RNA–Protein interactions for RNA: ENST00000514901.5

NUP54-216, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 500 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-216ENST00000514901 SH2B1Q9NRF2 756 aaPredicted RBP16.41■□□□□ 0.22
NUP54-216ENST00000514901 COL20A1Q9P218 1284 aa16.41■□□□□ 0.22
NUP54-216ENST00000514901 DDX20Q9UHI6 824 aaKnown RBP16.41■□□□□ 0.22
NUP54-216ENST00000514901 FAM184BQ9ULE4 1060 aa16.41■□□□□ 0.22
NUP54-216ENST00000514901 ASTN1O14525 1302 aa16.41■□□□□ 0.22
NUP54-216ENST00000514901 DEXIO95424 95 aa16.4■□□□□ 0.22
NUP54-216ENST00000514901 AKR1A1P14550 325 aa16.4■□□□□ 0.22
NUP54-216ENST00000514901 MCM2P49736 904 aa16.4■□□□□ 0.22
NUP54-216ENST00000514901 SOX10P56693 466 aa16.4■□□□□ 0.22
NUP54-216ENST00000514901 PKN1Q16512 942 aa16.4■□□□□ 0.22
NUP54-216ENST00000514901 RIC8AQ9NPQ8 531 aa16.4■□□□□ 0.22
NUP54-216ENST00000514901 SH3GLB2Q9NR46 395 aa16.4■□□□□ 0.22
NUP54-216ENST00000514901 PXMP2Q9NR77 195 aa16.4■□□□□ 0.22
NUP54-216ENST00000514901 ZHX1Q9UKY1 873 aaPredicted RBP16.4■□□□□ 0.22
NUP54-216ENST00000514901 MCM3APO60318 1980 aa16.4■□□□□ 0.22
NUP54-216ENST00000514901 ESYT2A0FGR8 921 aa16.39■□□□□ 0.21
NUP54-216ENST00000514901 POTEFA5A3E0 1075 aa16.39■□□□□ 0.21
NUP54-216ENST00000514901 SMCO2A6NFE2 343 aa16.39■□□□□ 0.21
NUP54-216ENST00000514901 MEIS2O14770 477 aa16.39■□□□□ 0.21
NUP54-216ENST00000514901 GNA11P29992 359 aa16.39■□□□□ 0.21
NUP54-216ENST00000514901 ADCY7P51828 1080 aa16.39■□□□□ 0.21
NUP54-216ENST00000514901 STXBP2Q15833 593 aa16.39■□□□□ 0.21
NUP54-216ENST00000514901 LHX8Q68G74 356 aa16.39■□□□□ 0.21
NUP54-216ENST00000514901 MCTP2Q6DN12 878 aa16.39■□□□□ 0.21
NUP54-216ENST00000514901 IQSEC1Q6DN90 963 aa16.39■□□□□ 0.21
NUP54-216ENST00000514901 FCHSD1Q86WN1 690 aa16.39■□□□□ 0.21
NUP54-216ENST00000514901 CCDC148Q8NFR7 591 aa16.39■□□□□ 0.21
NUP54-216ENST00000514901 KATNBL1Q9H079 304 aa16.39■□□□□ 0.21
NUP54-216ENST00000514901 OGDHLQ9ULD0 1010 aa16.39■□□□□ 0.21
NUP54-216ENST00000514901 STK36Q9NRP7 1315 aa16.39■□□□□ 0.21
NUP54-216ENST00000514901 EIF3JO75822 258 aaKnown RBP16.38■□□□□ 0.21
NUP54-216ENST00000514901 FOSP01100 380 aaPredicted RBP16.38■□□□□ 0.21
NUP54-216ENST00000514901 NR3C2P08235 984 aa16.38■□□□□ 0.21
NUP54-216ENST00000514901 RARBP10826 455 aa16.38■□□□□ 0.21
NUP54-216ENST00000514901 EN2P19622 333 aaPredicted RBP16.38■□□□□ 0.21
NUP54-216ENST00000514901 TYW1BQ6NUM6 668 aa16.38■□□□□ 0.21
NUP54-216ENST00000514901 XRRA1Q6P2D8 792 aa16.38■□□□□ 0.21
NUP54-216ENST00000514901 USP17L6PQ6QN14 398 aa16.38■□□□□ 0.21
NUP54-216ENST00000514901 NECAB1Q8N987 351 aa16.38■□□□□ 0.21
NUP54-216ENST00000514901 ANKLE1Q8NAG6 615 aa16.38■□□□□ 0.21
NUP54-216ENST00000514901 BICD2Q8TD16 824 aa16.38■□□□□ 0.21
NUP54-216ENST00000514901 WASF1Q92558 559 aa16.38■□□□□ 0.21
NUP54-216ENST00000514901 PDCD2LQ9BRP1 358 aa16.38■□□□□ 0.21
NUP54-216ENST00000514901 LLPHQ9BRT6 129 aaKnown RBP16.38■□□□□ 0.21
NUP54-216ENST00000514901 ZMYND12Q9H0C1 365 aa16.38■□□□□ 0.21
NUP54-216ENST00000514901 EHMT1Q9H9B1 1298 aa16.38■□□□□ 0.21
NUP54-216ENST00000514901 C6orf50Q9HD87 102 aa16.38■□□□□ 0.21
NUP54-216ENST00000514901 LCTP09848 1927 aa16.38■□□□□ 0.21
NUP54-216ENST00000514901 RBBP6Q7Z6E9 1792 aaKnown RBP16.38■□□□□ 0.21
NUP54-216ENST00000514901 RBM47A0AV96 593 aaKnown RBP16.37■□□□□ 0.21
NUP54-216ENST00000514901 SPDYE3A6NKU9 549 aa16.37■□□□□ 0.21
NUP54-216ENST00000514901 CAPN15O75808 1086 aa16.37■□□□□ 0.21
NUP54-216ENST00000514901 LARGE1O95461 756 aa16.37■□□□□ 0.21
NUP54-216ENST00000514901 XBP1P17861 261 aa16.37■□□□□ 0.21
NUP54-216ENST00000514901 EIF2AK2P19525 551 aaKnown RBP16.37■□□□□ 0.21
NUP54-216ENST00000514901 CCDC144BQ3MJ40 725 aa16.37■□□□□ 0.21
NUP54-216ENST00000514901 IFFO2Q5TF58 517 aa16.37■□□□□ 0.21
NUP54-216ENST00000514901 TAPT1Q6NXT6 567 aa16.37■□□□□ 0.21
NUP54-216ENST00000514901 VSIG10LQ86VR7 867 aa16.37■□□□□ 0.21
NUP54-216ENST00000514901 ARRDC4Q8NCT1 418 aa16.37■□□□□ 0.21
NUP54-216ENST00000514901 PPFIA3O75145 1194 aa16.36■□□□□ 0.21
NUP54-216ENST00000514901 DUSP11O75319 330 aaKnown RBP16.36■□□□□ 0.21
NUP54-216ENST00000514901 STAM2O75886 525 aa16.36■□□□□ 0.21
NUP54-216ENST00000514901 CTDNEP1O95476 244 aa16.36■□□□□ 0.21
NUP54-216ENST00000514901 CCND2P30279 289 aa16.36■□□□□ 0.21
NUP54-216ENST00000514901 RGS19P49795 217 aa16.36■□□□□ 0.21
NUP54-216ENST00000514901 TNFAIP2Q03169 654 aa16.36■□□□□ 0.21
NUP54-216ENST00000514901 AP3B2Q13367 1082 aa16.36■□□□□ 0.21
NUP54-216ENST00000514901 PGM5Q15124 567 aa16.36■□□□□ 0.21
NUP54-216ENST00000514901 GALNT17Q6IS24 598 aa16.36■□□□□ 0.21
NUP54-216ENST00000514901 EEPD1Q7L9B9 569 aa16.36■□□□□ 0.21
NUP54-216ENST00000514901 FBXO16Q8IX29 292 aaPredicted RBP16.36■□□□□ 0.21
NUP54-216ENST00000514901 SCFD2Q8WU76 684 aa16.36■□□□□ 0.21
NUP54-216ENST00000514901 SPC25Q9HBM1 224 aa16.36■□□□□ 0.21
NUP54-216ENST00000514901 ORC3Q9UBD5 711 aaPredicted RBP16.36■□□□□ 0.21
NUP54-216ENST00000514901 Q9Y3F1 56 aa16.36■□□□□ 0.21
NUP54-216ENST00000514901 FRMPD4Q14CM0 1322 aa16.36■□□□□ 0.21
NUP54-216ENST00000514901 BRCA2P51587 3418 aa16.36■□□□□ 0.21
NUP54-216ENST00000514901 MYCLP12524 364 aaPredicted RBP16.35■□□□□ 0.21
NUP54-216ENST00000514901 NLRP5P59047 1200 aa16.35■□□□□ 0.21
NUP54-216ENST00000514901 UBE2SQ16763 222 aa16.35■□□□□ 0.21
NUP54-216ENST00000514901 KCNV1Q6PIU1 500 aa16.35■□□□□ 0.21
NUP54-216ENST00000514901 NSUN7Q8NE18 718 aaKnown RBP16.35■□□□□ 0.21
NUP54-216ENST00000514901 SHISA4Q96DD7 197 aa16.35■□□□□ 0.21
NUP54-216ENST00000514901 PCDHA6Q9UN73 950 aa16.35■□□□□ 0.21
NUP54-216ENST00000514901 PCDHA8Q9Y5H6 950 aa16.35■□□□□ 0.21
NUP54-216ENST00000514901 NKRFO15226 690 aaKnown RBP eCLIP16.34■□□□□ 0.21
NUP54-216ENST00000514901 CLK2P49760 499 aaKnown RBP16.34■□□□□ 0.21
NUP54-216ENST00000514901 TTLL4Q14679 1199 aa16.34■□□□□ 0.21
NUP54-216ENST00000514901 PCNX4Q63HM2 1172 aa16.34■□□□□ 0.21
NUP54-216ENST00000514901 WDR11Q9BZH6 1224 aa16.34■□□□□ 0.21
NUP54-216ENST00000514901 XPNPEP3Q9NQH7 507 aa16.34■□□□□ 0.21
NUP54-216ENST00000514901 PDGFCQ9NRA1 345 aa16.34■□□□□ 0.21
NUP54-216ENST00000514901 VPS54Q9P1Q0 977 aa16.34■□□□□ 0.21
NUP54-216ENST00000514901 DDX49Q9Y6V7 483 aaKnown RBP16.34■□□□□ 0.21
NUP54-216ENST00000514901 TGFB3P10600 412 aa16.33■□□□□ 0.2
NUP54-216ENST00000514901 ADCYAP1R1P41586 468 aa16.33■□□□□ 0.2
NUP54-216ENST00000514901 HMGN5P82970 282 aaKnown RBP16.33■□□□□ 0.2
NUP54-216ENST00000514901 GNPTABQ3T906 1256 aa16.33■□□□□ 0.2
NUP54-216ENST00000514901 DUSP28Q4G0W2 176 aa16.33■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms