RNA–Protein interactions for RNA: ENST00000494623.1

CHMP3-209, Transcript of charged multivesicular body protein 3, humanhuman

TSL 2

Gene CHMP3, Length 2,724 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3-209ENST00000494623 NAPGQ99747 312 aaPredicted RBP12.52□□□□□ -0.41
CHMP3-209ENST00000494623 RAB34Q9BZG1 259 aa12.52□□□□□ -0.41
CHMP3-209ENST00000494623 TMX4Q9H1E5 349 aaPredicted RBP12.52□□□□□ -0.41
CHMP3-209ENST00000494623 RIC8AQ9NPQ8 531 aa12.52□□□□□ -0.41
CHMP3-209ENST00000494623 PLIN4Q96Q06 1357 aa12.51□□□□□ -0.41
CHMP3-209ENST00000494623 RASSF10A6NK89 507 aa12.51□□□□□ -0.41
CHMP3-209ENST00000494623 FAM196BA6NMK8 535 aa12.51□□□□□ -0.41
CHMP3-209ENST00000494623 UTP14CQ5TAP6 766 aaKnown RBP12.51□□□□□ -0.41
CHMP3-209ENST00000494623 KRT27Q7Z3Y8 459 aa12.51□□□□□ -0.41
CHMP3-209ENST00000494623 DBNDD1Q9H9R9 158 aa12.51□□□□□ -0.41
CHMP3-209ENST00000494623 PRDM4Q9UKN5 801 aa12.51□□□□□ -0.41
CHMP3-209ENST00000494623 PCDHAC2Q9Y5I4 1007 aa12.51□□□□□ -0.41
CHMP3-209ENST00000494623 NPR1P16066 1061 aa12.51□□□□□ -0.41
CHMP3-209ENST00000494623 HSPA1LP34931 641 aa12.51□□□□□ -0.41
CHMP3-209ENST00000494623 MRPL12P52815 198 aaKnown RBP12.51□□□□□ -0.41
CHMP3-209ENST00000494623 PDIA5Q14554 519 aa12.51□□□□□ -0.41
CHMP3-209ENST00000494623 KCNK18Q7Z418 384 aa12.51□□□□□ -0.41
CHMP3-209ENST00000494623 CEP112Q8N8E3 955 aa12.51□□□□□ -0.41
CHMP3-209ENST00000494623 CUL5Q93034 780 aa12.51□□□□□ -0.41
CHMP3-209ENST00000494623 PSTPIP2Q9H939 334 aa12.51□□□□□ -0.41
CHMP3-209ENST00000494623 DDX25Q9UHL0 483 aaKnown RBP12.51□□□□□ -0.41
CHMP3-209ENST00000494623 ALDH1B1P30837 517 aa12.5□□□□□ -0.41
CHMP3-209ENST00000494623 PPP1R2P41236 205 aa12.5□□□□□ -0.41
CHMP3-209ENST00000494623 CRKP46108 304 aa12.5□□□□□ -0.41
CHMP3-209ENST00000494623 PLA2G4AP47712 749 aa12.5□□□□□ -0.41
CHMP3-209ENST00000494623 RBM5P52756 815 aaKnown RBP eCLIP12.5□□□□□ -0.41
CHMP3-209ENST00000494623 GABPB1Q06547 395 aaPredicted RBP12.5□□□□□ -0.41
CHMP3-209ENST00000494623 LRRC41Q15345 812 aa12.5□□□□□ -0.41
CHMP3-209ENST00000494623 CC2D1AQ6P1N0 951 aaPredicted RBP12.5□□□□□ -0.41
CHMP3-209ENST00000494623 UNC13DQ70J99 1090 aa12.5□□□□□ -0.41
CHMP3-209ENST00000494623 RAD54LQ92698 747 aa12.5□□□□□ -0.41
CHMP3-209ENST00000494623 ZNF622Q969S3 477 aaKnown RBP eCLIP12.5□□□□□ -0.41
CHMP3-209ENST00000494623 NUP58Q9BVL2 599 aa12.5□□□□□ -0.41
CHMP3-209ENST00000494623 ZNHIT6Q9NWK9 470 aaKnown RBP12.5□□□□□ -0.41
CHMP3-209ENST00000494623 STK17AQ9UEE5 414 aa12.5□□□□□ -0.41
CHMP3-209ENST00000494623 ZHX1Q9UKY1 873 aaPredicted RBP12.5□□□□□ -0.41
CHMP3-209ENST00000494623 ZBTB5O15062 677 aa12.5□□□□□ -0.41
CHMP3-209ENST00000494623 ERCC3P19447 782 aa12.5□□□□□ -0.41
CHMP3-209ENST00000494623 ECM1Q16610 540 aa12.5□□□□□ -0.41
CHMP3-209ENST00000494623 SHROOM1Q2M3G4 852 aaPredicted RBP12.5□□□□□ -0.41
CHMP3-209ENST00000494623 MIIPQ5JXC2 388 aa12.5□□□□□ -0.41
CHMP3-209ENST00000494623 FKBP15Q5T1M5 1219 aa12.5□□□□□ -0.41
CHMP3-209ENST00000494623 HHIPL2Q6UWX4 724 aa12.5□□□□□ -0.41
CHMP3-209ENST00000494623 ZNF771Q7L3S4 317 aaPredicted RBP12.5□□□□□ -0.41
CHMP3-209ENST00000494623 COL23A1Q86Y22 540 aaPredicted RBP12.5□□□□□ -0.41
CHMP3-209ENST00000494623 KIAA0825Q8IV33 1275 aa12.5□□□□□ -0.41
CHMP3-209ENST00000494623 NLGN1Q8N2Q7 840 aa12.5□□□□□ -0.41
CHMP3-209ENST00000494623 DDX12PQ92771 950 aa12.5□□□□□ -0.41
CHMP3-209ENST00000494623 PVALEFA0A1B0GWK0 134 aa12.49□□□□□ -0.41
CHMP3-209ENST00000494623 USP17L15C9J2P7 530 aa12.49□□□□□ -0.41
CHMP3-209ENST00000494623 USP17L13C9JLJ4 530 aa12.49□□□□□ -0.41
CHMP3-209ENST00000494623 USP17L11C9JVI0 530 aa12.49□□□□□ -0.41
CHMP3-209ENST00000494623 USP17L18D6R9N7 530 aa12.49□□□□□ -0.41
CHMP3-209ENST00000494623 USP17L22D6RA61 530 aa12.49□□□□□ -0.41
CHMP3-209ENST00000494623 USP17L17D6RBQ6 530 aa12.49□□□□□ -0.41
CHMP3-209ENST00000494623 USP17L19D6RCP7 530 aa12.49□□□□□ -0.41
CHMP3-209ENST00000494623 USP17L20D6RJB6 530 aa12.49□□□□□ -0.41
CHMP3-209ENST00000494623 USP17L24Q0WX57 530 aa12.49□□□□□ -0.41
CHMP3-209ENST00000494623 GPATCH4Q5T3I0 446 aaKnown RBP12.49□□□□□ -0.41
CHMP3-209ENST00000494623 CENPPQ6IPU0 288 aa12.49□□□□□ -0.41
CHMP3-209ENST00000494623 USP17L6PQ6QN14 398 aa12.49□□□□□ -0.41
CHMP3-209ENST00000494623 ZSCAN29Q8IWY8 852 aaPredicted RBP12.49□□□□□ -0.41
CHMP3-209ENST00000494623 HAS1Q92839 578 aa12.49□□□□□ -0.41
CHMP3-209ENST00000494623 ZNF219Q9P2Y4 722 aaPredicted RBP12.49□□□□□ -0.41
CHMP3-209ENST00000494623 MYO1AQ9UBC5 1043 aa12.49□□□□□ -0.41
CHMP3-209ENST00000494623 SSBP05455 408 aaKnown RBP eCLIP12.49□□□□□ -0.41
CHMP3-209ENST00000494623 HERVK_113P62684 666 aa12.49□□□□□ -0.41
CHMP3-209ENST00000494623 CCDC122Q5T0U0 273 aa12.49□□□□□ -0.41
CHMP3-209ENST00000494623 PPP4R3AQ6IN85 833 aa12.49□□□□□ -0.41
CHMP3-209ENST00000494623 KIAA1328Q86T90 577 aa12.49□□□□□ -0.41
CHMP3-209ENST00000494623 GLIS3Q8NEA6 775 aa12.49□□□□□ -0.41
CHMP3-209ENST00000494623 NHEJ1Q9H9Q4 299 aaPredicted RBP12.49□□□□□ -0.41
CHMP3-209ENST00000494623 ARFGAP3Q9NP61 516 aa12.49□□□□□ -0.41
CHMP3-209ENST00000494623 PCDHA12Q9UN75 941 aa12.49□□□□□ -0.41
CHMP3-209ENST00000494623 ENC1O14682 589 aa12.48□□□□□ -0.41
CHMP3-209ENST00000494623 CLK2P49760 499 aaKnown RBP12.48□□□□□ -0.41
CHMP3-209ENST00000494623 ZBED6P86452 979 aa12.48□□□□□ -0.41
CHMP3-209ENST00000494623 TUBB2AQ13885 445 aa12.48□□□□□ -0.41
CHMP3-209ENST00000494623 PPP1R18Q6NYC8 613 aa12.48□□□□□ -0.41
CHMP3-209ENST00000494623 TUBB2BQ9BVA1 445 aa12.48□□□□□ -0.41
CHMP3-209ENST00000494623 TTYH3Q9C0H2 523 aa12.48□□□□□ -0.41
CHMP3-209ENST00000494623 HAUS4Q9H6D7 363 aa12.48□□□□□ -0.41
CHMP3-209ENST00000494623 MYO6Q9UM54 1294 aa12.48□□□□□ -0.41
CHMP3-209ENST00000494623 SASH3O75995 380 aa12.48□□□□□ -0.41
CHMP3-209ENST00000494623 TBC1D8O95759 1140 aa12.48□□□□□ -0.41
CHMP3-209ENST00000494623 RHOXF2BP0C7M4 288 aa12.48□□□□□ -0.41
CHMP3-209ENST00000494623 EEF2P13639 858 aaKnown RBP12.48□□□□□ -0.41
CHMP3-209ENST00000494623 KRT83P78385 493 aa12.48□□□□□ -0.41
CHMP3-209ENST00000494623 TERF2Q15554 542 aa12.48□□□□□ -0.41
CHMP3-209ENST00000494623 VWA3BQ502W6 1294 aa12.48□□□□□ -0.41
CHMP3-209ENST00000494623 RETREG2Q8NC44 543 aa12.48□□□□□ -0.41
CHMP3-209ENST00000494623 RHOXF2Q9BQY4 288 aa12.48□□□□□ -0.41
CHMP3-209ENST00000494623 DNAJC18Q9H819 358 aa12.48□□□□□ -0.41
CHMP3-209ENST00000494623 DDTLA6NHG4 134 aaPredicted RBP12.47□□□□□ -0.41
CHMP3-209ENST00000494623 MMP10P09238 476 aa12.47□□□□□ -0.41
CHMP3-209ENST00000494623 CYLC1P35663 651 aaPredicted RBP12.47□□□□□ -0.41
CHMP3-209ENST00000494623 PDE6BP35913 854 aa12.47□□□□□ -0.41
CHMP3-209ENST00000494623 SLC1A4P43007 532 aa12.47□□□□□ -0.41
CHMP3-209ENST00000494623 SNAP25P60880 206 aa12.47□□□□□ -0.41
CHMP3-209ENST00000494623 CYP27A1Q02318 531 aa12.47□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms