RNA–Protein interactions for RNA: ENST00000503923.1

VCAN-205, Transcript of versican, humanhuman

TSL 4

Gene VCAN, Length 498 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-205ENST00000503923 TMX3Q96JJ7 454 aa12.79□□□□□ -0.36
VCAN-205ENST00000503923 IWS1Q96ST2 819 aa12.79□□□□□ -0.36
VCAN-205ENST00000503923 RNF208Q9H0X6 261 aa12.79□□□□□ -0.36
VCAN-205ENST00000503923 UNC93B1Q9H1C4 597 aa12.79□□□□□ -0.36
VCAN-205ENST00000503923 C6orf50Q9HD87 102 aa12.79□□□□□ -0.36
VCAN-205ENST00000503923 PXMP2Q9NR77 195 aa12.79□□□□□ -0.36
VCAN-205ENST00000503923 CENPFP49454 3210 aa12.79□□□□□ -0.36
VCAN-205ENST00000503923 MCM3APO60318 1980 aa12.79□□□□□ -0.36
VCAN-205ENST00000503923 XBP1P17861 261 aa12.78□□□□□ -0.36
VCAN-205ENST00000503923 EDNRBP24530 442 aa12.78□□□□□ -0.36
VCAN-205ENST00000503923 GNA11P29992 359 aa12.78□□□□□ -0.36
VCAN-205ENST00000503923 PDE4DQ08499 809 aa12.78□□□□□ -0.36
VCAN-205ENST00000503923 FCHSD1Q86WN1 690 aa12.78□□□□□ -0.36
VCAN-205ENST00000503923 TMEM106CQ9BVX2 250 aa12.78□□□□□ -0.36
VCAN-205ENST00000503923 ZMYND12Q9H0C1 365 aa12.78□□□□□ -0.36
VCAN-205ENST00000503923 XRN2Q9H0D6 950 aaKnown RBP eCLIP12.78□□□□□ -0.36
VCAN-205ENST00000503923 ABHD16BQ9H3Z7 469 aa12.78□□□□□ -0.36
VCAN-205ENST00000503923 VPS54Q9P1Q0 977 aa12.78□□□□□ -0.36
VCAN-205ENST00000503923 SPDYE3A6NKU9 549 aa12.77□□□□□ -0.37
VCAN-205ENST00000503923 JAK2O60674 1132 aa12.77□□□□□ -0.37
VCAN-205ENST00000503923 ZNF865P0CJ78 1059 aaPredicted RBP12.77□□□□□ -0.37
VCAN-205ENST00000503923 FDPSP14324 419 aaKnown RBP12.77□□□□□ -0.37
VCAN-205ENST00000503923 EIF2AK2P19525 551 aaKnown RBP12.77□□□□□ -0.37
VCAN-205ENST00000503923 CNGA1P29973 690 aa12.77□□□□□ -0.37
VCAN-205ENST00000503923 CCND3P30281 292 aaPredicted RBP12.77□□□□□ -0.37
VCAN-205ENST00000503923 NLRP5P59047 1200 aa12.77□□□□□ -0.37
VCAN-205ENST00000503923 HMGN5P82970 282 aaKnown RBP12.77□□□□□ -0.37
VCAN-205ENST00000503923 ACVR2BQ13705 512 aa12.77□□□□□ -0.37
VCAN-205ENST00000503923 UBE2SQ16763 222 aa12.77□□□□□ -0.37
VCAN-205ENST00000503923 PRAMEF19Q5SWL8 479 aa12.77□□□□□ -0.37
VCAN-205ENST00000503923 TRPV1Q8NER1 839 aa12.77□□□□□ -0.37
VCAN-205ENST00000503923 BICD2Q8TD16 824 aa12.77□□□□□ -0.37
VCAN-205ENST00000503923 PDCD2LQ9BRP1 358 aa12.77□□□□□ -0.37
VCAN-205ENST00000503923 EHMT1Q9H9B1 1298 aa12.77□□□□□ -0.37
VCAN-205ENST00000503923 VTA1Q9NP79 307 aa12.77□□□□□ -0.37
VCAN-205ENST00000503923 PAK6Q9NQU5 681 aaPredicted RBP12.77□□□□□ -0.37
VCAN-205ENST00000503923 ZHX1Q9UKY1 873 aaPredicted RBP12.77□□□□□ -0.37
VCAN-205ENST00000503923 CCDC85CA6NKD9 419 aa12.76□□□□□ -0.37
VCAN-205ENST00000503923 SEPT4O43236 478 aa12.76□□□□□ -0.37
VCAN-205ENST00000503923 MSCO60682 206 aa12.76□□□□□ -0.37
VCAN-205ENST00000503923 FOSP01100 380 aaPredicted RBP12.76□□□□□ -0.37
VCAN-205ENST00000503923 GJB1P08034 283 aa12.76□□□□□ -0.37
VCAN-205ENST00000503923 NR3C2P08235 984 aa12.76□□□□□ -0.37
VCAN-205ENST00000503923 AKR1A1P14550 325 aa12.76□□□□□ -0.37
VCAN-205ENST00000503923 AP3B2Q13367 1082 aa12.76□□□□□ -0.37
VCAN-205ENST00000503923 PGM5Q15124 567 aa12.76□□□□□ -0.37
VCAN-205ENST00000503923 STXBP2Q15833 593 aa12.76□□□□□ -0.37
VCAN-205ENST00000503923 MCTP2Q6DN12 878 aa12.76□□□□□ -0.37
VCAN-205ENST00000503923 GALNT17Q6IS24 598 aa12.76□□□□□ -0.37
VCAN-205ENST00000503923 SHISA4Q96DD7 197 aa12.76□□□□□ -0.37
VCAN-205ENST00000503923 AIFM3Q96NN9 605 aa12.76□□□□□ -0.37
VCAN-205ENST00000503923 ALG1Q9BT22 464 aa12.76□□□□□ -0.37
VCAN-205ENST00000503923 KATNBL1Q9H079 304 aa12.76□□□□□ -0.37
VCAN-205ENST00000503923 DDX20Q9UHI6 824 aaKnown RBP12.76□□□□□ -0.37
VCAN-205ENST00000503923 PCDHA6Q9UN73 950 aa12.76□□□□□ -0.37
VCAN-205ENST00000503923 PCDHA8Q9Y5H6 950 aa12.76□□□□□ -0.37
VCAN-205ENST00000503923 DDX49Q9Y6V7 483 aaKnown RBP12.76□□□□□ -0.37
VCAN-205ENST00000503923 FRMPD4Q14CM0 1322 aa12.76□□□□□ -0.37
VCAN-205ENST00000503923 LRRC37A2A6NM11 1700 aa12.75□□□□□ -0.37
VCAN-205ENST00000503923 DTNBO60941 627 aa12.75□□□□□ -0.37
VCAN-205ENST00000503923 EIF3JO75822 258 aaKnown RBP12.75□□□□□ -0.37
VCAN-205ENST00000503923 CAPN2P17655 700 aa12.75□□□□□ -0.37
VCAN-205ENST00000503923 CCND2P30279 289 aa12.75□□□□□ -0.37
VCAN-205ENST00000503923 CLK2P49760 499 aaKnown RBP12.75□□□□□ -0.37
VCAN-205ENST00000503923 EEPD1Q7L9B9 569 aa12.75□□□□□ -0.37
VCAN-205ENST00000503923 VSIG10LQ86VR7 867 aa12.75□□□□□ -0.37
VCAN-205ENST00000503923 FBXO16Q8IX29 292 aaPredicted RBP12.75□□□□□ -0.37
VCAN-205ENST00000503923 REXO1Q8N1G1 1221 aaKnown RBP12.75□□□□□ -0.37
VCAN-205ENST00000503923 FAM184AQ8NB25 1140 aa12.75□□□□□ -0.37
VCAN-205ENST00000503923 SNX21Q969T3 373 aa12.75□□□□□ -0.37
VCAN-205ENST00000503923 FAM184BQ9ULE4 1060 aa12.75□□□□□ -0.37
VCAN-205ENST00000503923 PCDHA4Q9UN74 947 aa12.75□□□□□ -0.37
VCAN-205ENST00000503923 STAM2O75886 525 aa12.74□□□□□ -0.37
VCAN-205ENST00000503923 SGPL1O95470 568 aa12.74□□□□□ -0.37
VCAN-205ENST00000503923 MYCLP12524 364 aaPredicted RBP12.74□□□□□ -0.37
VCAN-205ENST00000503923 GJA8P48165 433 aa12.74□□□□□ -0.37
VCAN-205ENST00000503923 TRIM29Q14134 588 aa12.74□□□□□ -0.37
VCAN-205ENST00000503923 CCDC144BQ3MJ40 725 aa12.74□□□□□ -0.37
VCAN-205ENST00000503923 JAKMIP3Q5VZ66 844 aa12.74□□□□□ -0.37
VCAN-205ENST00000503923 TAPT1Q6NXT6 567 aa12.74□□□□□ -0.37
VCAN-205ENST00000503923 XRRA1Q6P2D8 792 aa12.74□□□□□ -0.37
VCAN-205ENST00000503923 BLIDQ8IZY5 108 aa12.74□□□□□ -0.37
VCAN-205ENST00000503923 DAGLBQ8NCG7 672 aa12.74□□□□□ -0.37
VCAN-205ENST00000503923 U2AF1L4Q8WU68 220 aaKnown RBP12.74□□□□□ -0.37
VCAN-205ENST00000503923 DEFB118Q96PH6 123 aa12.74□□□□□ -0.37
VCAN-205ENST00000503923 PHF20Q9BVI0 1012 aa12.74□□□□□ -0.37
VCAN-205ENST00000503923 ANO3Q9BYT9 981 aa12.74□□□□□ -0.37
VCAN-205ENST00000503923 TMEM260Q9NX78 707 aa12.74□□□□□ -0.37
VCAN-205ENST00000503923 KCNJ14Q9UNX9 436 aa12.74□□□□□ -0.37
VCAN-205ENST00000503923 KIF3AQ9Y496 699 aa12.74□□□□□ -0.37
VCAN-205ENST00000503923 ZSCAN21Q9Y5A6 473 aaPredicted RBP12.74□□□□□ -0.37
VCAN-205ENST00000503923 KIAA0100Q14667 2235 aaKnown RBP12.74□□□□□ -0.37
VCAN-205ENST00000503923 RBM47A0AV96 593 aaKnown RBP12.73□□□□□ -0.37
VCAN-205ENST00000503923 K7ELQ4 463 aaPredicted RBP12.73□□□□□ -0.37
VCAN-205ENST00000503923 RARBP10826 455 aa12.73□□□□□ -0.37
VCAN-205ENST00000503923 CUL4AQ13619 759 aa12.73□□□□□ -0.37
VCAN-205ENST00000503923 PCNX4Q63HM2 1172 aa12.73□□□□□ -0.37
VCAN-205ENST00000503923 LHX8Q68G74 356 aa12.73□□□□□ -0.37
VCAN-205ENST00000503923 IQSEC1Q6DN90 963 aa12.73□□□□□ -0.37
VCAN-205ENST00000503923 HSCBQ8IWL3 235 aa12.73□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms