RNA–Protein interactions for RNA: ENST00000536782.2

TNFRSF1B-204, Transcript of TNF receptor superfamily member 1B, humanhuman

TSL 1 (best) BASIC

Gene TNFRSF1B, Length 557 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF1B-204ENST00000536782 WNT8AQ9H1J5 351 aa23.02■■□□□ 1.28
TNFRSF1B-204ENST00000536782 CTNNA3Q9UI47 895 aa23.02■■□□□ 1.28
TNFRSF1B-204ENST00000536782 ASPRV1Q53RT3 343 aa23.01■■□□□ 1.27
TNFRSF1B-204ENST00000536782 RPUSD2Q8IZ73 545 aaKnown RBP23.01■■□□□ 1.27
TNFRSF1B-204ENST00000536782 ADGRF4Q8IZF3 695 aa23.01■■□□□ 1.27
TNFRSF1B-204ENST00000536782 ENAHQ8N8S7 591 aaPredicted RBP23.01■■□□□ 1.27
TNFRSF1B-204ENST00000536782 KRT23Q9C075 422 aa23.01■■□□□ 1.27
TNFRSF1B-204ENST00000536782 CXXC1Q9P0U4 656 aaPredicted RBP23.01■■□□□ 1.27
TNFRSF1B-204ENST00000536782 ZSWIM5Q9P217 1185 aa23.01■■□□□ 1.27
TNFRSF1B-204ENST00000536782 MSRAQ9UJ68 235 aa23.01■■□□□ 1.27
TNFRSF1B-204ENST00000536782 ABCB11O95342 1321 aa23.01■■□□□ 1.27
TNFRSF1B-204ENST00000536782 LAMA4Q16363 1823 aa23.01■■□□□ 1.27
TNFRSF1B-204ENST00000536782 KPNA6O60684 536 aa23■■□□□ 1.27
TNFRSF1B-204ENST00000536782 TXNP10599 105 aaKnown RBP23■■□□□ 1.27
TNFRSF1B-204ENST00000536782 TTLL4Q14679 1199 aa23■■□□□ 1.27
TNFRSF1B-204ENST00000536782 RAB30Q15771 203 aa23■■□□□ 1.27
TNFRSF1B-204ENST00000536782 OTOP2Q7RTS6 562 aa23■■□□□ 1.27
TNFRSF1B-204ENST00000536782 USP38Q8NB14 1042 aa23■■□□□ 1.27
TNFRSF1B-204ENST00000536782 CNNM2Q9H8M5 875 aa23■■□□□ 1.27
TNFRSF1B-204ENST00000536782 TRMT13Q9NUP7 481 aaKnown RBP23■■□□□ 1.27
TNFRSF1B-204ENST00000536782 TNKSO95271 1327 aa23■■□□□ 1.27
TNFRSF1B-204ENST00000536782 SCN5AQ14524 2016 aa22.99■■□□□ 1.27
TNFRSF1B-204ENST00000536782 A6NJR5 290 aa22.99■■□□□ 1.27
TNFRSF1B-204ENST00000536782 DHX16O60231 1041 aaKnown RBP22.99■■□□□ 1.27
TNFRSF1B-204ENST00000536782 PARP1P09874 1014 aaKnown RBP22.99■■□□□ 1.27
TNFRSF1B-204ENST00000536782 MCF2L2Q86YR7 1114 aa22.99■■□□□ 1.27
TNFRSF1B-204ENST00000536782 COPS5Q92905 334 aa22.99■■□□□ 1.27
TNFRSF1B-204ENST00000536782 UBAC1Q9BSL1 405 aa22.99■■□□□ 1.27
TNFRSF1B-204ENST00000536782 SCN10AQ9Y5Y9 1956 aa22.99■■□□□ 1.27
TNFRSF1B-204ENST00000536782 TRANK1O15050 2925 aa22.98■■□□□ 1.27
TNFRSF1B-204ENST00000536782 CYP2C9P11712 490 aa22.98■■□□□ 1.27
TNFRSF1B-204ENST00000536782 NBPF20Q3BBV1 942 aa22.98■■□□□ 1.27
TNFRSF1B-204ENST00000536782 FAM47CQ5HY64 1035 aa22.98■■□□□ 1.27
TNFRSF1B-204ENST00000536782 TBC1D5Q92609 795 aa22.98■■□□□ 1.27
TNFRSF1B-204ENST00000536782 SCLYQ96I15 445 aa22.98■■□□□ 1.27
TNFRSF1B-204ENST00000536782 GAS2L1Q99501 681 aaPredicted RBP22.98■■□□□ 1.27
TNFRSF1B-204ENST00000536782 QRICH1Q2TAL8 776 aa22.97■■□□□ 1.27
TNFRSF1B-204ENST00000536782 NFRKBQ6P4R8 1299 aa22.97■■□□□ 1.27
TNFRSF1B-204ENST00000536782 FBXO11Q86XK2 927 aa22.97■■□□□ 1.27
TNFRSF1B-204ENST00000536782 SYTL5Q8TDW5 730 aaPredicted RBP22.97■■□□□ 1.27
TNFRSF1B-204ENST00000536782 NSUN6Q8TEA1 469 aaKnown RBP22.97■■□□□ 1.27
TNFRSF1B-204ENST00000536782 VWCEQ96DN2 955 aa22.97■■□□□ 1.27
TNFRSF1B-204ENST00000536782 TAAR1Q96RJ0 339 aa22.97■■□□□ 1.27
TNFRSF1B-204ENST00000536782 MRPL11Q9Y3B7 192 aaKnown RBP22.97■■□□□ 1.27
TNFRSF1B-204ENST00000536782 ARIH2O95376 493 aa22.96■■□□□ 1.27
TNFRSF1B-204ENST00000536782 PFKMP08237 780 aa22.96■■□□□ 1.27
TNFRSF1B-204ENST00000536782 PRDM12Q9H4Q4 367 aa22.96■■□□□ 1.27
TNFRSF1B-204ENST00000536782 JMJD4Q9H9V9 463 aa22.96■■□□□ 1.27
TNFRSF1B-204ENST00000536782 VAT1LQ9HCJ6 419 aa22.96■■□□□ 1.27
TNFRSF1B-204ENST00000536782 SLC4A7Q9Y6M7 1214 aa22.96■■□□□ 1.27
TNFRSF1B-204ENST00000536782 PTPN11Q06124 597 aaPredicted RBP22.95■■□□□ 1.26
TNFRSF1B-204ENST00000536782 STXBP2Q15833 593 aa22.95■■□□□ 1.26
TNFRSF1B-204ENST00000536782 IFIT1BQ5T764 474 aaKnown RBP22.95■■□□□ 1.26
TNFRSF1B-204ENST00000536782 CCDC62Q6P9F0 684 aa22.95■■□□□ 1.26
TNFRSF1B-204ENST00000536782 SEPT14Q6ZU15 432 aa22.95■■□□□ 1.26
TNFRSF1B-204ENST00000536782 IWS1Q96ST2 819 aa22.95■■□□□ 1.26
TNFRSF1B-204ENST00000536782 RMDN3Q96TC7 470 aa22.95■■□□□ 1.26
TNFRSF1B-204ENST00000536782 NKX2-4Q9H2Z4 354 aa22.95■■□□□ 1.26
TNFRSF1B-204ENST00000536782 SLC28A3Q9HAS3 691 aa22.95■■□□□ 1.26
TNFRSF1B-204ENST00000536782 COL20A1Q9P218 1284 aa22.95■■□□□ 1.26
TNFRSF1B-204ENST00000536782 TET1Q8NFU7 2136 aa22.94■■□□□ 1.26
TNFRSF1B-204ENST00000536782 TRIP12Q14669 1992 aaPredicted RBP22.94■■□□□ 1.26
TNFRSF1B-204ENST00000536782 MYH6P13533 1939 aa22.94■■□□□ 1.26
TNFRSF1B-204ENST00000536782 ZBBXA8MT70 800 aa22.94■■□□□ 1.26
TNFRSF1B-204ENST00000536782 IL25Q9H293 177 aa22.94■■□□□ 1.26
TNFRSF1B-204ENST00000536782 YBX2Q9Y2T7 364 aaKnown RBP22.94■■□□□ 1.26
TNFRSF1B-204ENST00000536782 GH1P01241 217 aa22.93■■□□□ 1.26
TNFRSF1B-204ENST00000536782 LY6KQ17RY6 165 aa22.93■■□□□ 1.26
TNFRSF1B-204ENST00000536782 ARHGEF16Q5VV41 709 aa22.93■■□□□ 1.26
TNFRSF1B-204ENST00000536782 DEFB128Q7Z7B8 93 aa22.93■■□□□ 1.26
TNFRSF1B-204ENST00000536782 RETREG2Q8NC44 543 aa22.93■■□□□ 1.26
TNFRSF1B-204ENST00000536782 PPP1R13LQ8WUF5 828 aa22.93■■□□□ 1.26
TNFRSF1B-204ENST00000536782 AMNQ9BXJ7 453 aa22.93■■□□□ 1.26
TNFRSF1B-204ENST00000536782 PITPNM1O00562 1244 aa22.92■■□□□ 1.26
TNFRSF1B-204ENST00000536782 RFC2P35250 354 aa22.92■■□□□ 1.26
TNFRSF1B-204ENST00000536782 CHMP4BP1P59074 171 aa22.92■■□□□ 1.26
TNFRSF1B-204ENST00000536782 STAG2Q8N3U4 1231 aa22.92■■□□□ 1.26
TNFRSF1B-204ENST00000536782 AFG1LQ8WV93 481 aa22.92■■□□□ 1.26
TNFRSF1B-204ENST00000536782 NOD1Q9Y239 953 aa22.92■■□□□ 1.26
TNFRSF1B-204ENST00000536782 BDP1A6H8Y1 2624 aa22.91■■□□□ 1.26
TNFRSF1B-204ENST00000536782 KIAA1217Q5T5P2 1943 aa22.91■■□□□ 1.26
TNFRSF1B-204ENST00000536782 KLRF2D3W0D1 207 aa22.91■■□□□ 1.26
TNFRSF1B-204ENST00000536782 CFBP00751 764 aa22.91■■□□□ 1.26
TNFRSF1B-204ENST00000536782 MMP3P08254 477 aa22.91■■□□□ 1.26
TNFRSF1B-204ENST00000536782 ACTN1P12814 892 aa22.91■■□□□ 1.26
TNFRSF1B-204ENST00000536782 ATP2A2P16615 1042 aaKnown RBP22.91■■□□□ 1.26
TNFRSF1B-204ENST00000536782 PDE4AP27815 886 aa22.91■■□□□ 1.26
TNFRSF1B-204ENST00000536782 RABGGTBP53611 331 aa22.91■■□□□ 1.26
TNFRSF1B-204ENST00000536782 ARHGAP1Q07960 439 aa22.91■■□□□ 1.26
TNFRSF1B-204ENST00000536782 TRDNQ13061 729 aa22.91■■□□□ 1.26
TNFRSF1B-204ENST00000536782 BFSP2Q13515 415 aa22.91■■□□□ 1.26
TNFRSF1B-204ENST00000536782 SEC23AQ15436 765 aa22.91■■□□□ 1.26
TNFRSF1B-204ENST00000536782 TTC22Q5TAA0 569 aa22.91■■□□□ 1.26
TNFRSF1B-204ENST00000536782 SYMPKQ92797 1274 aaKnown RBP22.91■■□□□ 1.26
TNFRSF1B-204ENST00000536782 PRDM6Q9NQX0 595 aa22.91■■□□□ 1.26
TNFRSF1B-204ENST00000536782 PCDHA11Q9Y5I1 949 aa22.91■■□□□ 1.26
TNFRSF1B-204ENST00000536782 EIF3JO75822 258 aaKnown RBP22.9■■□□□ 1.26
TNFRSF1B-204ENST00000536782 IQCF3P0C7M6 154 aa22.9■■□□□ 1.26
TNFRSF1B-204ENST00000536782 GSPT1P15170 499 aaKnown RBP22.9■■□□□ 1.26
TNFRSF1B-204ENST00000536782 EIF2AK2P19525 551 aaKnown RBP22.9■■□□□ 1.26
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms