□□□ -0.65
USP28-205ENST00000537706 RBM47A0AV96 593 aaKnown RBP10.96□□□□□ -0.65
USP28-205ENST00000537706 GRM6O15303 877 aa10.96□□□□□ -0.65
USP28-205ENST00000537706 MMP1P03956 469 aa10.96□□□□□ -0.65
USP28-205ENST00000537706 CLCN5P51795 746 aa10.96□□□□□ -0.65
USP28-205ENST00000537706 PDE4BQ07343 736 aa10.96□□□□□ -0.65
USP28-205ENST00000537706 TCTN1Q2MV58 587 aa10.96□□□□□ -0.65
USP28-205ENST00000537706 ALDH1L2Q3SY69 923 aa10.96□□□□□ -0.65
USP28-205ENST00000537706 TMEM63BQ5T3F8 832 aa10.96□□□□□ -0.65
USP28-205ENST00000537706 KIAA0319Q5VV43 1072 aa10.96□□□□□ -0.65
USP28-205ENST00000537706 NSMFQ6X4W1 530 aa10.96□□□□□ -0.65
USP28-205ENST00000537706 FAM160B2Q86V87 743 aa10.96□□□□□ -0.65
USP28-205ENST00000537706 RPAP2Q8IXW5 612 aaPredicted RBP10.96□□□□□ -0.65
USP28-205ENST00000537706 DBF4BQ8NFT6 615 aa10.96□□□□□ -0.65
USP28-205ENST00000537706 SCFD2Q8WU76 684 aa10.96□□□□□ -0.65
USP28-205ENST00000537706 CHURC1Q8WUH1 139 aa10.96□□□□□ -0.65
USP28-205ENST00000537706 MEIS3Q99687 375 aa10.96□□□□□ -0.65
USP28-205ENST00000537706 KATNAL1Q9BW62 490 aa10.96□□□□□ -0.65
USP28-205ENST00000537706 PLVAPQ9BX97 442 aa10.96□□□□□ -0.65
USP28-205ENST00000537706 IFIH1Q9BYX4 1025 aaKnown RBP10.96□□□□□ -0.65
USP28-205ENST00000537706 DLL3Q9NYJ7 618 aa10.96□□□□□ -0.65
USP28-205ENST00000537706 NR2E1Q9Y466 385 aa10.96□□□□□ -0.65
USP28-205ENST00000537706 TRANK1O15050 2925 aa10.96□□□□□ -0.66
USP28-205ENST00000537706 EVX2Q03828 476 aa10.96□□□□□ -0.66
USP28-205ENST00000537706 DHX38Q92620 1227 aaKnown RBP10.96□□□□□ -0.66
USP28-205ENST00000537706 CYP39A1Q9NYL5 469 aa10.96□□□□□ -0.66
USP28-205ENST00000537706 SORCS3Q9UPU3 1222 aa10.96□□□□□ -0.66
USP28-205ENST00000537706 NAV1Q8NEY1 1877 aa10.95□□□□□ -0.66
USP28-205ENST00000537706 REV3LO60673 3130 aa10.95□□□□□ -0.66
USP28-205ENST00000537706 PTPRSQ13332 1948 aa10.95□□□□□ -0.66
USP28-205ENST00000537706 CSPG5O95196 566 aa10.95□□□□□ -0.66
USP28-205ENST00000537706 CASTP20810 708 aaKnown RBP10.95□□□□□ -0.66
USP28-205ENST00000537706 GTF2F1P35269 517 aaKnown RBP eCLIP10.95□□□□□ -0.66
USP28-205ENST00000537706 PDE4DQ08499 809 aa10.95□□□□□ -0.66
USP28-205ENST00000537706 ZNF618Q5T7W0 954 aa10.95□□□□□ -0.66
USP28-205ENST00000537706 SLC9C2Q5TAH2 1124 aa10.95□□□□□ -0.66
USP28-205ENST00000537706 C12orf60Q5U649 245 aa10.95□□□□□ -0.66
USP28-205ENST00000537706 MIER1Q8N108 512 aa10.95□□□□□ -0.66
USP28-205ENST00000537706 KREMEN2Q8NCW0 462 aa10.95□□□□□ -0.66
USP28-205ENST00000537706 GTF2IRD1Q9UHL9 959 aa10.95□□□□□ -0.66
USP28-205ENST00000537706 SYNPO2Q9UMS6 1093 aa10.95□□□□□ -0.66
USP28-205ENST00000537706 PCDHGC5Q9Y5F6 944 aa10.95□□□□□ -0.66
USP28-205ENST00000537706 MCM3APO60318 1980 aa10.94□□□□□ -0.66
USP28-205ENST00000537706 RSPH10B2B2RC85 870 aa10.94□□□□□ -0.66
USP28-205ENST00000537706 RSPH10BP0C881 870 aa10.94□□□□□ -0.66
USP28-205ENST00000537706 STAT2P52630 851 aa10.94□□□□□ -0.66
USP28-205ENST00000537706 ZC3H14Q6PJT7 736 aaKnown RBP10.94□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms