RNA–Protein interactions for RNA: ENST00000489961.1

VPS13D-210, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 5

Gene VPS13D, Length 443 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-210ENST00000489961 CDKN2AIPQ9NXV6 580 aaPredicted RBP12.49□□□□□ -0.41
VPS13D-210ENST00000489961 VPS54Q9P1Q0 977 aa12.49□□□□□ -0.41
VPS13D-210ENST00000489961 COL20A1Q9P218 1284 aa12.49□□□□□ -0.41
VPS13D-210ENST00000489961 SPDYE3A6NKU9 549 aa12.48□□□□□ -0.41
VPS13D-210ENST00000489961 JAK2O60674 1132 aa12.48□□□□□ -0.41
VPS13D-210ENST00000489961 CYBAP13498 195 aa12.48□□□□□ -0.41
VPS13D-210ENST00000489961 CCL5P13501 91 aa12.48□□□□□ -0.41
VPS13D-210ENST00000489961 EIF2AK2P19525 551 aaKnown RBP12.48□□□□□ -0.41
VPS13D-210ENST00000489961 CNGA1P29973 690 aa12.48□□□□□ -0.41
VPS13D-210ENST00000489961 NLRP5P59047 1200 aa12.48□□□□□ -0.41
VPS13D-210ENST00000489961 HMGN5P82970 282 aaKnown RBP12.48□□□□□ -0.41
VPS13D-210ENST00000489961 PDE4DQ08499 809 aa12.48□□□□□ -0.41
VPS13D-210ENST00000489961 MTFR1Q15390 333 aa12.48□□□□□ -0.41
VPS13D-210ENST00000489961 UBE2SQ16763 222 aa12.48□□□□□ -0.41
VPS13D-210ENST00000489961 MCTP2Q6DN12 878 aa12.48□□□□□ -0.41
VPS13D-210ENST00000489961 BICD2Q8TD16 824 aa12.48□□□□□ -0.41
VPS13D-210ENST00000489961 MORC4Q8TE76 937 aa12.48□□□□□ -0.41
VPS13D-210ENST00000489961 ALG1Q9BT22 464 aa12.48□□□□□ -0.41
VPS13D-210ENST00000489961 TMEM106CQ9BVX2 250 aa12.48□□□□□ -0.41
VPS13D-210ENST00000489961 ZMYND12Q9H0C1 365 aa12.48□□□□□ -0.41
VPS13D-210ENST00000489961 XRN2Q9H0D6 950 aaKnown RBP eCLIP12.48□□□□□ -0.41
VPS13D-210ENST00000489961 RNF208Q9H0X6 261 aa12.48□□□□□ -0.41
VPS13D-210ENST00000489961 UNC93B1Q9H1C4 597 aa12.48□□□□□ -0.41
VPS13D-210ENST00000489961 EHMT1Q9H9B1 1298 aa12.48□□□□□ -0.41
VPS13D-210ENST00000489961 PXMP2Q9NR77 195 aa12.48□□□□□ -0.41
VPS13D-210ENST00000489961 ZHX1Q9UKY1 873 aaPredicted RBP12.48□□□□□ -0.41
VPS13D-210ENST00000489961 LRRC37A2A6NM11 1700 aa12.48□□□□□ -0.41
VPS13D-210ENST00000489961 SNAI1O95863 264 aaPredicted RBP12.47□□□□□ -0.41
VPS13D-210ENST00000489961 FOSP01100 380 aaPredicted RBP12.47□□□□□ -0.41
VPS13D-210ENST00000489961 EDNRBP24530 442 aa12.47□□□□□ -0.41
VPS13D-210ENST00000489961 CCND3P30281 292 aaPredicted RBP12.47□□□□□ -0.41
VPS13D-210ENST00000489961 ACVR2BQ13705 512 aa12.47□□□□□ -0.41
VPS13D-210ENST00000489961 STXBP2Q15833 593 aa12.47□□□□□ -0.41
VPS13D-210ENST00000489961 PRAMEF19Q5SWL8 479 aa12.47□□□□□ -0.41
VPS13D-210ENST00000489961 FAM184AQ8NB25 1140 aa12.47□□□□□ -0.41
VPS13D-210ENST00000489961 AIFM3Q96NN9 605 aa12.47□□□□□ -0.41
VPS13D-210ENST00000489961 VTA1Q9NP79 307 aa12.47□□□□□ -0.41
VPS13D-210ENST00000489961 CCDC85CA6NKD9 419 aa12.46□□□□□ -0.41
VPS13D-210ENST00000489961 MSCO60682 206 aa12.46□□□□□ -0.41
VPS13D-210ENST00000489961 DTNBO60941 627 aa12.46□□□□□ -0.41
VPS13D-210ENST00000489961 NR3C2P08235 984 aa12.46□□□□□ -0.41
VPS13D-210ENST00000489961 ZNF865P0CJ78 1059 aaPredicted RBP12.46□□□□□ -0.41
VPS13D-210ENST00000489961 FDPSP14324 419 aaKnown RBP12.46□□□□□ -0.41
VPS13D-210ENST00000489961 CCND2P30279 289 aa12.46□□□□□ -0.41
VPS13D-210ENST00000489961 AP3B2Q13367 1082 aa12.46□□□□□ -0.41
VPS13D-210ENST00000489961 TRIM29Q14134 588 aa12.46□□□□□ -0.41
VPS13D-210ENST00000489961 PGM5Q15124 567 aa12.46□□□□□ -0.41
VPS13D-210ENST00000489961 GALNT17Q6IS24 598 aa12.46□□□□□ -0.41
VPS13D-210ENST00000489961 EEPD1Q7L9B9 569 aa12.46□□□□□ -0.41
VPS13D-210ENST00000489961 REXO1Q8N1G1 1221 aaKnown RBP12.46□□□□□ -0.41
VPS13D-210ENST00000489961 TRPV1Q8NER1 839 aa12.46□□□□□ -0.41
VPS13D-210ENST00000489961 SNX21Q969T3 373 aa12.46□□□□□ -0.41
VPS13D-210ENST00000489961 PDCD2LQ9BRP1 358 aa12.46□□□□□ -0.41
VPS13D-210ENST00000489961 PAK6Q9NQU5 681 aaPredicted RBP12.46□□□□□ -0.41
VPS13D-210ENST00000489961 PCDHA6Q9UN73 950 aa12.46□□□□□ -0.41
VPS13D-210ENST00000489961 KIF3AQ9Y496 699 aa12.46□□□□□ -0.41
VPS13D-210ENST00000489961 ZSCAN21Q9Y5A6 473 aaPredicted RBP12.46□□□□□ -0.41
VPS13D-210ENST00000489961 PCDHA8Q9Y5H6 950 aa12.46□□□□□ -0.41
VPS13D-210ENST00000489961 FRMPD4Q14CM0 1322 aa12.45□□□□□ -0.42
VPS13D-210ENST00000489961 K7ELQ4 463 aaPredicted RBP12.45□□□□□ -0.42
VPS13D-210ENST00000489961 SEPT4O43236 478 aa12.45□□□□□ -0.42
VPS13D-210ENST00000489961 GJB1P08034 283 aa12.45□□□□□ -0.42
VPS13D-210ENST00000489961 MYCLP12524 364 aaPredicted RBP12.45□□□□□ -0.42
VPS13D-210ENST00000489961 AKR1A1P14550 325 aa12.45□□□□□ -0.42
VPS13D-210ENST00000489961 CLK2P49760 499 aaKnown RBP12.45□□□□□ -0.42
VPS13D-210ENST00000489961 XRRA1Q6P2D8 792 aa12.45□□□□□ -0.42
VPS13D-210ENST00000489961 HSCBQ8IWL3 235 aa12.45□□□□□ -0.42
VPS13D-210ENST00000489961 FBXO16Q8IX29 292 aaPredicted RBP12.45□□□□□ -0.42
VPS13D-210ENST00000489961 PHF20Q9BVI0 1012 aa12.45□□□□□ -0.42
VPS13D-210ENST00000489961 ANO3Q9BYT9 981 aa12.45□□□□□ -0.42
VPS13D-210ENST00000489961 DDX20Q9UHI6 824 aaKnown RBP12.45□□□□□ -0.42
VPS13D-210ENST00000489961 FAM184BQ9ULE4 1060 aa12.45□□□□□ -0.42
VPS13D-210ENST00000489961 PCDHA4Q9UN74 947 aa12.45□□□□□ -0.42
VPS13D-210ENST00000489961 DDX49Q9Y6V7 483 aaKnown RBP12.45□□□□□ -0.42
VPS13D-210ENST00000489961 KIAA1217Q5T5P2 1943 aa12.45□□□□□ -0.42
VPS13D-210ENST00000489961 FRMPD3Q5JV73 1810 aa12.44□□□□□ -0.42
VPS13D-210ENST00000489961 EIF3JO75822 258 aaKnown RBP12.44□□□□□ -0.42
VPS13D-210ENST00000489961 STAM2O75886 525 aa12.44□□□□□ -0.42
VPS13D-210ENST00000489961 CAPN2P17655 700 aa12.44□□□□□ -0.42
VPS13D-210ENST00000489961 CCDC144BQ3MJ40 725 aa12.44□□□□□ -0.42
VPS13D-210ENST00000489961 JAKMIP3Q5VZ66 844 aa12.44□□□□□ -0.42
VPS13D-210ENST00000489961 PCNX4Q63HM2 1172 aa12.44□□□□□ -0.42
VPS13D-210ENST00000489961 VSIG10LQ86VR7 867 aa12.44□□□□□ -0.42
VPS13D-210ENST00000489961 BLIDQ8IZY5 108 aa12.44□□□□□ -0.42
VPS13D-210ENST00000489961 DAGLBQ8NCG7 672 aa12.44□□□□□ -0.42
VPS13D-210ENST00000489961 SHISA4Q96DD7 197 aa12.44□□□□□ -0.42
VPS13D-210ENST00000489961 C8orf76Q96K31 380 aa12.44□□□□□ -0.42
VPS13D-210ENST00000489961 DEFB118Q96PH6 123 aa12.44□□□□□ -0.42
VPS13D-210ENST00000489961 KATNBL1Q9H079 304 aa12.44□□□□□ -0.42
VPS13D-210ENST00000489961 BRMS1Q9HCU9 246 aa12.44□□□□□ -0.42
VPS13D-210ENST00000489961 TMEM260Q9NX78 707 aa12.44□□□□□ -0.42
VPS13D-210ENST00000489961 KCNJ14Q9UNX9 436 aa12.44□□□□□ -0.42
VPS13D-210ENST00000489961 SMC3Q9UQE7 1217 aa12.44□□□□□ -0.42
VPS13D-210ENST00000489961 SGPL1O95470 568 aa12.43□□□□□ -0.42
VPS13D-210ENST00000489961 RARBP10826 455 aa12.43□□□□□ -0.42
VPS13D-210ENST00000489961 GJA8P48165 433 aa12.43□□□□□ -0.42
VPS13D-210ENST00000489961 FOSBP53539 338 aa12.43□□□□□ -0.42
VPS13D-210ENST00000489961 CUL4AQ13619 759 aa12.43□□□□□ -0.42
VPS13D-210ENST00000489961 IQSEC1Q6DN90 963 aa12.43□□□□□ -0.42
VPS13D-210ENST00000489961 TAPT1Q6NXT6 567 aa12.43□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms