RNA–Protein interactions for RNA: ENST00000533064.1

TRIM3-212, Transcript of tripartite motif containing 3, humanhuman

TSL 1 (best)

Gene TRIM3, Length 1,654 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM3-212ENST00000533064 ADGRA2Q96PE1 1338 aa16.19■□□□□ 0.18
TRIM3-212ENST00000533064 FIBPO43427 364 aa16.18■□□□□ 0.18
TRIM3-212ENST00000533064 BMP15O95972 392 aa16.18■□□□□ 0.18
TRIM3-212ENST00000533064 FCER1AP12319 257 aa16.18■□□□□ 0.18
TRIM3-212ENST00000533064 MAPK4P31152 587 aa16.18■□□□□ 0.18
TRIM3-212ENST00000533064 STK38Q15208 465 aa16.18■□□□□ 0.18
TRIM3-212ENST00000533064 LETM2Q2VYF4 491 aa16.18■□□□□ 0.18
TRIM3-212ENST00000533064 DHX30Q7L2E3 1194 aaKnown RBP eCLIP16.18■□□□□ 0.18
TRIM3-212ENST00000533064 SPATA32Q96LK8 384 aa16.18■□□□□ 0.18
TRIM3-212ENST00000533064 MMP19Q99542 508 aa16.18■□□□□ 0.18
TRIM3-212ENST00000533064 RTEL1Q9NZ71 1219 aa16.18■□□□□ 0.18
TRIM3-212ENST00000533064 PCNTO95613 3336 aa16.18■□□□□ 0.18
TRIM3-212ENST00000533064 ZNF236Q9UL36 1845 aa16.18■□□□□ 0.18
TRIM3-212ENST00000533064 CCNT1O60563 726 aaKnown RBP16.18■□□□□ 0.18
TRIM3-212ENST00000533064 BCRP11274 1271 aa16.18■□□□□ 0.18
TRIM3-212ENST00000533064 HSPA6P17066 643 aa16.18■□□□□ 0.18
TRIM3-212ENST00000533064 SREBF1P36956 1147 aa16.18■□□□□ 0.18
TRIM3-212ENST00000533064 TOB1P50616 345 aaPredicted RBP16.18■□□□□ 0.18
TRIM3-212ENST00000533064 USP11P51784 963 aa16.18■□□□□ 0.18
TRIM3-212ENST00000533064 ARHGAP4P98171 946 aa16.18■□□□□ 0.18
TRIM3-212ENST00000533064 SF3A1Q15459 793 aaKnown RBP16.18■□□□□ 0.18
TRIM3-212ENST00000533064 KLHL40Q2TBA0 621 aa16.18■□□□□ 0.18
TRIM3-212ENST00000533064 C17orf99Q6UX52 265 aa16.18■□□□□ 0.18
TRIM3-212ENST00000533064 RMDN3Q96TC7 470 aa16.18■□□□□ 0.18
TRIM3-212ENST00000533064 PORCNQ9H237 461 aa16.18■□□□□ 0.18
TRIM3-212ENST00000533064 EFCC1Q9HA90 598 aa16.18■□□□□ 0.18
TRIM3-212ENST00000533064 CLIC4Q9Y696 253 aa16.18■□□□□ 0.18
TRIM3-212ENST00000533064 DDX49Q9Y6V7 483 aaKnown RBP16.18■□□□□ 0.18
TRIM3-212ENST00000533064 STRNO43815 780 aa16.17■□□□□ 0.18
TRIM3-212ENST00000533064 YEATS4O95619 227 aa16.17■□□□□ 0.18
TRIM3-212ENST00000533064 GCFC2P16383 781 aaKnown RBP16.17■□□□□ 0.18
TRIM3-212ENST00000533064 C1QTNF8P60827 252 aa16.17■□□□□ 0.18
TRIM3-212ENST00000533064 ORC2Q13416 577 aaPredicted RBP16.17■□□□□ 0.18
TRIM3-212ENST00000533064 ARHGEF16Q5VV41 709 aa16.17■□□□□ 0.18
TRIM3-212ENST00000533064 ADD3Q9UEY8 706 aaKnown RBP16.17■□□□□ 0.18
TRIM3-212ENST00000533064 PCDHB6Q9Y5E3 794 aa16.17■□□□□ 0.18
TRIM3-212ENST00000533064 WDR81Q562E7 1941 aa16.16■□□□□ 0.18
TRIM3-212ENST00000533064 POTEB2H3BUK9 544 aa16.16■□□□□ 0.18
TRIM3-212ENST00000533064 MCM7P33993 719 aa16.16■□□□□ 0.18
TRIM3-212ENST00000533064 ZNF76P36508 570 aa16.16■□□□□ 0.18
TRIM3-212ENST00000533064 NASPP49321 788 aaPredicted RBP16.16■□□□□ 0.18
TRIM3-212ENST00000533064 ZNF174Q15697 407 aa16.16■□□□□ 0.18
TRIM3-212ENST00000533064 JMYQ8N9B5 988 aa16.16■□□□□ 0.18
TRIM3-212ENST00000533064 DNERQ8NFT8 737 aa16.16■□□□□ 0.18
TRIM3-212ENST00000533064 NSUN6Q8TEA1 469 aaKnown RBP16.16■□□□□ 0.18
TRIM3-212ENST00000533064 TAAR1Q96RJ0 339 aa16.16■□□□□ 0.18
TRIM3-212ENST00000533064 MPHOSPH6Q99547 160 aaKnown RBP16.16■□□□□ 0.18
TRIM3-212ENST00000533064 FTOQ9C0B1 505 aaKnown RBP eCLIP16.16■□□□□ 0.18
TRIM3-212ENST00000533064 EIF4ENIF1Q9NRA8 985 aaKnown RBP16.16■□□□□ 0.18
TRIM3-212ENST00000533064 COL20A1Q9P218 1284 aa16.16■□□□□ 0.18
TRIM3-212ENST00000533064 DOCK5Q9H7D0 1870 aa16.15■□□□□ 0.18
TRIM3-212ENST00000533064 B4DLN1 442 aa16.15■□□□□ 0.18
TRIM3-212ENST00000533064 MOXD1Q6UVY6 613 aa16.15■□□□□ 0.18
TRIM3-212ENST00000533064 PLEKHH3Q7Z736 793 aa16.15■□□□□ 0.18
TRIM3-212ENST00000533064 ABRAQ8N0Z2 381 aa16.15■□□□□ 0.18
TRIM3-212ENST00000533064 KCNG4Q8TDN1 519 aa16.15■□□□□ 0.18
TRIM3-212ENST00000533064 GDPD2Q9HCC8 539 aa16.15■□□□□ 0.18
TRIM3-212ENST00000533064 PXMP2Q9NR77 195 aa16.15■□□□□ 0.18
TRIM3-212ENST00000533064 CASP8AP2Q9UKL3 1982 aa16.15■□□□□ 0.18
TRIM3-212ENST00000533064 SPTLC2O15270 562 aa16.14■□□□□ 0.18
TRIM3-212ENST00000533064 MBD3O95983 291 aa16.14■□□□□ 0.18
TRIM3-212ENST00000533064 CYP3A4P08684 503 aa16.14■□□□□ 0.18
TRIM3-212ENST00000533064 EIF2AK2P19525 551 aaKnown RBP16.14■□□□□ 0.18
TRIM3-212ENST00000533064 UBXN2AP68543 259 aa16.14■□□□□ 0.18
TRIM3-212ENST00000533064 GSE1Q14687 1217 aa16.14■□□□□ 0.18
TRIM3-212ENST00000533064 SLC39A14Q15043 492 aa16.14■□□□□ 0.18
TRIM3-212ENST00000533064 PPP4R3AQ6IN85 833 aa16.14■□□□□ 0.18
TRIM3-212ENST00000533064 GPR142Q7Z601 462 aa16.14■□□□□ 0.18
TRIM3-212ENST00000533064 LINC00301Q8NCQ3 95 aa16.14■□□□□ 0.18
TRIM3-212ENST00000533064 LEO1Q8WVC0 666 aaPredicted RBP16.14■□□□□ 0.18
TRIM3-212ENST00000533064 RCOR1Q9UKL0 485 aa16.14■□□□□ 0.18
TRIM3-212ENST00000533064 FRMPD4Q14CM0 1322 aa16.14■□□□□ 0.17
TRIM3-212ENST00000533064 RPTORQ8N122 1335 aa16.14■□□□□ 0.17
TRIM3-212ENST00000533064 LRRC37A2A6NM11 1700 aa16.14■□□□□ 0.17
TRIM3-212ENST00000533064 NEMFO60524 1076 aa16.14■□□□□ 0.17
TRIM3-212ENST00000533064 PGM5Q15124 567 aa16.14■□□□□ 0.17
TRIM3-212ENST00000533064 DDX25Q9UHL0 483 aaKnown RBP16.14■□□□□ 0.17
TRIM3-212ENST00000533064 ELP1O95163 1332 aa16.14■□□□□ 0.17
TRIM3-212ENST00000533064 ZSWIM8A7E2V4 1837 aa16.13■□□□□ 0.17
TRIM3-212ENST00000533064 GOLGA6L4A6NEF3 574 aa16.13■□□□□ 0.17
TRIM3-212ENST00000533064 LAD1O00515 517 aa16.13■□□□□ 0.17
TRIM3-212ENST00000533064 WNT7AO00755 349 aa16.13■□□□□ 0.17
TRIM3-212ENST00000533064 TRPA1O75762 1119 aa16.13■□□□□ 0.17
TRIM3-212ENST00000533064 CCND2P30279 289 aa16.13■□□□□ 0.17
TRIM3-212ENST00000533064 ME1P48163 572 aa16.13■□□□□ 0.17
TRIM3-212ENST00000533064 PTGDRQ13258 359 aa16.13■□□□□ 0.17
TRIM3-212ENST00000533064 PCNX4Q63HM2 1172 aa16.13■□□□□ 0.17
TRIM3-212ENST00000533064 XRRA1Q6P2D8 792 aa16.13■□□□□ 0.17
TRIM3-212ENST00000533064 CRYGNQ8WXF5 182 aa16.13■□□□□ 0.17
TRIM3-212ENST00000533064 IWS1Q96ST2 819 aa16.13■□□□□ 0.17
TRIM3-212ENST00000533064 PDCD2LQ9BRP1 358 aa16.13■□□□□ 0.17
TRIM3-212ENST00000533064 R3HDMLQ9H3Y0 253 aa16.13■□□□□ 0.17
TRIM3-212ENST00000533064 SLC5A4Q9NY91 659 aa16.13■□□□□ 0.17
TRIM3-212ENST00000533064 MYH9P35579 1960 aaKnown RBP16.13■□□□□ 0.17
TRIM3-212ENST00000533064 CYP3A7-CYP3A51PA0A087WV96 503 aa16.12■□□□□ 0.17
TRIM3-212ENST00000533064 MARCH6O60337 910 aa16.12■□□□□ 0.17
TRIM3-212ENST00000533064 PPP6R2O75170 966 aa16.12■□□□□ 0.17
TRIM3-212ENST00000533064 TDP2O95551 362 aa16.12■□□□□ 0.17
TRIM3-212ENST00000533064 MYCLP12524 364 aaPredicted RBP16.12■□□□□ 0.17
TRIM3-212ENST00000533064 PTPREP23469 700 aa16.12■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms