RNA–Protein interactions for RNA: ENST00000537004.5

CLIP1-208, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,000 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-208ENST00000537004 KRT40Q6A162 431 aa13.68□□□□□ -0.22
CLIP1-208ENST00000537004 ANKRD35Q8N283 1001 aa13.68□□□□□ -0.22
CLIP1-208ENST00000537004 BICD2Q8TD16 824 aa13.68□□□□□ -0.22
CLIP1-208ENST00000537004 NUP133Q8WUM0 1156 aa13.68□□□□□ -0.22
CLIP1-208ENST00000537004 KAT14Q9H8E8 782 aa13.68□□□□□ -0.22
CLIP1-208ENST00000537004 KIF28PB7ZC32 967 aa13.67□□□□□ -0.22
CLIP1-208ENST00000537004 OAZ1P54368 228 aa13.67□□□□□ -0.22
CLIP1-208ENST00000537004 CNTN2Q02246 1040 aa13.67□□□□□ -0.22
CLIP1-208ENST00000537004 MUM1L1Q5H9M0 696 aa13.67□□□□□ -0.22
CLIP1-208ENST00000537004 IFIT1BQ5T764 474 aaKnown RBP13.67□□□□□ -0.22
CLIP1-208ENST00000537004 BTNL9Q6UXG8 535 aa13.67□□□□□ -0.22
CLIP1-208ENST00000537004 ANP32BQ92688 251 aaKnown RBP13.67□□□□□ -0.22
CLIP1-208ENST00000537004 RNF146Q9NTX7 359 aa13.67□□□□□ -0.22
CLIP1-208ENST00000537004 SLC5A4Q9NY91 659 aa13.67□□□□□ -0.22
CLIP1-208ENST00000537004 OGDHLQ9ULD0 1010 aa13.67□□□□□ -0.22
CLIP1-208ENST00000537004 DNAJC25-GNG10A0A024R161 153 aa13.66□□□□□ -0.22
CLIP1-208ENST00000537004 COPB2P35606 906 aa13.66□□□□□ -0.22
CLIP1-208ENST00000537004 TRIM29Q14134 588 aa13.66□□□□□ -0.22
CLIP1-208ENST00000537004 PPP2R5BQ15173 497 aa13.66□□□□□ -0.22
CLIP1-208ENST00000537004 MYSM1Q5VVJ2 828 aa13.66□□□□□ -0.22
CLIP1-208ENST00000537004 TRIM22Q8IYM9 498 aa13.66□□□□□ -0.22
CLIP1-208ENST00000537004 WASF1Q92558 559 aa13.66□□□□□ -0.22
CLIP1-208ENST00000537004 ANKS1AQ92625 1134 aa13.66□□□□□ -0.22
CLIP1-208ENST00000537004 FGD4Q96M96 766 aa13.66□□□□□ -0.22
CLIP1-208ENST00000537004 TRERF1Q96PN7 1200 aa13.66□□□□□ -0.22
CLIP1-208ENST00000537004 TINF2Q9BSI4 451 aa13.66□□□□□ -0.22
CLIP1-208ENST00000537004 NUP62CLQ9H1M0 184 aa13.66□□□□□ -0.22
CLIP1-208ENST00000537004 RANBP17Q9H2T7 1088 aaKnown RBP13.66□□□□□ -0.22
CLIP1-208ENST00000537004 DACT1Q9NYF0 836 aa13.66□□□□□ -0.22
CLIP1-208ENST00000537004 RTEL1Q9NZ71 1219 aa13.66□□□□□ -0.22
CLIP1-208ENST00000537004 CCPG1Q9ULG6 757 aa13.66□□□□□ -0.22
CLIP1-208ENST00000537004 FDX1P10109 184 aa13.66□□□□□ -0.22
CLIP1-208ENST00000537004 CATIPQ7Z7H3 387 aa13.66□□□□□ -0.22
CLIP1-208ENST00000537004 RNF214Q8ND24 703 aa13.66□□□□□ -0.22
CLIP1-208ENST00000537004 CHST13Q8NET6 341 aa13.66□□□□□ -0.22
CLIP1-208ENST00000537004 DPF3Q92784 378 aa13.66□□□□□ -0.22
CLIP1-208ENST00000537004 PURBQ96QR8 312 aaKnown RBP13.66□□□□□ -0.22
CLIP1-208ENST00000537004 A1CFQ9NQ94 594 aaKnown RBP13.66□□□□□ -0.22
CLIP1-208ENST00000537004 DDX19AQ9NUU7 478 aaKnown RBP13.66□□□□□ -0.22
CLIP1-208ENST00000537004 PCDH10Q9P2E7 1040 aa13.66□□□□□ -0.22
CLIP1-208ENST00000537004 NR1I2O75469 434 aa13.65□□□□□ -0.22
CLIP1-208ENST00000537004 STAG2Q8N3U4 1231 aa13.65□□□□□ -0.22
CLIP1-208ENST00000537004 ACAD9Q9H845 621 aa13.65□□□□□ -0.22
CLIP1-208ENST00000537004 POLR3EQ9NVU0 708 aa13.65□□□□□ -0.22
CLIP1-208ENST00000537004 DDX20Q9UHI6 824 aaKnown RBP13.65□□□□□ -0.22
CLIP1-208ENST00000537004 ICAM1P05362 532 aa13.64□□□□□ -0.23
CLIP1-208ENST00000537004 ME1P48163 572 aa13.64□□□□□ -0.23
CLIP1-208ENST00000537004 CCDC173Q0VFZ6 552 aa13.64□□□□□ -0.23
CLIP1-208ENST00000537004 CAMK4Q16566 473 aa13.64□□□□□ -0.23
CLIP1-208ENST00000537004 CCDC178Q5BJE1 867 aa13.64□□□□□ -0.23
CLIP1-208ENST00000537004 CMTR1Q8N1G2 835 aaKnown RBP13.64□□□□□ -0.23
CLIP1-208ENST00000537004 CCDC82Q8N4S0 544 aa13.64□□□□□ -0.23
CLIP1-208ENST00000537004 LENG1Q96BZ8 264 aaPredicted RBP13.64□□□□□ -0.23
CLIP1-208ENST00000537004 FUCA2Q9BTY2 467 aa13.64□□□□□ -0.23
CLIP1-208ENST00000537004 FBXO40Q9UH90 709 aa13.64□□□□□ -0.23
CLIP1-208ENST00000537004 CLIC4Q9Y696 253 aa13.64□□□□□ -0.23
CLIP1-208ENST00000537004 ZNF236Q9UL36 1845 aa13.64□□□□□ -0.23
CLIP1-208ENST00000537004 NFIBO00712 420 aa13.64□□□□□ -0.23
CLIP1-208ENST00000537004 DEXIO95424 95 aa13.64□□□□□ -0.23
CLIP1-208ENST00000537004 YEATS4O95619 227 aa13.64□□□□□ -0.23
CLIP1-208ENST00000537004 SNAI1O95863 264 aaPredicted RBP13.64□□□□□ -0.23
CLIP1-208ENST00000537004 MYCNP04198 464 aaPredicted RBP13.64□□□□□ -0.23
CLIP1-208ENST00000537004 CALM1P0DP23 149 aa13.64□□□□□ -0.23
CLIP1-208ENST00000537004 CALM2P0DP24 149 aa13.64□□□□□ -0.23
CLIP1-208ENST00000537004 CALM3P0DP25 149 aa13.64□□□□□ -0.23
CLIP1-208ENST00000537004 TROAPQ12815 778 aa13.64□□□□□ -0.23
CLIP1-208ENST00000537004 GNL2Q13823 731 aaKnown RBP13.64□□□□□ -0.23
CLIP1-208ENST00000537004 GPATCH4Q5T3I0 446 aaKnown RBP13.64□□□□□ -0.23
CLIP1-208ENST00000537004 NSMFQ6X4W1 530 aa13.64□□□□□ -0.23
CLIP1-208ENST00000537004 LINC00301Q8NCQ3 95 aa13.64□□□□□ -0.23
CLIP1-208ENST00000537004 PPP1R9BQ96SB3 815 aa13.64□□□□□ -0.23
CLIP1-208ENST00000537004 TNMDQ9H2S6 317 aa13.64□□□□□ -0.23
CLIP1-208ENST00000537004 CLSTN2Q9H4D0 955 aa13.64□□□□□ -0.23
CLIP1-208ENST00000537004 VAT1LQ9HCJ6 419 aa13.64□□□□□ -0.23
CLIP1-208ENST00000537004 DIS3Q9Y2L1 958 aaKnown RBP13.64□□□□□ -0.23
CLIP1-208ENST00000537004 SMCHD1A6NHR9 2005 aa13.63□□□□□ -0.23
CLIP1-208ENST00000537004 ASTN1O14525 1302 aa13.63□□□□□ -0.23
CLIP1-208ENST00000537004 SEPT4O43236 478 aa13.63□□□□□ -0.23
CLIP1-208ENST00000537004 DDAH1O94760 285 aa13.63□□□□□ -0.23
CLIP1-208ENST00000537004 U2AF2P26368 475 aaKnown RBP eCLIP13.63□□□□□ -0.23
CLIP1-208ENST00000537004 NT5C2P49902 561 aa13.63□□□□□ -0.23
CLIP1-208ENST00000537004 STK38Q15208 465 aa13.63□□□□□ -0.23
CLIP1-208ENST00000537004 USH1GQ495M9 461 aa13.63□□□□□ -0.23
CLIP1-208ENST00000537004 PRPF38BQ5VTL8 546 aaKnown RBP13.63□□□□□ -0.23
CLIP1-208ENST00000537004 NECAB2Q7Z6G3 386 aa13.63□□□□□ -0.23
CLIP1-208ENST00000537004 ADGRF4Q8IZF3 695 aa13.63□□□□□ -0.23
CLIP1-208ENST00000537004 PFASO15067 1338 aa13.63□□□□□ -0.23
CLIP1-208ENST00000537004 POTEB2H3BUK9 544 aa13.63□□□□□ -0.23
CLIP1-208ENST00000537004 PARP1P09874 1014 aaKnown RBP13.63□□□□□ -0.23
CLIP1-208ENST00000537004 ZNF865P0CJ78 1059 aaPredicted RBP13.63□□□□□ -0.23
CLIP1-208ENST00000537004 GJC2Q5T442 439 aaPredicted RBP13.63□□□□□ -0.23
CLIP1-208ENST00000537004 DHX30Q7L2E3 1194 aaKnown RBP eCLIP13.63□□□□□ -0.23
CLIP1-208ENST00000537004 KCNG4Q8TDN1 519 aa13.63□□□□□ -0.23
CLIP1-208ENST00000537004 RNF26Q9BY78 433 aaPredicted RBP13.63□□□□□ -0.23
CLIP1-208ENST00000537004 RBM28Q9NW13 759 aaKnown RBP13.63□□□□□ -0.23
CLIP1-208ENST00000537004 CYP39A1Q9NYL5 469 aa13.63□□□□□ -0.23
CLIP1-208ENST00000537004 PCDHA7Q9UN72 937 aa13.63□□□□□ -0.23
CLIP1-208ENST00000537004 ZNFX1Q9P2E3 1918 aaKnown RBP13.62□□□□□ -0.23
CLIP1-208ENST00000537004 SOWAHBA6NEL2 793 aa13.62□□□□□ -0.23
CLIP1-208ENST00000537004 H0YGN5 161 aa13.62□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms