RNA–Protein interactions for RNA: ENST00000515572.5

SNF8-215, Transcript of SNF8, ESCRT-II complex subunit, human

TSL 2

Gene SNF8, Length 687 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SNF8-215	ENST00000515572	GNA11	P29992	359 aa		13.67	□□□□□ -0.22
SNF8-215	ENST00000515572	ST3GAL1	Q11201	340 aa		13.67	□□□□□ -0.22
SNF8-215	ENST00000515572	TRIM32	Q13049	653 aa		13.67	□□□□□ -0.22
SNF8-215	ENST00000515572	ARHGEF16	Q5VV41	709 aa		13.67	□□□□□ -0.22
SNF8-215	ENST00000515572	FCHSD1	Q86WN1	690 aa		13.67	□□□□□ -0.22
SNF8-215	ENST00000515572	BICD2	Q8TD16	824 aa		13.67	□□□□□ -0.22
SNF8-215	ENST00000515572	TAAR1	Q96RJ0	339 aa		13.67	□□□□□ -0.22
SNF8-215	ENST00000515572	C6orf50	Q9HD87	102 aa		13.67	□□□□□ -0.22
SNF8-215	ENST00000515572	PXMP2	Q9NR77	195 aa		13.67	□□□□□ -0.22
SNF8-215	ENST00000515572	CDKN2AIP	Q9NXV6	580 aa	Predicted RBP	13.67	□□□□□ -0.22
SNF8-215	ENST00000515572	SPDYE3	A6NKU9	549 aa		13.66	□□□□□ -0.22
SNF8-215	ENST00000515572	MSC	O60682	206 aa		13.66	□□□□□ -0.22
SNF8-215	ENST00000515572	SNAI1	O95863	264 aa	Predicted RBP	13.66	□□□□□ -0.22
SNF8-215	ENST00000515572	FOS	P01100	380 aa	Predicted RBP	13.66	□□□□□ -0.22
SNF8-215	ENST00000515572	CCL5	P13501	91 aa		13.66	□□□□□ -0.22
SNF8-215	ENST00000515572	HMGN5	P82970	282 aa	Known RBP	13.66	□□□□□ -0.22
SNF8-215	ENST00000515572	PDE4D	Q08499	809 aa		13.66	□□□□□ -0.22
SNF8-215	ENST00000515572	GALNT17	Q6IS24	598 aa		13.66	□□□□□ -0.22
SNF8-215	ENST00000515572	USP17L6P	Q6QN14	398 aa		13.66	□□□□□ -0.22
SNF8-215	ENST00000515572	XRN2	Q9H0D6	950 aa	Known RBP eCLIP	13.66	□□□□□ -0.22
SNF8-215	ENST00000515572	RNF208	Q9H0X6	261 aa		13.66	□□□□□ -0.22
SNF8-215	ENST00000515572	EHMT1	Q9H9B1	1298 aa		13.66	□□□□□ -0.22
SNF8-215	ENST00000515572	VTA1	Q9NP79	307 aa		13.66	□□□□□ -0.22
SNF8-215	ENST00000515572	VPS54	Q9P1Q0	977 aa		13.66	□□□□□ -0.22
SNF8-215	ENST00000515572	FRMPD4	Q14CM0	1322 aa		13.65	□□□□□ -0.22
SNF8-215	ENST00000515572	HTT	P42858	3142 aa		13.65	□□□□□ -0.22
SNF8-215	ENST00000515572	JAK2	O60674	1132 aa		13.65	□□□□□ -0.22
SNF8-215	ENST00000515572	CAPN2	P17655	700 aa		13.65	□□□□□ -0.22
SNF8-215	ENST00000515572	EIF2AK2	P19525	551 aa	Known RBP	13.65	□□□□□ -0.22
SNF8-215	ENST00000515572	NLRP5	P59047	1200 aa		13.65	□□□□□ -0.22
SNF8-215	ENST00000515572	AP3B2	Q13367	1082 aa		13.65	□□□□□ -0.22
SNF8-215	ENST00000515572	ACVR2B	Q13705	512 aa		13.65	□□□□□ -0.22
SNF8-215	ENST00000515572	STXBP2	Q15833	593 aa		13.65	□□□□□ -0.22
SNF8-215	ENST00000515572	XRRA1	Q6P2D8	792 aa		13.65	□□□□□ -0.22
SNF8-215	ENST00000515572	SNX21	Q969T3	373 aa		13.65	□□□□□ -0.22
SNF8-215	ENST00000515572	PDCD2L	Q9BRP1	358 aa		13.65	□□□□□ -0.22
SNF8-215	ENST00000515572	ALG1	Q9BT22	464 aa		13.65	□□□□□ -0.22
SNF8-215	ENST00000515572	TMEM106C	Q9BVX2	250 aa		13.65	□□□□□ -0.22
SNF8-215	ENST00000515572	UNC93B1	Q9H1C4	597 aa		13.65	□□□□□ -0.22
SNF8-215	ENST00000515572	PAK6	Q9NQU5	681 aa	Predicted RBP	13.65	□□□□□ -0.22
SNF8-215	ENST00000515572	SEPT4	O43236	478 aa		13.64	□□□□□ -0.23
SNF8-215	ENST00000515572	GJB1	P08034	283 aa		13.64	□□□□□ -0.23
SNF8-215	ENST00000515572	NR3C2	P08235	984 aa		13.64	□□□□□ -0.23
SNF8-215	ENST00000515572	ZNF865	P0CJ78	1059 aa	Predicted RBP	13.64	□□□□□ -0.23
SNF8-215	ENST00000515572	FDPS	P14324	419 aa	Known RBP	13.64	□□□□□ -0.23
SNF8-215	ENST00000515572	AKR1A1	P14550	325 aa		13.64	□□□□□ -0.23
SNF8-215	ENST00000515572	CNGA1	P29973	690 aa		13.64	□□□□□ -0.23
SNF8-215	ENST00000515572	CCND3	P30281	292 aa	Predicted RBP	13.64	□□□□□ -0.23
SNF8-215	ENST00000515572	CLK2	P49760	499 aa	Known RBP	13.64	□□□□□ -0.23
SNF8-215	ENST00000515572	PGM5	Q15124	567 aa		13.64	□□□□□ -0.23
SNF8-215	ENST00000515572	MTFR1	Q15390	333 aa		13.64	□□□□□ -0.23
SNF8-215	ENST00000515572	UBE2S	Q16763	222 aa		13.64	□□□□□ -0.23
SNF8-215	ENST00000515572	REXO1	Q8N1G1	1221 aa	Known RBP	13.64	□□□□□ -0.23
SNF8-215	ENST00000515572	TRPV1	Q8NER1	839 aa		13.64	□□□□□ -0.23
SNF8-215	ENST00000515572	AIFM3	Q96NN9	605 aa		13.64	□□□□□ -0.23
SNF8-215	ENST00000515572	KATNBL1	Q9H079	304 aa		13.64	□□□□□ -0.23
SNF8-215	ENST00000515572	ZHX1	Q9UKY1	873 aa	Predicted RBP	13.64	□□□□□ -0.23
SNF8-215	ENST00000515572	PCDHA6	Q9UN73	950 aa		13.64	□□□□□ -0.23
SNF8-215	ENST00000515572	ZSCAN21	Q9Y5A6	473 aa	Predicted RBP	13.64	□□□□□ -0.23
SNF8-215	ENST00000515572	PCDHA8	Q9Y5H6	950 aa		13.64	□□□□□ -0.23
SNF8-215	ENST00000515572	EIF3J	O75822	258 aa	Known RBP	13.63	□□□□□ -0.23
SNF8-215	ENST00000515572	STAM2	O75886	525 aa		13.63	□□□□□ -0.23
SNF8-215	ENST00000515572	MYC	P01106	439 aa	Predicted RBP	13.63	□□□□□ -0.23
SNF8-215	ENST00000515572	CCND2	P30279	289 aa		13.63	□□□□□ -0.23
SNF8-215	ENST00000515572	TRIM29	Q14134	588 aa		13.63	□□□□□ -0.23
SNF8-215	ENST00000515572	PRAMEF19	Q5SWL8	479 aa		13.63	□□□□□ -0.23
SNF8-215	ENST00000515572	PCNX4	Q63HM2	1172 aa		13.63	□□□□□ -0.23
SNF8-215	ENST00000515572	VSIG10L	Q86VR7	867 aa		13.63	□□□□□ -0.23
SNF8-215	ENST00000515572	FAM184A	Q8NB25	1140 aa		13.63	□□□□□ -0.23
SNF8-215	ENST00000515572	DAGLB	Q8NCG7	672 aa		13.63	□□□□□ -0.23
SNF8-215	ENST00000515572	PHF20	Q9BVI0	1012 aa		13.63	□□□□□ -0.23
SNF8-215	ENST00000515572	DDX20	Q9UHI6	824 aa	Known RBP	13.63	□□□□□ -0.23
SNF8-215	ENST00000515572	FAM184B	Q9ULE4	1060 aa		13.63	□□□□□ -0.23
SNF8-215	ENST00000515572	PCDHA4	Q9UN74	947 aa		13.63	□□□□□ -0.23
SNF8-215	ENST00000515572	KIF3A	Q9Y496	699 aa		13.63	□□□□□ -0.23
SNF8-215	ENST00000515572	CCDC85C	A6NKD9	419 aa		13.62	□□□□□ -0.23
SNF8-215	ENST00000515572		K7ELQ4	463 aa	Predicted RBP	13.62	□□□□□ -0.23
SNF8-215	ENST00000515572	GJA8	P48165	433 aa		13.62	□□□□□ -0.23
SNF8-215	ENST00000515572	CUL4A	Q13619	759 aa		13.62	□□□□□ -0.23
SNF8-215	ENST00000515572	CCDC144B	Q3MJ40	725 aa		13.62	□□□□□ -0.23
SNF8-215	ENST00000515572	IQSEC1	Q6DN90	963 aa		13.62	□□□□□ -0.23
SNF8-215	ENST00000515572	EEPD1	Q7L9B9	569 aa		13.62	□□□□□ -0.23
SNF8-215	ENST00000515572	FBXO16	Q8IX29	292 aa	Predicted RBP	13.62	□□□□□ -0.23
SNF8-215	ENST00000515572	BLID	Q8IZY5	108 aa		13.62	□□□□□ -0.23
SNF8-215	ENST00000515572	SHISA4	Q96DD7	197 aa		13.62	□□□□□ -0.23
SNF8-215	ENST00000515572	DEFB118	Q96PH6	123 aa		13.62	□□□□□ -0.23
SNF8-215	ENST00000515572	ANO3	Q9BYT9	981 aa		13.62	□□□□□ -0.23
SNF8-215	ENST00000515572	MYH7B	A7E2Y1	1941 aa		13.62	□□□□□ -0.23
SNF8-215	ENST00000515572	RBM47	A0AV96	593 aa	Known RBP	13.61	□□□□□ -0.23
SNF8-215	ENST00000515572	SGPL1	O95470	568 aa		13.61	□□□□□ -0.23
SNF8-215	ENST00000515572	RARB	P10826	455 aa		13.61	□□□□□ -0.23
SNF8-215	ENST00000515572	MYCL	P12524	364 aa	Predicted RBP	13.61	□□□□□ -0.23
SNF8-215	ENST00000515572	SREBF1	P36956	1147 aa		13.61	□□□□□ -0.23
SNF8-215	ENST00000515572	JAKMIP3	Q5VZ66	844 aa		13.61	□□□□□ -0.23
SNF8-215	ENST00000515572	TAPT1	Q6NXT6	567 aa		13.61	□□□□□ -0.23
SNF8-215	ENST00000515572	KCNV1	Q6PIU1	500 aa		13.61	□□□□□ -0.23
SNF8-215	ENST00000515572	HSCB	Q8IWL3	235 aa		13.61	□□□□□ -0.23
SNF8-215	ENST00000515572	IL31RA	Q8NI17	732 aa		13.61	□□□□□ -0.23
SNF8-215	ENST00000515572	SCFD2	Q8WU76	684 aa		13.61	□□□□□ -0.23
SNF8-215	ENST00000515572	C8orf76	Q96K31	380 aa		13.61	□□□□□ -0.23

Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms