RNA–Protein interactions for RNA: ENST00000529637.5

USP48-213, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 3,228 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-213ENST00000529637 PYM1Q9BRP8 204 aaKnown RBP15.75■□□□□ 0.11
USP48-213ENST00000529637 IL17RBQ9NRM6 502 aa15.75■□□□□ 0.11
USP48-213ENST00000529637 FAM153AQ9UHL3 310 aa15.75■□□□□ 0.11
USP48-213ENST00000529637 SNX12Q9UMY4 172 aa15.75■□□□□ 0.11
USP48-213ENST00000529637 BCORQ6W2J9 1755 aa15.75■□□□□ 0.11
USP48-213ENST00000529637 ECM2O94769 699 aaPredicted RBP15.75■□□□□ 0.11
USP48-213ENST00000529637 BAG3O95817 575 aa15.75■□□□□ 0.11
USP48-213ENST00000529637 LSP1P33241 339 aa15.75■□□□□ 0.11
USP48-213ENST00000529637 KRT83P78385 493 aa15.75■□□□□ 0.11
USP48-213ENST00000529637 TSR1Q2NL82 804 aaKnown RBP15.75■□□□□ 0.11
USP48-213ENST00000529637 MMGT1Q8N4V1 131 aa15.75■□□□□ 0.11
USP48-213ENST00000529637 TMEM60Q9H2L4 133 aa15.75■□□□□ 0.11
USP48-213ENST00000529637 NARFQ9UHQ1 456 aa15.75■□□□□ 0.11
USP48-213ENST00000529637 LGALS16A8MUM7 142 aa15.74■□□□□ 0.11
USP48-213ENST00000529637 NCK2O43639 380 aa15.74■□□□□ 0.11
USP48-213ENST00000529637 OPA1O60313 960 aa15.74■□□□□ 0.11
USP48-213ENST00000529637 KCTD19Q17RG1 926 aaPredicted RBP15.74■□□□□ 0.11
USP48-213ENST00000529637 LETM2Q2VYF4 491 aa15.74■□□□□ 0.11
USP48-213ENST00000529637 ZNF658Q5TYW1 1059 aaPredicted RBP15.74■□□□□ 0.11
USP48-213ENST00000529637 CENPHQ9H3R5 247 aa15.74■□□□□ 0.11
USP48-213ENST00000529637 MAGEC2Q9UBF1 373 aaPredicted RBP15.74■□□□□ 0.11
USP48-213ENST00000529637 CCNL1Q9UK58 526 aaPredicted RBP15.74■□□□□ 0.11
USP48-213ENST00000529637 MOCS3O95396 460 aa15.74■□□□□ 0.11
USP48-213ENST00000529637 LONP1P36776 959 aaKnown RBP15.74■□□□□ 0.11
USP48-213ENST00000529637 NAPAP54920 295 aa15.74■□□□□ 0.11
USP48-213ENST00000529637 NAP1L1P55209 391 aaKnown RBP15.74■□□□□ 0.11
USP48-213ENST00000529637 C12orf60Q5U649 245 aa15.74■□□□□ 0.11
USP48-213ENST00000529637 HAUS3Q68CZ6 603 aa15.74■□□□□ 0.11
USP48-213ENST00000529637 ZNF233A6NK53 670 aa15.73■□□□□ 0.11
USP48-213ENST00000529637 HDLBPQ00341 1268 aaKnown RBP15.73■□□□□ 0.11
USP48-213ENST00000529637 GRIK5Q16478 980 aa15.73■□□□□ 0.11
USP48-213ENST00000529637 CCDC178Q5BJE1 867 aa15.73■□□□□ 0.11
USP48-213ENST00000529637 B4GALNT4Q76KP1 1039 aa15.73■□□□□ 0.11
USP48-213ENST00000529637 PURBQ96QR8 312 aaKnown RBP15.73■□□□□ 0.11
USP48-213ENST00000529637 RUFY1Q96T51 708 aa15.73■□□□□ 0.11
USP48-213ENST00000529637 CACNA1SQ13698 1873 aa15.73■□□□□ 0.11
USP48-213ENST00000529637 HSF2BPO75031 334 aa15.73■□□□□ 0.11
USP48-213ENST00000529637 TRIM21P19474 475 aaKnown RBP15.73■□□□□ 0.11
USP48-213ENST00000529637 RFC4P35249 363 aa15.73■□□□□ 0.11
USP48-213ENST00000529637 GNAQP50148 359 aa15.73■□□□□ 0.11
USP48-213ENST00000529637 MEA1Q16626 185 aa15.73■□□□□ 0.11
USP48-213ENST00000529637 SBK1Q52WX2 424 aa15.73■□□□□ 0.11
USP48-213ENST00000529637 SLC10A5Q5PT55 438 aa15.73■□□□□ 0.11
USP48-213ENST00000529637 DISC1Q9NRI5 854 aa15.73■□□□□ 0.11
USP48-213ENST00000529637 EPB41P11171 864 aaKnown RBP15.73■□□□□ 0.11
USP48-213ENST00000529637 DDR1Q08345 913 aa15.73■□□□□ 0.11
USP48-213ENST00000529637 IFT88Q13099 833 aa15.73■□□□□ 0.11
USP48-213ENST00000529637 NFIXQ14938 502 aa15.73■□□□□ 0.11
USP48-213ENST00000529637 TRADDQ15628 312 aa15.73■□□□□ 0.11
USP48-213ENST00000529637 CCDC96Q2M329 555 aa15.73■□□□□ 0.11
USP48-213ENST00000529637 SPRED3Q2MJR0 410 aa15.73■□□□□ 0.11
USP48-213ENST00000529637 ZNF473Q8WTR7 871 aaKnown RBP15.73■□□□□ 0.11
USP48-213ENST00000529637 MS4A14Q96JA4 679 aa15.73■□□□□ 0.11
USP48-213ENST00000529637 ANO9A1A5B4 782 aa15.72■□□□□ 0.11
USP48-213ENST00000529637 KLRF2D3W0D1 207 aa15.72■□□□□ 0.11
USP48-213ENST00000529637 CARSP49589 748 aaKnown RBP15.72■□□□□ 0.11
USP48-213ENST00000529637 KIF5AQ12840 1032 aa15.72■□□□□ 0.11
USP48-213ENST00000529637 DGKHQ86XP1 1220 aa15.72■□□□□ 0.11
USP48-213ENST00000529637 ANKRD13CQ8N6S4 541 aa15.72■□□□□ 0.11
USP48-213ENST00000529637 EHBP1Q8NDI1 1231 aa15.72■□□□□ 0.11
USP48-213ENST00000529637 WDR66Q8TBY9 1149 aa15.72■□□□□ 0.11
USP48-213ENST00000529637 CCDC43Q96MW1 224 aaKnown RBP15.72■□□□□ 0.11
USP48-213ENST00000529637 TTYH3Q9C0H2 523 aa15.72■□□□□ 0.11
USP48-213ENST00000529637 RBM12Q9NTZ6 932 aaKnown RBP15.72■□□□□ 0.11
USP48-213ENST00000529637 STIM2Q9P246 746 aa15.72■□□□□ 0.11
USP48-213ENST00000529637 EPHB4P54760 987 aa15.72■□□□□ 0.11
USP48-213ENST00000529637 SETQ01105 290 aaPredicted RBP15.72■□□□□ 0.11
USP48-213ENST00000529637 SF3B2Q13435 895 aaKnown RBP15.72■□□□□ 0.11
USP48-213ENST00000529637 ARL6IP4Q66PJ3 421 aaKnown RBP15.72■□□□□ 0.11
USP48-213ENST00000529637 CCDC70Q6NSX1 233 aa15.72■□□□□ 0.11
USP48-213ENST00000529637 KLC4Q9NSK0 619 aa15.72■□□□□ 0.11
USP48-213ENST00000529637 TCP11L1Q9NUJ3 509 aa15.72■□□□□ 0.11
USP48-213ENST00000529637 NFU1Q9UMS0 254 aa15.72■□□□□ 0.11
USP48-213ENST00000529637 PLCH1Q4KWH8 1693 aa15.72■□□□□ 0.11
USP48-213ENST00000529637 PSMA7O14818 248 aa15.72■□□□□ 0.11
USP48-213ENST00000529637 CCNT1O60563 726 aaKnown RBP15.72■□□□□ 0.11
USP48-213ENST00000529637 RPS6KA4O75676 772 aa15.72■□□□□ 0.11
USP48-213ENST00000529637 GLI1P08151 1106 aa15.72■□□□□ 0.11
USP48-213ENST00000529637 CYLC1P35663 651 aaPredicted RBP15.72■□□□□ 0.11
USP48-213ENST00000529637 CCDC13Q8IYE1 715 aa15.72■□□□□ 0.11
USP48-213ENST00000529637 OSBPL9Q96SU4 736 aa15.72■□□□□ 0.11
USP48-213ENST00000529637 TMEM47Q9BQJ4 181 aa15.72■□□□□ 0.11
USP48-213ENST00000529637 SALL4Q9UJQ4 1053 aa15.72■□□□□ 0.11
USP48-213ENST00000529637 PHLPP1O60346 1717 aa15.71■□□□□ 0.11
USP48-213ENST00000529637 SSBP05455 408 aaKnown RBP eCLIP15.71■□□□□ 0.11
USP48-213ENST00000529637 SOGA3Q5TF21 947 aa15.71■□□□□ 0.11
USP48-213ENST00000529637 USP17L2Q6R6M4 530 aa15.71■□□□□ 0.11
USP48-213ENST00000529637 ARHGEF1Q92888 912 aaKnown RBP15.71■□□□□ 0.11
USP48-213ENST00000529637 CCT8L2Q96SF2 557 aa15.71■□□□□ 0.11
USP48-213ENST00000529637 EPN3Q9H201 632 aa15.71■□□□□ 0.11
USP48-213ENST00000529637 H7C1D1 291 aa15.71■□□□□ 0.11
USP48-213ENST00000529637 GUCY2FP51841 1108 aa15.71■□□□□ 0.11
USP48-213ENST00000529637 ASIC1P78348 528 aa15.71■□□□□ 0.11
USP48-213ENST00000529637 IFT81Q8WYA0 676 aa15.71■□□□□ 0.11
USP48-213ENST00000529637 MAD2L2Q9UI95 211 aa15.71■□□□□ 0.11
USP48-213ENST00000529637 PCDHA6Q9UN73 950 aa15.71■□□□□ 0.11
USP48-213ENST00000529637 PCDHA8Q9Y5H6 950 aa15.71■□□□□ 0.11
USP48-213ENST00000529637 PDS5AQ29RF7 1337 aaKnown RBP15.7■□□□□ 0.1
USP48-213ENST00000529637 CYTH3O43739 400 aa15.7■□□□□ 0.1
USP48-213ENST00000529637 IPO7O95373 1038 aaKnown RBP15.7■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms