RNA–Protein interactions for RNA: ENST00000489403.1

CPSF3-204, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 5

Gene CPSF3, Length 688 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-204ENST00000489403 RABGGTBP53611 331 aa14.53□□□□□ -0.08
CPSF3-204ENST00000489403 CDC37Q16543 378 aaPredicted RBP14.53□□□□□ -0.08
CPSF3-204ENST00000489403 NBPF20Q3BBV1 942 aa14.53□□□□□ -0.08
CPSF3-204ENST00000489403 TJAP1Q5JTD0 557 aa14.53□□□□□ -0.08
CPSF3-204ENST00000489403 PNMA1Q8ND90 353 aa14.53□□□□□ -0.08
CPSF3-204ENST00000489403 SCFD2Q8WU76 684 aa14.53□□□□□ -0.08
CPSF3-204ENST00000489403 SLC28A3Q9HAS3 691 aa14.53□□□□□ -0.08
CPSF3-204ENST00000489403 MUC3AQ02505 3323 aa14.53□□□□□ -0.08
CPSF3-204ENST00000489403 MYH6P13533 1939 aa14.53□□□□□ -0.08
CPSF3-204ENST00000489403 A6NJR5 290 aa14.52□□□□□ -0.09
CPSF3-204ENST00000489403 ZBBXA8MT70 800 aa14.52□□□□□ -0.09
CPSF3-204ENST00000489403 KDM4AO75164 1064 aa14.52□□□□□ -0.09
CPSF3-204ENST00000489403 IGHDP01880 384 aa14.52□□□□□ -0.09
CPSF3-204ENST00000489403 PFKMP08237 780 aa14.52□□□□□ -0.09
CPSF3-204ENST00000489403 TXNP10599 105 aaKnown RBP14.52□□□□□ -0.09
CPSF3-204ENST00000489403 HOXD11P31277 338 aaPredicted RBP14.52□□□□□ -0.09
CPSF3-204ENST00000489403 NT5C2P49902 561 aa14.52□□□□□ -0.09
CPSF3-204ENST00000489403 AAMPQ13685 434 aa14.52□□□□□ -0.09
CPSF3-204ENST00000489403 TTLL4Q14679 1199 aa14.52□□□□□ -0.09
CPSF3-204ENST00000489403 BRDTQ58F21 947 aaPredicted RBP14.52□□□□□ -0.09
CPSF3-204ENST00000489403 FAM47CQ5HY64 1035 aa14.52□□□□□ -0.09
CPSF3-204ENST00000489403 CWC27Q6UX04 472 aaKnown RBP14.52□□□□□ -0.09
CPSF3-204ENST00000489403 DEFB128Q7Z7B8 93 aa14.52□□□□□ -0.09
CPSF3-204ENST00000489403 CHD1LQ86WJ1 897 aa14.52□□□□□ -0.09
CPSF3-204ENST00000489403 IQCA1Q86XH1 822 aa14.52□□□□□ -0.09
CPSF3-204ENST00000489403 RGS22Q8NE09 1264 aa14.52□□□□□ -0.09
CPSF3-204ENST00000489403 TBC1D5Q92609 795 aa14.52□□□□□ -0.09
CPSF3-204ENST00000489403 RWDD1Q9H446 243 aaPredicted RBP14.52□□□□□ -0.09
CPSF3-204ENST00000489403 SLC4A7Q9Y6M7 1214 aa14.52□□□□□ -0.09
CPSF3-204ENST00000489403 KIAA1217Q5T5P2 1943 aa14.52□□□□□ -0.09
CPSF3-204ENST00000489403 ABCB11O95342 1321 aa14.51□□□□□ -0.09
CPSF3-204ENST00000489403 B4DLN1 442 aa14.51□□□□□ -0.09
CPSF3-204ENST00000489403 B4E1Z4 1266 aa14.51□□□□□ -0.09
CPSF3-204ENST00000489403 MYOGP15173 224 aa14.51□□□□□ -0.09
CPSF3-204ENST00000489403 ATP2A2P16615 1042 aaKnown RBP14.51□□□□□ -0.09
CPSF3-204ENST00000489403 IGFBP4P22692 258 aa14.51□□□□□ -0.09
CPSF3-204ENST00000489403 MRPL12P52815 198 aaKnown RBP14.51□□□□□ -0.09
CPSF3-204ENST00000489403 NUCB1Q02818 461 aa14.51□□□□□ -0.09
CPSF3-204ENST00000489403 NFRKBQ6P4R8 1299 aa14.51□□□□□ -0.09
CPSF3-204ENST00000489403 ADGRF4Q8IZF3 695 aa14.51□□□□□ -0.09
CPSF3-204ENST00000489403 ANKS1AQ92625 1134 aa14.51□□□□□ -0.09
CPSF3-204ENST00000489403 KAT14Q9H8E8 782 aa14.51□□□□□ -0.09
CPSF3-204ENST00000489403 DIAPH3Q9NSV4 1193 aa14.51□□□□□ -0.09
CPSF3-204ENST00000489403 COL20A1Q9P218 1284 aa14.51□□□□□ -0.09
CPSF3-204ENST00000489403 PCDHA11Q9Y5I1 949 aa14.51□□□□□ -0.09
CPSF3-204ENST00000489403 MYO9BQ13459 2157 aa14.51□□□□□ -0.09
CPSF3-204ENST00000489403 KPNA6O60684 536 aa14.5□□□□□ -0.09
CPSF3-204ENST00000489403 PTPN11Q06124 597 aaPredicted RBP14.5□□□□□ -0.09
CPSF3-204ENST00000489403 QRICH1Q2TAL8 776 aa14.5□□□□□ -0.09
CPSF3-204ENST00000489403 ASPRV1Q53RT3 343 aa14.5□□□□□ -0.09
CPSF3-204ENST00000489403 CCDC178Q5BJE1 867 aa14.5□□□□□ -0.09
CPSF3-204ENST00000489403 PPP2R2DQ66LE6 453 aa14.5□□□□□ -0.09
CPSF3-204ENST00000489403 CCDC62Q6P9F0 684 aa14.5□□□□□ -0.09
CPSF3-204ENST00000489403 ENAHQ8N8S7 591 aaPredicted RBP14.5□□□□□ -0.09
CPSF3-204ENST00000489403 SYTL5Q8TDW5 730 aaPredicted RBP14.5□□□□□ -0.09
CPSF3-204ENST00000489403 TAAR1Q96RJ0 339 aa14.5□□□□□ -0.09
CPSF3-204ENST00000489403 ZSCAN10Q96SZ4 725 aaPredicted RBP14.5□□□□□ -0.09
CPSF3-204ENST00000489403 DSCC1Q9BVC3 393 aa14.5□□□□□ -0.09
CPSF3-204ENST00000489403 MAF1Q9H063 256 aa14.5□□□□□ -0.09
CPSF3-204ENST00000489403 THEGQ9P2T0 379 aa14.5□□□□□ -0.09
CPSF3-204ENST00000489403 REV3LO60673 3130 aa14.49□□□□□ -0.09
CPSF3-204ENST00000489403 PITPNM1O00562 1244 aa14.49□□□□□ -0.09
CPSF3-204ENST00000489403 MMP3P08254 477 aa14.49□□□□□ -0.09
CPSF3-204ENST00000489403 IQCF3P0C7M6 154 aa14.49□□□□□ -0.09
CPSF3-204ENST00000489403 RFC2P35250 354 aa14.49□□□□□ -0.09
CPSF3-204ENST00000489403 CCDC85BQ15834 202 aaPredicted RBP14.49□□□□□ -0.09
CPSF3-204ENST00000489403 LY6KQ17RY6 165 aa14.49□□□□□ -0.09
CPSF3-204ENST00000489403 ATXN2LQ8WWM7 1075 aaKnown RBP14.49□□□□□ -0.09
CPSF3-204ENST00000489403 ZSWIM5Q9P217 1185 aa14.49□□□□□ -0.09
CPSF3-204ENST00000489403 TRIP12Q14669 1992 aaPredicted RBP14.48□□□□□ -0.09
CPSF3-204ENST00000489403 HIP1O00291 1037 aa14.48□□□□□ -0.09
CPSF3-204ENST00000489403 ARHGAP1Q07960 439 aa14.48□□□□□ -0.09
CPSF3-204ENST00000489403 IMMTQ16891 758 aaKnown RBP14.48□□□□□ -0.09
CPSF3-204ENST00000489403 SEPT14Q6ZU15 432 aa14.48□□□□□ -0.09
CPSF3-204ENST00000489403 NSUN6Q8TEA1 469 aaKnown RBP14.48□□□□□ -0.09
CPSF3-204ENST00000489403 AFG1LQ8WV93 481 aa14.48□□□□□ -0.09
CPSF3-204ENST00000489403 IL25Q9H293 177 aa14.48□□□□□ -0.09
CPSF3-204ENST00000489403 JMJD4Q9H9V9 463 aa14.48□□□□□ -0.09
CPSF3-204ENST00000489403 PTPRSQ13332 1948 aa14.48□□□□□ -0.09
CPSF3-204ENST00000489403 TET1Q8NFU7 2136 aa14.48□□□□□ -0.09
CPSF3-204ENST00000489403 DHX16O60231 1041 aaKnown RBP14.47□□□□□ -0.09
CPSF3-204ENST00000489403 GH1P01241 217 aa14.47□□□□□ -0.09
CPSF3-204ENST00000489403 CA3P07451 260 aa14.47□□□□□ -0.09
CPSF3-204ENST00000489403 PARP1P09874 1014 aaKnown RBP14.47□□□□□ -0.09
CPSF3-204ENST00000489403 ACTN1P12814 892 aa14.47□□□□□ -0.09
CPSF3-204ENST00000489403 EIF2AK2P19525 551 aaKnown RBP14.47□□□□□ -0.09
CPSF3-204ENST00000489403 CHMP4BP1P59074 171 aa14.47□□□□□ -0.09
CPSF3-204ENST00000489403 BFSP2Q13515 415 aa14.47□□□□□ -0.09
CPSF3-204ENST00000489403 TMEM67Q5HYA8 995 aa14.47□□□□□ -0.09
CPSF3-204ENST00000489403 FBXO11Q86XK2 927 aa14.47□□□□□ -0.09
CPSF3-204ENST00000489403 MCF2L2Q86YR7 1114 aa14.47□□□□□ -0.09
CPSF3-204ENST00000489403 RETREG2Q8NC44 543 aa14.47□□□□□ -0.09
CPSF3-204ENST00000489403 EXOC6Q8TAG9 804 aa14.47□□□□□ -0.09
CPSF3-204ENST00000489403 KAT2BQ92831 832 aa14.47□□□□□ -0.09
CPSF3-204ENST00000489403 ASB2Q96Q27 587 aa14.47□□□□□ -0.09
CPSF3-204ENST00000489403 CTAGE1Q96RT6 745 aa14.47□□□□□ -0.09
CPSF3-204ENST00000489403 IWS1Q96ST2 819 aa14.47□□□□□ -0.09
CPSF3-204ENST00000489403 SLC9A7Q96T83 725 aa14.47□□□□□ -0.09
CPSF3-204ENST00000489403 RMDN3Q96TC7 470 aa14.47□□□□□ -0.09
CPSF3-204ENST00000489403 VAT1LQ9HCJ6 419 aa14.47□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms